Literature DB >> 22797727

Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.

Yukinori Okada1, Xueling Sim, Min Jin Go, Jer-Yuarn Wu, Dongfeng Gu, Fumihiko Takeuchi, Atsushi Takahashi, Shiro Maeda, Tatsuhiko Tsunoda, Peng Chen, Su-Chi Lim, Tien-Yin Wong, Jianjun Liu, Terri L Young, Tin Aung, Mark Seielstad, Yik-Ying Teo, Young Jin Kim, Jong-Young Lee, Bok-Ghee Han, Daehee Kang, Chien-Hsiun Chen, Fuu-Jen Tsai, Li-Ching Chang, S-J Cathy Fann, Hao Mei, Dabeeru C Rao, James E Hixson, Shufeng Chen, Tomohiro Katsuya, Masato Isono, Toshio Ogihara, John C Chambers, Weihua Zhang, Jaspal S Kooner, Eva Albrecht, Kazuhiko Yamamoto, Michiaki Kubo, Yusuke Nakamura, Naoyuki Kamatani, Norihiro Kato, Jiang He, Yuan-Tsong Chen, Yoon Shin Cho, E-Shyong Tai, Toshihiro Tanaka.   

Abstract

Chronic kidney disease (CKD), impairment of kidney function, is a serious public health problem, and the assessment of genetic factors influencing kidney function has substantial clinical relevance. Here, we report a meta-analysis of genome-wide association studies for kidney function-related traits, including 71,149 east Asian individuals from 18 studies in 11 population-, hospital- or family-based cohorts, conducted as part of the Asian Genetic Epidemiology Network (AGEN). Our meta-analysis identified 17 loci newly associated with kidney function-related traits, including the concentrations of blood urea nitrogen, uric acid and serum creatinine and estimated glomerular filtration rate based on serum creatinine levels (eGFRcrea) (P < 5.0 × 10(-8)). We further examined these loci with in silico replication in individuals of European ancestry from the KidneyGen, CKDGen and GUGC consortia, including a combined total of ∼110,347 individuals. We identify pleiotropic associations among these loci with kidney function-related traits and risk of CKD. These findings provide new insights into the genetics of kidney function.

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Year:  2012        PMID: 22797727      PMCID: PMC4737645          DOI: 10.1038/ng.2352

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  33 in total

1.  Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium.

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Journal:  Nature       Date:  1999-10-28       Impact factor: 49.962

Review 2.  The BioBank Japan Project.

Authors:  Yusuke Nakamura
Journal:  Clin Adv Hematol Oncol       Date:  2007-09

3.  Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.

Authors:  Young Jin Kim; Min Jin Go; Cheng Hu; Chang Bum Hong; Yun Kyoung Kim; Ji Young Lee; Joo-Yeon Hwang; Ji Hee Oh; Dong-Joon Kim; Nam Hee Kim; Soeui Kim; Eun Jung Hong; Ji-Hyun Kim; Haesook Min; Yeonjung Kim; Rong Zhang; Weiping Jia; Yukinori Okada; Atsushi Takahashi; Michiaki Kubo; Toshihiro Tanaka; Naoyuki Kamatani; Koichi Matsuda; Taesung Park; Bermseok Oh; Kuchan Kimm; Daehee Kang; Chol Shin; Nam H Cho; Hyung-Lae Kim; Bok-Ghee Han; Jong-Young Lee; Yoon Shin Cho
Journal:  Nat Genet       Date:  2011-09-11       Impact factor: 38.330

4.  Paired-related murine homeobox gene expressed in the developing sclerotome, kidney, and nervous system.

Authors:  A Mansouri; Y Yokota; R Wehr; N G Copeland; N A Jenkins; P Gruss
Journal:  Dev Dyn       Date:  1997-09       Impact factor: 3.780

5.  Modification of the CKD epidemiology collaboration (CKD-EPI) equation for Japanese: accuracy and use for population estimates.

