Literature DB >> 22798798

N'-[(E)-3-Chloro-2-fluoro-benzyl-idene]-6-methyl-nicotinohydrazide monohydrate.

Hoong-Kun Fun, Ching Kheng Quah, P C Shyma, Balakrishna Kalluraya, J H S Vidyashree.   

Abstract

The title compound, C(14)H(11)ClFN(3)O·H(2)O, exists in an E conformation with respect to the N=C bond. The pyridine ring forms a dihedral angle of 5.00 (9)° with the benzene ring. In the crystal, the ketone O atom accepts one O-H⋯O and one C-H⋯O hydrogen bond, the water O atom accepts one N-H⋯O and two C-H⋯O hydrogen bonds and the pyridine N atom accepts one O-H⋯N hydrogen bond, forming layers parallel to the ab plane.

Entities:  

Year:  2012        PMID: 22798798      PMCID: PMC3393933          DOI: 10.1107/S1600536812026736

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the biological properties of hydrazone derivatives, see: Rollas & Kucukguzel (2007 ▶); Sondhi et al. (2009 ▶); Belskaya et al. (2010 ▶); Vijesh et al. (2011 ▶); Galil & Amr (2000 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For related structures, see: Fun, Quah & Abdel-Aziz (2012 ▶); Fun, Quah, Shetty et al. (2012 ▶); Fun, Quah, Nitinchandra et al. (2012 ▶).

