Literature DB >> 22772975

Spike detection and clustering with unsupervised wavelet optimization in extracellular neural recordings.

Vahid Shalchyan1, Winnie Jensen, Dario Farina.   

Abstract

Automatic and accurate detection of action potentials of unknown waveforms in noisy extracellular neural recordings is an important requirement for developing brain-computer interfaces. This study introduces a new, wavelet-based manifestation variable that combines the wavelet shrinkage denoising with multiscale edge detection for robustly detecting and finding the occurrence time of action potentials in noisy signals. To further improve the detection performance by eliminating the dependence of the method to the choice of the mother wavelet, we propose an unsupervised optimization for best basis selection. Moreover, another unsupervised criterion based on a correlation similarity measure was defined to update the wavelet selection during the clustering to improve the spike sorting performance. The proposed method was compared to several previously proposed methods by using a wide range of realistic simulated data as well as selected experimental recordings of intracortical signals from freely moving rats. The detection performance of the proposed method substantially surpassed previous methods for all signals tested. Moreover, updating the wavelet selection for the clustering task was shown to improve the classification performance with respect to maintaining the same wavelet as for the detection stage.

Entities:  

Mesh:

Year:  2012        PMID: 22772975     DOI: 10.1109/TBME.2012.2204991

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  6 in total

1.  Denoising and compression of intracortical signals with a modified MDL criterion.

Authors:  Elias S G Carotti; Vahid Shalchyan; Winnie Jensen; Dario Farina
Journal:  Med Biol Eng Comput       Date:  2014-03-18       Impact factor: 2.602

2.  Wavelet methodology to improve single unit isolation in primary motor cortex cells.

Authors:  Alexis Ortiz-Rosario; Hojjat Adeli; John A Buford
Journal:  J Neurosci Methods       Date:  2015-03-17       Impact factor: 2.390

3.  MUSIC-Expected maximization gaussian mixture methodology for clustering and detection of task-related neuronal firing rates.

Authors:  Alexis Ortiz-Rosario; Hojjat Adeli; John A Buford
Journal:  Behav Brain Res       Date:  2016-09-17       Impact factor: 3.332

4.  A facile and comprehensive algorithm for electrical response identification in mouse retinal ganglion cells.

Authors:  Wanying Li; Shan Qin; Yijie Lu; Hao Wang; Zhen Xu; Tianzhun Wu
Journal:  PLoS One       Date:  2021-03-11       Impact factor: 3.240

5.  Identification of a self-paced hitting task in freely moving rats based on adaptive spike detection from multi-unit M1 cortical signals.

Authors:  Sofyan H H Hammad; Dario Farina; Ernest N Kamavuako; Winnie Jensen
Journal:  Front Neuroeng       Date:  2013-11-15

6.  Extracting wavelet based neural features from human intracortical recordings for neuroprosthetics applications.

Authors:  Mingming Zhang; Michael A Schwemmer; Jordyn E Ting; Connor E Majstorovic; David A Friedenberg; Marcia A Bockbrader; W Jerry Mysiw; Ali R Rezai; Nicholas V Annetta; Chad E Bouton; Herbert S Bresler; Gaurav Sharma
Journal:  Bioelectron Med       Date:  2018-07-31
  6 in total

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