Authors:  Masaru Horio; Enyu Imai; Yoshinari Yasuda; Tsuyoshi Watanabe; Seiichi Matsuo
Journal:  Am J Kidney Dis       Date:  2010-04-22       Impact factor: 8.860

6.  Genetic loci influencing kidney function and chronic kidney disease.

Authors:  John C Chambers; Weihua Zhang; Graham M Lord; Pim van der Harst; Debbie A Lawlor; Joban S Sehmi; Daniel P Gale; Mark N Wass; Kourosh R Ahmadi; Stephan J L Bakker; Jacqui Beckmann; Henk J G Bilo; Murielle Bochud; Morris J Brown; Mark J Caulfield; John M C Connell; H Terence Cook; Ioana Cotlarciuc; George Davey Smith; Ranil de Silva; Guohong Deng; Olivier Devuyst; Lambert D Dikkeschei; Nada Dimkovic; Mark Dockrell; Anna Dominiczak; Shah Ebrahim; Thomas Eggermann; Martin Farrall; Luigi Ferrucci; Jurgen Floege; Nita G Forouhi; Ron T Gansevoort; Xijin Han; Bo Hedblad; Jaap J Homan van der Heide; Bouke G Hepkema; Maria Hernandez-Fuentes; Elina Hypponen; Toby Johnson; Paul E de Jong; Nanne Kleefstra; Vasiliki Lagou; Marta Lapsley; Yun Li; Ruth J F Loos; Jian'an Luan; Karin Luttropp; Céline Maréchal; Olle Melander; Patricia B Munroe; Louise Nordfors; Afshin Parsa; Leena Peltonen; Brenda W Penninx; Esperanza Perucha; Anneli Pouta; Inga Prokopenko; Paul J Roderick; Aimo Ruokonen; Nilesh J Samani; Serena Sanna; Martin Schalling; David Schlessinger; Georg Schlieper; Marc A J Seelen; Alan R Shuldiner; Marketa Sjögren; Johannes H Smit; Harold Snieder; Nicole Soranzo; Timothy D Spector; Peter Stenvinkel; Michael J E Sternberg; Ramasamyiyer Swaminathan; Toshiko Tanaka; Lielith J Ubink-Veltmaat; Manuela Uda; Peter Vollenweider; Chris Wallace; Dawn Waterworth; Klaus Zerres; Gerard Waeber; Nicholas J Wareham; Patrick H Maxwell; Mark I McCarthy; Marjo-Riitta Jarvelin; Vincent Mooser; Goncalo R Abecasis; Liz Lightstone; James Scott; Gerjan Navis; Paul Elliott; Jaspal S Kooner
Journal:  Nat Genet       Date:  2010-04-11       Impact factor: 38.330

