Literature DB >> 22797751

Chromosomal replication initiation machinery of low-G+C-content Firmicutes.

Geoffrey S Briggs1, Wiep Klaas Smits, Panos Soultanas.   

Abstract

Much of our knowledge of the initiation of DNA replication comes from studies in the gram-negative model organism Escherichia coli. However, the location and structure of the origin of replication within the E. coli genome and the identification and study of the proteins which constitute the E. coli initiation complex suggest that it might not be as universal as once thought. The archetypal low-G+C-content gram-positive Firmicutes initiate DNA replication via a unique primosomal machinery, quite distinct from that seen in E. coli, and an examination of oriC in the Firmicutes species Bacillus subtilis indicates that it might provide a better model for the ancestral bacterial origin of replication. Therefore, the study of replication initiation in organisms other than E. coli, such as B. subtilis, will greatly advance our knowledge and understanding of these processes as a whole. In this minireview, we highlight the structure-function relationships of the Firmicutes primosomal proteins, discuss the significance of their oriC architecture, and present a model for replication initiation at oriC.

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Year:  2012        PMID: 22797751      PMCID: PMC3457243          DOI: 10.1128/JB.00865-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  80 in total

1.  Loading a ring: structure of the Bacillus subtilis DnaB protein, a co-loader of the replicative helicase.

Authors:  Rafael Núñez-Ramírez; Marion Velten; Germán Rivas; Patrice Polard; José María Carazo; Luis Enrique Donate
Journal:  J Mol Biol       Date:  2007-01-09       Impact factor: 5.469

2.  Conserved gene arrangement in the origin region of the Streptomyces coelicolor chromosome.

Authors:  M J Calcutt; F J Schmidt
Journal:  J Bacteriol       Date:  1992-05       Impact factor: 3.490

Review 3.  Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

Authors:  Tsutomu Katayama; Shogo Ozaki; Kenji Keyamura; Kazuyuki Fujimitsu
Journal:  Nat Rev Microbiol       Date:  2010-03       Impact factor: 60.633

4.  High-affinity binding of hemimethylated oriC by Escherichia coli membranes is mediated by a multiprotein system that includes SeqA and a newly identified factor, SeqB.

Authors:  N Shakibai; K Ishidate; E Reshetnyak; S Gunji; M Kohiyama; L Rothfield
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-15       Impact factor: 11.205

5.  Complexes at the replication origin of Bacillus subtilis with homologous and heterologous DnaA protein.

Authors:  M Krause; B Rückert; R Lurz; W Messer
Journal:  J Mol Biol       Date:  1997-12-05       Impact factor: 5.469

6.  Replication initiation at a distance: determination of the cis- and trans-acting elements of replication origin alpha of plasmid R6K.

Authors:  Mukesh Saxena; Mayuresh Abhyankar; Deepak Bastia
Journal:  J Biol Chem       Date:  2009-12-15       Impact factor: 5.157

7.  Single-molecule atomic force spectroscopy reveals that DnaD forms scaffolds and enhances duplex melting.

Authors:  Wenke Zhang; Cristina Machón; Alberto Orta; Nicola Phillips; Clive J Roberts; Stephanie Allen; Panos Soultanas
Journal:  J Mol Biol       Date:  2008-02-02       Impact factor: 5.469

8.  Conservation of genes and their organization in the chromosomal replication origin region of Bacillus subtilis and Escherichia coli.

Authors:  N Ogasawara; S Moriya; K von Meyenburg; F G Hansen; H Yoshikawa
Journal:  EMBO J       Date:  1985-12-01       Impact factor: 11.598

9.  Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis.

Authors:  Hajime Okumura; Mika Yoshimura; Mikako Ueki; Taku Oshima; Naotake Ogasawara; Shu Ishikawa
Journal:  Nucleic Acids Res       Date:  2011-09-12       Impact factor: 16.971

10.  Association of the chromosome replication initiator DnaA with the Escherichia coli inner membrane in vivo: quantity and mode of binding.

Authors:  Tomer Regev; Nadav Myers; Raz Zarivach; Itzhak Fishov
Journal:  PLoS One       Date:  2012-05-04       Impact factor: 3.240

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  25 in total

1.  DNA replication initiation in Bacillus subtilis: structural and functional characterization of the essential DnaA-DnaD interaction.

Authors:  Eleyna Martin; Huw E L Williams; Matthaios Pitoulias; Daniel Stevens; Charles Winterhalter; Timothy D Craggs; Heath Murray; Mark S Searle; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

Review 2.  Fifty years after the replicon hypothesis: cell-specific master regulators as new players in chromosome replication control.

Authors:  Marcin Wolański; Dagmara Jakimowicz; Jolanta Zakrzewska-Czerwińska
Journal:  J Bacteriol       Date:  2014-06-09       Impact factor: 3.490

Review 3.  Control of bacterial chromosome replication by non-coding regions outside the origin.

Authors:  Jakob Frimodt-Møller; Godefroid Charbon; Anders Løbner-Olesen
Journal:  Curr Genet       Date:  2016-12-09       Impact factor: 3.886

Review 4.  Maintenance of chromosome structure in Pseudomonas aeruginosa.

Authors:  Valentin V Rybenkov
Journal:  FEMS Microbiol Lett       Date:  2014-06-12       Impact factor: 2.742

Review 5.  The Blueprint of a Minimal Cell: MiniBacillus.

Authors:  Daniel R Reuß; Fabian M Commichau; Jan Gundlach; Bingyao Zhu; Jörg Stülke
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-28       Impact factor: 11.056

6.  Regulation of DNA Binding and High-Order Oligomerization of the DnaB Helicase Loader.

Authors:  Lindsay A Matthews; Lyle A Simmons
Journal:  J Bacteriol       Date:  2020-10-08       Impact factor: 3.490

7.  Genome-based identification of active prophage regions by next generation sequencing in Bacillus licheniformis DSM13.

Authors:  Robert Hertel; David Pintor Rodríguez; Jacqueline Hollensteiner; Sascha Dietrich; Andreas Leimbach; Michael Hoppert; Heiko Liesegang; Sonja Volland
Journal:  PLoS One       Date:  2015-03-26       Impact factor: 3.240

8.  Functional interplay of DnaE polymerase, DnaG primase and DnaC helicase within a ternary complex, and primase to polymerase hand-off during lagging strand DNA replication in Bacillus subtilis.

Authors:  Olivier Rannou; Emmanuelle Le Chatelier; Marilynn A Larson; Hamid Nouri; Bérengère Dalmais; Charles Laughton; Laurent Jannière; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2013-04-05       Impact factor: 16.971

9.  Structure of a helicase-helicase loader complex reveals insights into the mechanism of bacterial primosome assembly.

Authors:  Bin Liu; William K Eliason; Thomas A Steitz
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes.

Authors:  Kestutis Timinskas; Monika Balvočiūtė; Albertas Timinskas; Česlovas Venclovas
Journal:  Nucleic Acids Res       Date:  2013-10-07       Impact factor: 16.971

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