Experimental

Crystal data

C14H11ClFN3O·H2O M = 309.72 Monoclinic, a = 9.7898 (12) Å b = 6.4440 (8) Å c = 23.121 (3) Å β = 106.614 (5)° V = 1397.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 100 K 0.47 × 0.24 × 0.13 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.874, T max = 0.962 12000 measured reflections 3154 independent reflections 2625 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.137 S = 1.05 3154 reflections 191 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.63 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812026736/is5156sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026736/is5156Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812026736/is5156Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H11ClFN3O·H2OF(000) = 640
Mr = 309.72Dx = 1.472 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5275 reflections
a = 9.7898 (12) Åθ = 3.2–30.0°
b = 6.4440 (8) ŵ = 0.29 mm1
c = 23.121 (3) ÅT = 100 K
β = 106.614 (5)°Block, colourless
V = 1397.7 (3) Å30.47 × 0.24 × 0.13 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer3154 independent reflections
Radiation source: fine-focus sealed tube2625 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.874, Tmax = 0.962k = −8→8
12000 measured reflectionsl = −30→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0777P)2 + 0.8539P] where P = (Fo2 + 2Fc2)/3
3154 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.63 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.13433 (5)0.04401 (12)−0.22498 (2)0.0433 (2)
F10.41013 (12)0.18849 (16)−0.14979 (5)0.0253 (3)
O10.90720 (13)−0.28353 (18)0.07189 (6)0.0216 (3)
N10.69521 (15)−0.1028 (2)−0.01138 (6)0.0147 (3)
N20.81273 (15)0.0080 (2)0.02094 (6)0.0140 (3)
H30.82090.13290.01390.017*
N31.18040 (16)0.3394 (2)0.11873 (7)0.0175 (3)
C11.1389 (2)−0.0710 (3)0.14649 (8)0.0213 (4)
H1A1.1260−0.21180.15590.026*
C21.2558 (2)0.0394 (3)0.17998 (8)0.0224 (4)
H2A1.3235−0.02460.21300.027*
C31.27378 (18)0.2453 (3)0.16504 (8)0.0158 (3)
C41.06603 (18)0.2327 (3)0.08720 (8)0.0164 (3)
H4A0.99870.30150.05510.020*
C51.04020 (18)0.0268 (2)0.09874 (7)0.0134 (3)
C60.91479 (18)−0.0965 (2)0.06299 (7)0.0144 (3)
C70.60432 (18)−0.0013 (2)−0.05240 (7)0.0145 (3)
H7A0.62110.1397−0.06020.017*
C80.47374 (17)−0.1065 (3)−0.08721 (7)0.0146 (3)
C90.37845 (19)−0.0051 (3)−0.13481 (8)0.0182 (4)
C100.25093 (19)−0.0955 (3)−0.16783 (8)0.0243 (4)
C110.2185 (2)−0.2941 (3)−0.15368 (9)0.0276 (4)
H11A0.1321−0.3580−0.17600.033*
C120.3126 (2)−0.3998 (3)−0.10675 (9)0.0254 (4)
H12A0.2903−0.5365−0.09700.030*
C130.43891 (19)−0.3077 (3)−0.07395 (8)0.0191 (4)
H13A0.5027−0.3824−0.04200.023*
C141.4001 (2)0.3715 (3)0.19936 (8)0.0216 (4)
H14A1.36850.51110.20640.032*
H14B1.46890.38110.17590.032*
H14C1.44530.30460.23820.032*
O1W0.78116 (14)0.41994 (18)−0.02068 (6)0.0207 (3)
H2W10.80160.51000.00260.031*
H1W10.78820.4580−0.05180.031*
U11U22U33U12U13U23
Cl10.0185 (3)0.0809 (5)0.0264 (3)0.0020 (3)−0.00018 (19)0.0134 (3)
F10.0256 (6)0.0188 (5)0.0300 (6)0.0021 (4)0.0052 (4)0.0078 (4)
O10.0211 (7)0.0072 (6)0.0320 (7)−0.0027 (5)0.0004 (5)0.0036 (5)
N10.0146 (7)0.0096 (6)0.0195 (7)−0.0031 (5)0.0040 (5)−0.0031 (5)
N20.0149 (7)0.0062 (6)0.0194 (7)−0.0033 (5)0.0025 (5)−0.0010 (5)
N30.0166 (7)0.0121 (7)0.0221 (7)−0.0031 (5)0.0027 (6)−0.0012 (5)
C10.0214 (9)0.0125 (8)0.0270 (9)−0.0021 (7)0.0024 (7)0.0045 (7)
C20.0175 (9)0.0190 (9)0.0257 (9)−0.0014 (7)−0.0018 (7)0.0053 (7)
C30.0149 (8)0.0142 (8)0.0186 (8)−0.0015 (6)0.0053 (6)−0.0020 (6)
C40.0162 (8)0.0109 (7)0.0198 (8)−0.0018 (6)0.0018 (6)0.0015 (6)