7.  New loci associated with kidney function and chronic kidney disease.

Authors:  Anna Köttgen; Cristian Pattaro; Carsten A Böger; Christian Fuchsberger; Matthias Olden; Nicole L Glazer; Afshin Parsa; Xiaoyi Gao; Qiong Yang; Albert V Smith; Jeffrey R O'Connell; Man Li; Helena Schmidt; Toshiko Tanaka; Aaron Isaacs; Shamika Ketkar; Shih-Jen Hwang; Andrew D Johnson; Abbas Dehghan; Alexander Teumer; Guillaume Paré; Elizabeth J Atkinson; Tanja Zeller; Kurt Lohman; Marilyn C Cornelis; Nicole M Probst-Hensch; Florian Kronenberg; Anke Tönjes; Caroline Hayward; Thor Aspelund; Gudny Eiriksdottir; Lenore J Launer; Tamara B Harris; Evadnie Rampersaud; Braxton D Mitchell; Dan E Arking; Eric Boerwinkle; Maksim Struchalin; Margherita Cavalieri; Andrew Singleton; Francesco Giallauria; Jeffrey Metter; Ian H de Boer; Talin Haritunians; Thomas Lumley; David Siscovick; Bruce M Psaty; M Carola Zillikens; Ben A Oostra; Mary Feitosa; Michael Province; Mariza de Andrade; Stephen T Turner; Arne Schillert; Andreas Ziegler; Philipp S Wild; Renate B Schnabel; Sandra Wilde; Thomas F Munzel; Tennille S Leak; Thomas Illig; Norman Klopp; Christa Meisinger; H-Erich Wichmann; Wolfgang Koenig; Lina Zgaga; Tatijana Zemunik; Ivana Kolcic; Cosetta Minelli; Frank B Hu; Asa Johansson; Wilmar Igl; Ghazal Zaboli; Sarah H Wild; Alan F Wright; Harry Campbell; David Ellinghaus; Stefan Schreiber; Yurii S Aulchenko; Janine F Felix; Fernando Rivadeneira; Andre G Uitterlinden; Albert Hofman; Medea Imboden; Dorothea Nitsch; Anita Brandstätter; Barbara Kollerits; Lyudmyla Kedenko; Reedik Mägi; Michael Stumvoll; Peter Kovacs; Mladen Boban; Susan Campbell; Karlhans Endlich; Henry Völzke; Heyo K Kroemer; Matthias Nauck; Uwe Völker; Ozren Polasek; Veronique Vitart; Sunita Badola; Alexander N Parker; Paul M Ridker; Sharon L R Kardia; Stefan Blankenberg; Yongmei Liu; Gary C Curhan; Andre Franke; Thierry Rochat; Bernhard Paulweber; Inga Prokopenko; Wei Wang; Vilmundur Gudnason; Alan R Shuldiner; Josef Coresh; Reinhold Schmidt; Luigi Ferrucci; Michael G Shlipak; Cornelia M van Duijn; Ingrid Borecki; Bernhard K Krämer; Igor Rudan; Ulf Gyllensten; James F Wilson; Jacqueline C Witteman; Peter P Pramstaller; Rainer Rettig; Nick Hastie; Daniel I Chasman; W H Kao; Iris M Heid; Caroline S Fox
Journal:  Nat Genet       Date:  2010-04-11       Impact factor: 38.330

8.  Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.

Authors:  Yukinori Okada; Tomomitsu Hirota; Yoichiro Kamatani; Atsushi Takahashi; Hiroko Ohmiya; Natsuhiko Kumasaka; Koichiro Higasa; Yumi Yamaguchi-Kabata; Naoya Hosono; Michael A Nalls; Ming Huei Chen; Frank J A van Rooij; Albert V Smith; Toshiko Tanaka; David J Couper; Neil A Zakai; Luigi Ferrucci; Dan L Longo; Dena G Hernandez; Jacqueline C M Witteman; Tamara B Harris; Christopher J O'Donnell; Santhi K Ganesh; Koichi Matsuda; Tatsuhiko Tsunoda; Toshihiro Tanaka; Michiaki Kubo; Yusuke Nakamura; Mayumi Tamari; Kazuhiko Yamamoto; Naoyuki Kamatani
Journal:  PLoS Genet       Date:  2011-06-30       Impact factor: 5.917

9.  Meta-analysis identifies common variants associated with body mass index in east Asians.

Authors:  Wanqing Wen; Yoon-Shin Cho; Wei Zheng; Rajkumar Dorajoo; Norihiro Kato; Lu Qi; Chien-Hsiun Chen; Ryan J Delahanty; Yukinori Okada; Yasuharu Tabara; Dongfeng Gu; Dingliang Zhu; Christopher A Haiman; Zengnan Mo; Yu-Tang Gao; Seang-Mei Saw; Min-Jin Go; Fumihiko Takeuchi; Li-Ching Chang; Yoshihiro Kokubo; Jun Liang; Mei Hao; Loïc Le Marchand; Yi Zhang; Yanling Hu; Tien-Yin Wong; Jirong Long; Bok-Ghee Han; Michiaki Kubo; Ken Yamamoto; Mei-Hsin Su; Tetsuro Miki; Brian E Henderson; Huaidong Song; Aihua Tan; Jiang He; Daniel P-K Ng; Qiuyin Cai; Tatsuhiko Tsunoda; Fuu-Jen Tsai; Naoharu Iwai; Gary K Chen; Jiajun Shi; Jianfeng Xu; Xueling Sim; Yong-Bing Xiang; Shiro Maeda; Rick T H Ong; Chun Li; Yusuke Nakamura; Tin Aung; Naoyuki Kamatani; Jian-Jun Liu; Wei Lu; Mitsuhiro Yokota; Mark Seielstad; Cathy S J Fann; Jer-Yuarn Wu; Jong-Young Lee; Frank B Hu; Toshihiro Tanaka; E Shyong Tai; Xiao-Ou Shu
Journal:  Nat Genet       Date:  2012-02-19       Impact factor: 38.330

10.  Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.

