Literature DB >> 17289076

Loading a ring: structure of the Bacillus subtilis DnaB protein, a co-loader of the replicative helicase.

Rafael Núñez-Ramírez1, Marion Velten, Germán Rivas, Patrice Polard, José María Carazo, Luis Enrique Donate.   

Abstract

Loading of the ring-shaped replicative helicase is a critical step in the initiation of DNA replication. Bacillus subtilis has adopted a two-protein strategy to load its hexameric replicative helicase: DnaB and DnaI interact with the helicase and mediate its delivery onto DNA. We present here the 3D electron microscopy structure of the DnaB protein, along with a detailed analysis of both its oligomeric state and its domain organization. DnaB is organized as an asymmetric tetramer that is comprised of two stacked components, one arranged as a closed collar and the other as an open sigma shape. Intriguingly, the 3D map of DnaB exhibits an overall architecture similar to the structure of the Escherichia coli gamma-complex, the loader of the ring-shaped processivity factor. We propose a model whereby each DnaB monomer participates in both stacked components of the tetramer and displays a different overall shape. This asymmetric quaternary organization could be a general feature of ring loaders.

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Year:  2007        PMID: 17289076     DOI: 10.1016/j.jmb.2006.12.075

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  11 in total

1.  Image processing for electron microscopy single-particle analysis using XMIPP.

Authors:  Sjors H W Scheres; Rafael Núñez-Ramírez; Carlos O S Sorzano; José María Carazo; Roberto Marabini
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

2.  DNA replication initiation in Bacillus subtilis: structural and functional characterization of the essential DnaA-DnaD interaction.

Authors:  Eleyna Martin; Huw E L Williams; Matthaios Pitoulias; Daniel Stevens; Charles Winterhalter; Timothy D Craggs; Heath Murray; Mark S Searle; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

3.  Structural analyses of the bacterial primosomal protein DnaB reveal that it is a tetramer and forms a complex with a primosomal re-initiation protein.

Authors:  Yi-Ching Li; Vankadari Naveen; Min-Guan Lin; Chwan-Deng Hsiao
Journal:  J Biol Chem       Date:  2017-08-14       Impact factor: 5.157

4.  Structure of the N-terminal oligomerization domain of DnaD reveals a unique tetramerization motif and provides insights into scaffold formation.

Authors:  S Schneider; W Zhang; P Soultanas; M Paoli
Journal:  J Mol Biol       Date:  2007-12-28       Impact factor: 5.469

5.  When simple sequence comparison fails: the cryptic case of the shared domains of the bacterial replication initiation proteins DnaB and DnaD.

Authors:  Farhat Y Marston; William H Grainger; Wiep Klaas Smits; Nicholas H Hopcroft; Matthew Green; Andrea M Hounslow; Alan D Grossman; C Jeremy Craven; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2010-06-28       Impact factor: 16.971

6.  Regulation of DNA Binding and High-Order Oligomerization of the DnaB Helicase Loader.

Authors:  Lindsay A Matthews; Lyle A Simmons
Journal:  J Bacteriol       Date:  2020-10-08       Impact factor: 3.490

Review 7.  Chromosomal replication initiation machinery of low-G+C-content Firmicutes.

Authors:  Geoffrey S Briggs; Wiep Klaas Smits; Panos Soultanas
Journal:  J Bacteriol       Date:  2012-07-13       Impact factor: 3.490

Review 8.  Loading mechanisms of ring helicases at replication origins.

Authors:  Panos Soultanas
Journal:  Mol Microbiol       Date:  2012-03-15       Impact factor: 3.501

9.  Intragenic and extragenic suppressors of temperature sensitive mutations in the replication initiation genes dnaD and dnaB of Bacillus subtilis.

Authors:  Megan E Rokop; Alan D Grossman
Journal:  PLoS One       Date:  2009-08-26       Impact factor: 3.240

10.  DnaB proteolysis in vivo regulates oligomerization and its localization at oriC in Bacillus subtilis.

Authors:  William H Grainger; Cristina Machón; David J Scott; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2010-01-13       Impact factor: 16.971

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