C50.0135 (8)0.0094 (7)0.0181 (8)−0.0016 (6)0.0057 (6)−0.0014 (6)
C60.0149 (8)0.0091 (7)0.0197 (8)−0.0022 (6)0.0058 (6)−0.0006 (6)
C70.0164 (8)0.0088 (7)0.0182 (8)−0.0014 (6)0.0050 (6)−0.0011 (6)
C80.0142 (8)0.0122 (7)0.0185 (7)−0.0025 (6)0.0065 (6)−0.0040 (6)
C90.0177 (8)0.0181 (8)0.0199 (8)−0.0011 (7)0.0070 (6)−0.0010 (6)
C100.0139 (8)0.0409 (11)0.0181 (8)−0.0028 (8)0.0045 (6)−0.0038 (8)
C110.0173 (9)0.0395 (12)0.0276 (10)−0.0127 (8)0.0090 (7)−0.0136 (8)
C120.0251 (10)0.0204 (9)0.0348 (10)−0.0109 (8)0.0153 (8)−0.0099 (8)
C130.0204 (9)0.0130 (8)0.0251 (9)−0.0035 (7)0.0088 (7)−0.0024 (6)
C140.0182 (9)0.0209 (9)0.0235 (8)−0.0044 (7)0.0023 (7)−0.0033 (7)
O1W0.0282 (7)0.0081 (5)0.0244 (6)−0.0042 (5)0.0052 (5)0.0019 (5)
Cl1—C101.731 (2)C5—C61.497 (2)
F1—C91.354 (2)C7—C81.467 (2)
O1—C61.228 (2)C7—H7A0.9500
N1—C71.279 (2)C8—C91.386 (2)
N1—N21.3786 (18)C8—C131.397 (2)
N2—C61.357 (2)C9—C101.391 (2)
N2—H30.8295C10—C111.380 (3)
N3—C31.338 (2)C11—C121.385 (3)
N3—C41.338 (2)C11—H11A0.9500
C1—C21.381 (2)C12—C131.386 (2)
C1—C51.393 (2)C12—H12A0.9500
C1—H1A0.9500C13—H13A0.9500
C2—C31.395 (2)C14—H14A0.9800
C2—H2A0.9500C14—H14B0.9800
C3—C141.503 (2)C14—H14C0.9800
C4—C51.391 (2)O1W—H2W10.7778
C4—H4A0.9500O1W—H1W10.7815
C7—N1—N2115.64 (14)C9—C8—C13117.44 (15)
C6—N2—N1117.43 (13)C9—C8—C7120.04 (15)
C6—N2—H3122.0C13—C8—C7122.51 (15)
N1—N2—H3120.6F1—C9—C8119.08 (15)
C3—N3—C4118.47 (15)F1—C9—C10118.73 (16)
C2—C1—C5119.13 (16)C8—C9—C10122.19 (17)
C2—C1—H1A120.4C11—C10—C9119.29 (18)
C5—C1—H1A120.4C11—C10—Cl1121.11 (15)
C1—C2—C3119.62 (16)C9—C10—Cl1119.59 (16)
C1—C2—H2A120.2C10—C11—C12119.69 (17)
C3—C2—H2A120.2C10—C11—H11A120.2
N3—C3—C2121.56 (15)C12—C11—H11A120.2
N3—C3—C14116.62 (15)C11—C12—C13120.50 (18)
C2—C3—C14121.81 (16)C11—C12—H12A119.8
N3—C4—C5123.74 (15)C13—C12—H12A119.8
N3—C4—H4A118.1C12—C13—C8120.87 (17)
C5—C4—H4A118.1C12—C13—H13A119.6
C4—C5—C1117.45 (15)C8—C13—H13A119.6
C4—C5—C6124.46 (15)C3—C14—H14A109.5
C1—C5—C6118.08 (15)C3—C14—H14B109.5
O1—C6—N2122.65 (15)H14A—C14—H14B109.5
O1—C6—C5120.50 (15)C3—C14—H14C109.5
N2—C6—C5116.85 (14)H14A—C14—H14C109.5
N1—C7—C8118.86 (15)H14B—C14—H14C109.5
N1—C7—H7A120.6H2W1—O1W—H1W1109.3
C8—C7—H7A120.6
C7—N1—N2—C6−177.06 (15)N2—N1—C7—C8−177.73 (13)
C5—C1—C2—C3−0.7 (3)N1—C7—C8—C9−175.30 (16)
C4—N3—C3—C21.4 (3)N1—C7—C8—C135.6 (3)
C4—N3—C3—C14−179.66 (15)C13—C8—C9—F1−178.62 (15)
C1—C2—C3—N3−0.1 (3)C7—C8—C9—F12.2 (2)
C1—C2—C3—C14−179.06 (18)C13—C8—C9—C101.4 (3)
C3—N3—C4—C5−1.8 (3)C7—C8—C9—C10−177.74 (16)
N3—C4—C5—C10.9 (3)F1—C9—C10—C11178.90 (16)
N3—C4—C5—C6−178.41 (16)C8—C9—C10—C11−1.1 (3)
C2—C1—C5—C40.4 (3)F1—C9—C10—Cl1−2.2 (2)
C2—C1—C5—C6179.74 (16)C8—C9—C10—Cl1177.77 (14)
N1—N2—C6—O11.7 (3)C9—C10—C11—C120.4 (3)
N1—N2—C6—C5−178.62 (13)Cl1—C10—C11—C12−178.47 (15)
C4—C5—C6—O1172.25 (17)C10—C11—C12—C130.0 (3)
C1—C5—C6—O1−7.1 (3)C11—C12—C13—C80.4 (3)
C4—C5—C6—N2−7.4 (2)C9—C8—C13—C12−1.0 (3)
C1—C5—C6—N2173.25 (15)C7—C8—C13—C12178.11 (16)
D—H···AD—HH···AD···AD—H···A
O1W—H2W1···O1i0.782.112.8713 (18)166
O1W—H1W1···N3ii0.782.112.859 (2)160
N2—H3···O1W0.832.012.8104 (18)162
C4—H4A···O1W0.952.463.388 (2)165
C7—H7A···O1W0.952.393.1902 (19)141
C12—H12A···O1iii0.952.463.230 (2)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H2W1⋯O1i 0.782.112.8713 (18)166
O1W—H1W1⋯N3ii 0.782.112.859 (2)160
N2—H3⋯O1W 0.832.012.8104 (18)162
C4—H4A⋯O1W 0.952.463.388 (2)165
C7—H7A⋯O1W 0.952.393.1902 (19)141
C12—H12A⋯O1iii 0.952.463.230 (2)138

Symmetry codes: (i) ; (ii) ; (iii) .

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