Authors:  Melanie Kolz; Toby Johnson; Serena Sanna; Alexander Teumer; Veronique Vitart; Markus Perola; Massimo Mangino; Eva Albrecht; Chris Wallace; Martin Farrall; Asa Johansson; Dale R Nyholt; Yurii Aulchenko; Jacques S Beckmann; Sven Bergmann; Murielle Bochud; Morris Brown; Harry Campbell; John Connell; Anna Dominiczak; Georg Homuth; Claudia Lamina; Mark I McCarthy; Thomas Meitinger; Vincent Mooser; Patricia Munroe; Matthias Nauck; John Peden; Holger Prokisch; Perttu Salo; Veikko Salomaa; Nilesh J Samani; David Schlessinger; Manuela Uda; Uwe Völker; Gérard Waeber; Dawn Waterworth; Rui Wang-Sattler; Alan F Wright; Jerzy Adamski; John B Whitfield; Ulf Gyllensten; James F Wilson; Igor Rudan; Peter Pramstaller; Hugh Watkins; Angela Doering; H-Erich Wichmann; Tim D Spector; Leena Peltonen; Henry Völzke; Ramaiah Nagaraja; Peter Vollenweider; Mark Caulfield; Thomas Illig; Christian Gieger
Journal:  PLoS Genet       Date:  2009-06-05       Impact factor: 5.917

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  154 in total

Review 1.  High-Diversity Mouse Populations for Complex Traits.

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2.  Generalizability of genetic findings related to kidney function and albuminuria.

Authors:  Afshin Parsa; Barry I Freedman
Journal:  Clin J Am Soc Nephrol       Date:  2013-12-05       Impact factor: 8.237

3.  Additive, epistatic, and environmental effects through the lens of expression variability QTL in a twin cohort.

Authors:  Gang Wang; Ence Yang; Candice L Brinkmeyer-Langford; James J Cai
Journal:  Genetics       Date:  2013-12-02       Impact factor: 4.562

Review 4.  Epigenomics: the science of no-longer-junk DNA. Why study it in chronic kidney disease?

Authors:  Yi-An Ko; Katalin Susztak
Journal:  Semin Nephrol       Date:  2013-07       Impact factor: 5.299

5.  A common variant of MAF/c-MAF, transcriptional factor gene in the kidney, is associated with gout susceptibility.

Authors:  Toshihide Higashino; Hirotaka Matsuo; Yukinori Okada; Hiroshi Nakashima; Seiko Shimizu; Masayuki Sakiyama; Shin Tadokoro; Akiyoshi Nakayama; Makoto Kawaguchi; Mako Komatsu; Asahi Hishida; Masahiro Nakatochi; Hiroshi Ooyama; Junko Imaki; Nariyoshi Shinomiya
Journal:  Hum Cell       Date:  2017-10-28       Impact factor: 4.174

Review 6.  The UMOD Locus: Insights into the Pathogenesis and Prognosis of Kidney Disease.

Authors:  Olivier Devuyst; Cristian Pattaro
Journal:  J Am Soc Nephrol       Date:  2017-11-27       Impact factor: 10.121

