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Literature DB >> 22781691

Compressive genomics.

Po-Ru Loh¹, Michael Baym, Bonnie Berger.

Abstract

Mesh：

Year: 2012 PMID： 22781691 DOI： 10.1038/nbt.2241

Source DB: PubMed Journal: Nat Biotechnol ISSN： 1087-0156 Impact factor: 54.908

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20 in total

1. BLAT--the BLAST-like alignment tool.

Authors: W James Kent
Journal: Genome Res Date: 2002-04 Impact factor: 9.043

2. DNACompress: fast and effective DNA sequence compression.

Authors: Xin Chen; Ming Li; Bin Ma; John Tromp
Journal: Bioinformatics Date: 2002-12 Impact factor: 6.937

3. Basic local alignment search tool.

Authors: S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal: J Mol Biol Date: 1990-10-05 Impact factor: 5.469

Review 4. High-throughput DNA sequencing--concepts and limitations.

Authors: Martin Kircher; Janet Kelso
Journal: Bioessays Date: 2010-06 Impact factor: 4.345

5. Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Authors: Heng Li; Jue Ruan; Richard Durbin
Journal: Genome Res Date: 2008-08-19 Impact factor: 9.043

6. Human genomes as email attachments.

Authors: Scott Christley; Yiming Lu; Chen Li; Xiaohui Xie
Journal: Bioinformatics Date: 2008-11-07 Impact factor: 6.937

7. On the future of genomic data.

Authors: Scott D Kahn
Journal: Science Date: 2011-02-11 Impact factor: 47.728

8. Robust relative compression of genomes with random access.

Authors: Sebastian Deorowicz; Szymon Grabowski
Journal: Bioinformatics Date: 2011-09-05 Impact factor: 6.937

9. Cloud computing and the DNA data race.

Authors: Michael C Schatz; Ben Langmead; Steven L Salzberg
Journal: Nat Biotechnol Date: 2010-07 Impact factor: 54.908

10. FlyBase: enhancing Drosophila Gene Ontology annotations.

Authors: Susan Tweedie; Michael Ashburner; Kathleen Falls; Paul Leyland; Peter McQuilton; Steven Marygold; Gillian Millburn; David Osumi-Sutherland; Andrew Schroeder; Ruth Seal; Haiyan Zhang
Journal: Nucleic Acids Res Date: 2008-10-23 Impact factor: 16.971

39 in total

Compressive genomics.

1. BLAT--the BLAST-like alignment tool.

2. DNACompress: fast and effective DNA sequence compression.

3. Basic local alignment search tool.

Review 4. High-throughput DNA sequencing--concepts and limitations.

5. Mapping short DNA sequencing reads and calling variants using mapping quality scores.

6. Human genomes as email attachments.

7. On the future of genomic data.

8. Robust relative compression of genomes with random access.

9. Cloud computing and the DNA data race.

10. FlyBase: enhancing Drosophila Gene Ontology annotations.

1. smallWig: parallel compression of RNA-seq WIG files.

2. Compressive mapping for next-generation sequencing.

3. Quality score compression improves genotyping accuracy.

4. Short Read Mapping: An Algorithmic Tour.

5. Merging of multi-string BWTs with applications.

6. Fast genotyping of known SNPs through approximate k-mer matching.

7. Entropy-scaling search of massive biological data.

8. Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification.

9. Federation in genomics pipelines: techniques and challenges.

Review 10. Computational solutions for omics data.