Literature DB >> 12490460

DNACompress: fast and effective DNA sequence compression.

Xin Chen1, Ming Li, Bin Ma, John Tromp.   

Abstract

While achieving the best compression ratios for DNA sequences, our new DNACompress program significantly improves the running time of all previous DNA compression programs.

Mesh：

Year:  2002        PMID： 12490460     DOI： 10.1093/bioinformatics/18.12.1696

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  41 in total

1.  Compressive genomics.

Authors:  Po-Ru Loh; Michael Baym; Bonnie Berger
Journal:  Nat Biotechnol       Date:  2012-07-10       Impact factor: 54.908

2.  MicroRNA target detection and analysis for genes related to breast cancer using MDLcompress.

Authors:  Scott C Evans; Antonis Kourtidis; T Stephen Markham; Jonathan Miller; Douglas S Conklin; Andrew S Torres
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

3.  Data structures and compression algorithms for genomic sequence data.

Authors:  Marty C Brandon; Douglas C Wallace; Pierre Baldi
Journal:  Bioinformatics       Date:  2009-05-15       Impact factor: 6.937

4.  A genomic distance based on MUM indicates discontinuity between most bacterial species and genera.

Authors:  Marc Deloger; Meriem El Karoui; Marie-Agnès Petit
Journal:  J Bacteriol       Date:  2008-10-31       Impact factor: 3.490

5.  Efficient storage of high throughput DNA sequencing data using reference-based compression.

Authors:  Markus Hsi-Yang Fritz; Rasko Leinonen; Guy Cochrane; Ewan Birney
Journal:  Genome Res       Date:  2011-01-18       Impact factor: 9.043

6.  Compressing genomic sequence fragments using SlimGene.

Authors:  Christos Kozanitis; Chris Saunders; Semyon Kruglyak; Vineet Bafna; George Varghese
Journal:  J Comput Biol       Date:  2011-03       Impact factor: 1.479

7.  BIND - an algorithm for loss-less compression of nucleotide sequence data.

Authors:  Tungadri Bose; Monzoorul Haque Mohammed; Anirban Dutta; Sharmila S Mande
Journal:  J Biosci       Date:  2012-09       Impact factor: 1.826

8.  Personal genomic information management and personalized medicine: challenges, current solutions, and roles of HIM professionals.

Authors:  Amal Alzu'bi; Leming Zhou; Valerie Watzlaf
Journal:  Perspect Health Inf Manag       Date:  2014-04-01

9.  iDoComp: a compression scheme for assembled genomes.

Authors:  Idoia Ochoa; Mikel Hernaez; Tsachy Weissman
Journal:  Bioinformatics       Date:  2014-10-24       Impact factor: 6.937

10.  Differential direct coding: a compression algorithm for nucleotide sequence data.

Authors:  Gregory Vey
Journal:  Database (Oxford)       Date:  2009-09-14       Impact factor: 3.451
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