| Literature DB >> 22798798 |
Hoong-Kun Fun, Ching Kheng Quah, P C Shyma, Balakrishna Kalluraya, J H S Vidyashree.
Abstract
The title compound, C(14)H(11)ClFN(3)O·H(2)O, exists in an E conformation with respect to the N=C bond. The pyridine ring forms a dihedral angle of 5.00 (9)° with the benzene ring. In the crystal, the ketone O atom accepts one O-H⋯O and one C-H⋯O hydrogen bond, the water O atom accepts one N-H⋯O and two C-H⋯O hydrogen bonds and the pyridine N atom accepts one O-H⋯N hydrogen bond, forming layers parallel to the ab plane.Entities:
Year: 2012 PMID: 22798798 PMCID: PMC3393933 DOI: 10.1107/S1600536812026736
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H11ClFN3O·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5275 reflections |
| θ = 3.2–30.0° | |
| µ = 0.29 mm−1 | |
| β = 106.614 (5)° | Block, colourless |
| 0.47 × 0.24 × 0.13 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 3154 independent reflections |
| Radiation source: fine-focus sealed tube | 2625 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 12000 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3154 reflections | (Δ/σ)max = 0.001 |
| 191 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.63 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.13433 (5) | 0.04401 (12) | −0.22498 (2) | 0.0433 (2) | |
| F1 | 0.41013 (12) | 0.18849 (16) | −0.14979 (5) | 0.0253 (3) | |
| O1 | 0.90720 (13) | −0.28353 (18) | 0.07189 (6) | 0.0216 (3) | |
| N1 | 0.69521 (15) | −0.1028 (2) | −0.01138 (6) | 0.0147 (3) | |
| N2 | 0.81273 (15) | 0.0080 (2) | 0.02094 (6) | 0.0140 (3) | |
| H3 | 0.8209 | 0.1329 | 0.0139 | 0.017* | |
| N3 | 1.18040 (16) | 0.3394 (2) | 0.11873 (7) | 0.0175 (3) | |
| C1 | 1.1389 (2) | −0.0710 (3) | 0.14649 (8) | 0.0213 (4) | |
| H1A | 1.1260 | −0.2118 | 0.1559 | 0.026* | |
| C2 | 1.2558 (2) | 0.0394 (3) | 0.17998 (8) | 0.0224 (4) | |
| H2A | 1.3235 | −0.0246 | 0.2130 | 0.027* | |
| C3 | 1.27378 (18) | 0.2453 (3) | 0.16504 (8) | 0.0158 (3) | |
| C4 | 1.06603 (18) | 0.2327 (3) | 0.08720 (8) | 0.0164 (3) | |
| H4A | 0.9987 | 0.3015 | 0.0551 | 0.020* | |
| C5 | 1.04020 (18) | 0.0268 (2) | 0.09874 (7) | 0.0134 (3) | |
| C6 | 0.91479 (18) | −0.0965 (2) | 0.06299 (7) | 0.0144 (3) | |
| C7 | 0.60432 (18) | −0.0013 (2) | −0.05240 (7) | 0.0145 (3) | |
| H7A | 0.6211 | 0.1397 | −0.0602 | 0.017* | |
| C8 | 0.47374 (17) | −0.1065 (3) | −0.08721 (7) | 0.0146 (3) | |
| C9 | 0.37845 (19) | −0.0051 (3) | −0.13481 (8) | 0.0182 (4) | |
| C10 | 0.25093 (19) | −0.0955 (3) | −0.16783 (8) | 0.0243 (4) | |
| C11 | 0.2185 (2) | −0.2941 (3) | −0.15368 (9) | 0.0276 (4) | |
| H11A | 0.1321 | −0.3580 | −0.1760 | 0.033* | |
| C12 | 0.3126 (2) | −0.3998 (3) | −0.10675 (9) | 0.0254 (4) | |
| H12A | 0.2903 | −0.5365 | −0.0970 | 0.030* | |
| C13 | 0.43891 (19) | −0.3077 (3) | −0.07395 (8) | 0.0191 (4) | |
| H13A | 0.5027 | −0.3824 | −0.0420 | 0.023* | |