7.  SOS2 and ACP1 Loci Identified through Large-Scale Exome Chip Analysis Regulate Kidney Development and Function.

Authors:  Man Li; Yong Li; Olivia Weeks; Vladan Mijatovic; Alexander Teumer; Jennifer E Huffman; Gerard Tromp; Christian Fuchsberger; Mathias Gorski; Leo-Pekka Lyytikäinen; Teresa Nutile; Sanaz Sedaghat; Rossella Sorice; Adrienne Tin; Qiong Yang; Tarunveer S Ahluwalia; Dan E Arking; Nathan A Bihlmeyer; Carsten A Böger; Robert J Carroll; Daniel I Chasman; Marilyn C Cornelis; Abbas Dehghan; Jessica D Faul; Mary F Feitosa; Giovanni Gambaro; Paolo Gasparini; Franco Giulianini; Iris Heid; Jinyan Huang; Medea Imboden; Anne U Jackson; Janina Jeff; Min A Jhun; Ronit Katz; Annette Kifley; Tuomas O Kilpeläinen; Ashish Kumar; Markku Laakso; Ruifang Li-Gao; Kurt Lohman; Yingchang Lu; Reedik Mägi; Giovanni Malerba; Evelin Mihailov; Karen L Mohlke; Dennis O Mook-Kanamori; Antonietta Robino; Douglas Ruderfer; Erika Salvi; Ursula M Schick; Christina-Alexandra Schulz; Albert V Smith; Jennifer A Smith; Michela Traglia; Laura M Yerges-Armstrong; Wei Zhao; Mark O Goodarzi; Aldi T Kraja; Chunyu Liu; Jennifer Wessel; Eric Boerwinkle; Ingrid B Borecki; Jette Bork-Jensen; Erwin P Bottinger; Daniele Braga; Ivan Brandslund; Jennifer A Brody; Archie Campbell; David J Carey; Cramer Christensen; Josef Coresh; Errol Crook; Gary C Curhan; Daniele Cusi; Ian H de Boer; Aiko P J de Vries; Joshua C Denny; Olivier Devuyst; Albert W Dreisbach; Karlhans Endlich; Tõnu Esko; Oscar H Franco; Tibor Fulop; Glenn S Gerhard; Charlotte Glümer; Omri Gottesman; Niels Grarup; Vilmundur Gudnason; Torben Hansen; Tamara B Harris; Caroline Hayward; Lynne Hocking; Albert Hofman; Frank B Hu; Lise Lotte N Husemoen; Rebecca D Jackson; Torben Jørgensen; Marit E Jørgensen; Mika Kähönen; Sharon L R Kardia; Wolfgang König; Charles Kooperberg; Jennifer Kriebel; Lenore J Launer; Torsten Lauritzen; Terho Lehtimäki; Daniel Levy; Pamela Linksted; Allan Linneberg; Yongmei Liu; Ruth J F Loos; Antonio Lupo; Christine Meisinger; Olle Melander; Andres Metspalu; Paul Mitchell; Matthias Nauck; Peter Nürnberg; Marju Orho-Melander; Afshin Parsa; Oluf Pedersen; Annette Peters; Ulrike Peters; Ozren Polasek; David Porteous; Nicole M Probst-Hensch; Bruce M Psaty; Lu Qi; Olli T Raitakari; Alex P Reiner; Rainer Rettig; Paul M Ridker; Fernando Rivadeneira; Jacques E Rossouw; Frank Schmidt; David Siscovick; Nicole Soranzo; Konstantin Strauch; Daniela Toniolo; Stephen T Turner; André G Uitterlinden; Sheila Ulivi; Dinesh Velayutham; Uwe Völker; Henry Völzke; Melanie Waldenberger; Jie Jin Wang; David R Weir; Daniel Witte; Helena Kuivaniemi; Caroline S Fox; Nora Franceschini; Wolfram Goessling; Anna Köttgen; Audrey Y Chu
Journal:  J Am Soc Nephrol       Date:  2016-12-05       Impact factor: 10.121

Review 8.  The systems biology of uric acid transporters: the role of remote sensing and signaling.

Authors:  Sanjay K Nigam; Vibha Bhatnagar
Journal:  Curr Opin Nephrol Hypertens       Date:  2018-07       Impact factor: 2.894

9.  The relationship between body mass index and uric acid: a study on Japanese adult twins.

Authors:  Kentaro Tanaka; Soshiro Ogata; Haruka Tanaka; Kayoko Omura; Chika Honda; Kazuo Hayakawa
Journal:  Environ Health Prev Med       Date:  2015-06-03       Impact factor: 3.674

10.  The Daniel K. Inouye College of Pharmacy Scripts: Perspectives on the Epidemiology of Gout and Hyperuricemia.

Authors:  Youssef M Roman
Journal:  Hawaii J Med Public Health       Date:  2019-02
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