| C14 | 1.4001 (2) | 0.3715 (3) | 0.19936 (8) | 0.0216 (4) | |
| H14A | 1.3685 | 0.5111 | 0.2064 | 0.032* | |
| H14B | 1.4689 | 0.3811 | 0.1759 | 0.032* | |
| H14C | 1.4453 | 0.3046 | 0.2382 | 0.032* | |
| O1W | 0.78116 (14) | 0.41994 (18) | −0.02068 (6) | 0.0207 (3) | |
| H2W1 | 0.8016 | 0.5100 | 0.0026 | 0.031* | |
| H1W1 | 0.7882 | 0.4580 | −0.0518 | 0.031* |
| Cl1 | 0.0185 (3) | 0.0809 (5) | 0.0264 (3) | 0.0020 (3) | −0.00018 (19) | 0.0134 (3) |
| F1 | 0.0256 (6) | 0.0188 (5) | 0.0300 (6) | 0.0021 (4) | 0.0052 (4) | 0.0078 (4) |
| O1 | 0.0211 (7) | 0.0072 (6) | 0.0320 (7) | −0.0027 (5) | 0.0004 (5) | 0.0036 (5) |
| N1 | 0.0146 (7) | 0.0096 (6) | 0.0195 (7) | −0.0031 (5) | 0.0040 (5) | −0.0031 (5) |
| N2 | 0.0149 (7) | 0.0062 (6) | 0.0194 (7) | −0.0033 (5) | 0.0025 (5) | −0.0010 (5) |
| N3 | 0.0166 (7) | 0.0121 (7) | 0.0221 (7) | −0.0031 (5) | 0.0027 (6) | −0.0012 (5) |
| C1 | 0.0214 (9) | 0.0125 (8) | 0.0270 (9) | −0.0021 (7) | 0.0024 (7) | 0.0045 (7) |
| C2 | 0.0175 (9) | 0.0190 (9) | 0.0257 (9) | −0.0014 (7) | −0.0018 (7) | 0.0053 (7) |
| C3 | 0.0149 (8) | 0.0142 (8) | 0.0186 (8) | −0.0015 (6) | 0.0053 (6) | −0.0020 (6) |
| C4 | 0.0162 (8) | 0.0109 (7) | 0.0198 (8) | −0.0018 (6) | 0.0018 (6) | 0.0015 (6) |
| C5 | 0.0135 (8) | 0.0094 (7) | 0.0181 (8) | −0.0016 (6) | 0.0057 (6) | −0.0014 (6) |
| C6 | 0.0149 (8) | 0.0091 (7) | 0.0197 (8) | −0.0022 (6) | 0.0058 (6) | −0.0006 (6) |
| C7 | 0.0164 (8) | 0.0088 (7) | 0.0182 (8) | −0.0014 (6) | 0.0050 (6) | −0.0011 (6) |
| C8 | 0.0142 (8) | 0.0122 (7) | 0.0185 (7) | −0.0025 (6) | 0.0065 (6) | −0.0040 (6) |
| C9 | 0.0177 (8) | 0.0181 (8) | 0.0199 (8) | −0.0011 (7) | 0.0070 (6) | −0.0010 (6) |
| C10 | 0.0139 (8) | 0.0409 (11) | 0.0181 (8) | −0.0028 (8) | 0.0045 (6) | −0.0038 (8) |
| C11 | 0.0173 (9) | 0.0395 (12) | 0.0276 (10) | −0.0127 (8) | 0.0090 (7) | −0.0136 (8) |
| C12 | 0.0251 (10) | 0.0204 (9) | 0.0348 (10) | −0.0109 (8) | 0.0153 (8) | −0.0099 (8) |
| C13 | 0.0204 (9) | 0.0130 (8) | 0.0251 (9) | −0.0035 (7) | 0.0088 (7) | −0.0024 (6) |
| C14 | 0.0182 (9) | 0.0209 (9) | 0.0235 (8) | −0.0044 (7) | 0.0023 (7) | −0.0033 (7) |
| O1W | 0.0282 (7) | 0.0081 (5) | 0.0244 (6) | −0.0042 (5) | 0.0052 (5) | 0.0019 (5) |
| Cl1—C10 | 1.731 (2) | C5—C6 | 1.497 (2) |
| F1—C9 | 1.354 (2) | C7—C8 | 1.467 (2) |
| O1—C6 | 1.228 (2) | C7—H7A | 0.9500 |
| N1—C7 | 1.279 (2) | C8—C9 | 1.386 (2) |
| N1—N2 | 1.3786 (18) | C8—C13 | 1.397 (2) |
| N2—C6 | 1.357 (2) | C9—C10 | 1.391 (2) |
| N2—H3 | 0.8295 | C10—C11 | 1.380 (3) |
| N3—C3 | 1.338 (2) | C11—C12 | 1.385 (3) |
| N3—C4 | 1.338 (2) | C11—H11A | 0.9500 |
| C1—C2 | 1.381 (2) | C12—C13 | 1.386 (2) |
| C1—C5 | 1.393 (2) | C12—H12A | 0.9500 |
| C1—H1A | 0.9500 | C13—H13A | 0.9500 |
| C2—C3 | 1.395 (2) | C14—H14A | 0.9800 |
| C2—H2A | 0.9500 | C14—H14B | 0.9800 |
| C3—C14 | 1.503 (2) | C14—H14C | 0.9800 |
| C4—C5 | 1.391 (2) | O1W—H2W1 | 0.7778 |
| C4—H4A | 0.9500 | O1W—H1W1 | 0.7815 |
| C7—N1—N2 | 115.64 (14) | C9—C8—C13 | 117.44 (15) |
| C6—N2—N1 | 117.43 (13) | C9—C8—C7 | 120.04 (15) |
| C6—N2—H3 | 122.0 | C13—C8—C7 | 122.51 (15) |
| N1—N2—H3 | 120.6 | F1—C9—C8 | 119.08 (15) |
| C3—N3—C4 | 118.47 (15) | F1—C9—C10 | 118.73 (16) |
| C2—C1—C5 | 119.13 (16) | C8—C9—C10 | 122.19 (17) |
| C2—C1—H1A | 120.4 | C11—C10—C9 | 119.29 (18) |
| C5—C1—H1A | 120.4 | C11—C10—Cl1 | 121.11 (15) |
| C1—C2—C3 | 119.62 (16) | C9—C10—Cl1 | 119.59 (16) |
| C1—C2—H2A | 120.2 | C10—C11—C12 | 119.69 (17) |
| C3—C2—H2A | 120.2 | C10—C11—H11A | 120.2 |
| N3—C3—C2 | 121.56 (15) | C12—C11—H11A | 120.2 |
| N3—C3—C14 | 116.62 (15) | C11—C12—C13 | 120.50 (18) |
| C2—C3—C14 | 121.81 (16) | C11—C12—H12A | 119.8 |
| N3—C4—C5 | 123.74 (15) | C13—C12—H12A | 119.8 |
| N3—C4—H4A | 118.1 | C12—C13—C8 | 120.87 (17) |
| C5—C4—H4A | 118.1 | C12—C13—H13A | 119.6 |
| C4—C5—C1 | 117.45 (15) | C8—C13—H13A | 119.6 |
| C4—C5—C6 | 124.46 (15) | C3—C14—H14A | 109.5 |
| C1—C5—C6 | 118.08 (15) | C3—C14—H14B | 109.5 |
| O1—C6—N2 | 122.65 (15) | H14A—C14—H14B | 109.5 |
| O1—C6—C5 | 120.50 (15) | C3—C14—H14C | 109.5 |
| N2—C6—C5 | 116.85 (14) | H14A—C14—H14C | 109.5 |
| N1—C7—C8 | 118.86 (15) | H14B—C14—H14C | 109.5 |
| N1—C7—H7A | 120.6 | H2W1—O1W—H1W1 | 109.3 |
| C8—C7—H7A | 120.6 | ||
| C7—N1—N2—C6 | −177.06 (15) | N2—N1—C7—C8 | −177.73 (13) |
| C5—C1—C2—C3 | −0.7 (3) | N1—C7—C8—C9 | −175.30 (16) |
| C4—N3—C3—C2 | 1.4 (3) | N1—C7—C8—C13 | 5.6 (3) |
| C4—N3—C3—C14 | −179.66 (15) | C13—C8—C9—F1 | −178.62 (15) |
| C1—C2—C3—N3 | −0.1 (3) | C7—C8—C9—F1 | 2.2 (2) |
| C1—C2—C3—C14 | −179.06 (18) | C13—C8—C9—C10 | 1.4 (3) |
| C3—N3—C4—C5 | −1.8 (3) | C7—C8—C9—C10 | −177.74 (16) |
| N3—C4—C5—C1 | 0.9 (3) | F1—C9—C10—C11 | 178.90 (16) |
| N3—C4—C5—C6 | −178.41 (16) | C8—C9—C10—C11 | −1.1 (3) |
| C2—C1—C5—C4 | 0.4 (3) | F1—C9—C10—Cl1 | −2.2 (2) |
| C2—C1—C5—C6 | 179.74 (16) | C8—C9—C10—Cl1 | 177.77 (14) |
| N1—N2—C6—O1 | 1.7 (3) | C9—C10—C11—C12 | 0.4 (3) |
| N1—N2—C6—C5 | −178.62 (13) | Cl1—C10—C11—C12 | −178.47 (15) |
| C4—C5—C6—O1 | 172.25 (17) | C10—C11—C12—C13 | 0.0 (3) |
| C1—C5—C6—O1 | −7.1 (3) | C11—C12—C13—C8 | 0.4 (3) |
| C4—C5—C6—N2 | −7.4 (2) | C9—C8—C13—C12 | −1.0 (3) |
| C1—C5—C6—N2 | 173.25 (15) | C7—C8—C13—C12 | 178.11 (16) |
| H··· | ||||
| O1 | 0.78 | 2.11 | 2.8713 (18) | 166 |
| O1 | 0.78 | 2.11 | 2.859 (2) | 160 |
| N2—H3···O1 | 0.83 | 2.01 | 2.8104 (18) | 162 |
| C4—H4 | 0.95 | 2.46 | 3.388 (2) | 165 |
| C7—H7 | 0.95 | 2.39 | 3.1902 (19) | 141 |
| C12—H12 | 0.95 | 2.46 | 3.230 (2) | 138 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.78 | 2.11 | 2.8713 (18) | 166 |
| O1 | 0.78 | 2.11 | 2.859 (2) | 160 |
| N2—H3⋯O1 | 0.83 | 2.01 | 2.8104 (18) | 162 |
| C4—H4 | 0.95 | 2.46 | 3.388 (2) | 165 |
| C7—H7 | 0.95 | 2.39 | 3.1902 (19) | 141 |
| C12—H12 | 0.95 | 2.46 | 3.230 (2) | 138 |
Symmetry codes: (i) ; (ii) ; (iii) .