Literature DB >> 22768835

Metabolic regulation of epigenetics.

Chao Lu1, Craig B Thompson.   

Abstract

How cells sense and respond to environmental cues remains a central question of biological research. Recent evidence suggests that DNA transcription is regulated by chromatin organization. However, the mechanism for relaying the cytoplasmic signaling to chromatin remodeling remains incompletely understood. Although much emphasis has been put on delineating transcriptional output of growth factor/hormonal signaling pathways, accumulated evidence from yeast and mammalian systems suggest that metabolic signals also play critical roles in determining chromatin structure. Here we summarize recent progress in understanding the molecular connection between metabolism and epigenetic modifications of chromatin implicated in a variety of diseases including cancer.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22768835      PMCID: PMC3392647          DOI: 10.1016/j.cmet.2012.06.001

Source DB:  PubMed          Journal:  Cell Metab        ISSN: 1550-4131            Impact factor:   27.287


  91 in total

1.  Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.

Authors:  Benjamin P Tu; Andrzej Kudlicki; Maga Rowicka; Steven L McKnight
Journal:  Science       Date:  2005-10-27       Impact factor: 47.728

2.  Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation.

Authors:  Gunn-Guang Liou; Jason C Tanny; Ryan G Kruger; Thomas Walz; Danesh Moazed
Journal:  Cell       Date:  2005-05-20       Impact factor: 41.582

3.  Epigenetic stem cell signature in cancer.

Authors:  Martin Widschwendter; Heidi Fiegl; Daniel Egle; Elisabeth Mueller-Holzner; Gilbert Spizzo; Christian Marth; Daniel J Weisenberger; Mihaela Campan; Joanne Young; Ian Jacobs; Peter W Laird
Journal:  Nat Genet       Date:  2006-12-31       Impact factor: 38.330

4.  Disrupted fat absorption attenuates obesity induced by a high-fat diet in Clock mutant mice.

Authors:  Katsutaka Oishi; Gen-Ichi Atsumi; Shinobu Sugiyama; Ikuko Kodomari; Manami Kasamatsu; Kazuhiko Machida; Norio Ishida
Journal:  FEBS Lett       Date:  2005-12-06       Impact factor: 4.124

5.  A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing.

Authors:  Joyce E Ohm; Kelly M McGarvey; Xiaobing Yu; Linzhao Cheng; Kornel E Schuebel; Leslie Cope; Helai P Mohammad; Wei Chen; Vincent C Daniel; Wayne Yu; David M Berman; Thomas Jenuwein; Kevin Pruitt; Saul J Sharkis; D Neil Watkins; James G Herman; Stephen B Baylin
Journal:  Nat Genet       Date:  2007-01-09       Impact factor: 38.330

6.  Nutritional epigenetics: impact of folate deficiency on DNA methylation and colon cancer susceptibility.

Authors:  Young-In Kim
Journal:  J Nutr       Date:  2005-11       Impact factor: 4.798

7.  Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription.

Authors:  Hidekazu Takahashi; J Michael McCaffery; Rafael A Irizarry; Jef D Boeke
Journal:  Mol Cell       Date:  2006-07-21       Impact factor: 17.970

8.  Histone demethylation mediated by the nuclear amine oxidase homolog LSD1.

Authors:  Yujiang Shi; Fei Lan; Caitlin Matson; Peter Mulligan; Johnathan R Whetstine; Philip A Cole; Robert A Casero; Yang Shi
Journal:  Cell       Date:  2004-12-29       Impact factor: 41.582

9.  Obesity and metabolic syndrome in circadian Clock mutant mice.

Authors:  Fred W Turek; Corinne Joshu; Akira Kohsaka; Emily Lin; Ganka Ivanova; Erin McDearmon; Aaron Laposky; Sue Losee-Olson; Amy Easton; Dalan R Jensen; Robert H Eckel; Joseph S Takahashi; Joseph Bass
Journal:  Science       Date:  2005-04-21       Impact factor: 47.728

10.  BMAL1 and CLOCK, two essential components of the circadian clock, are involved in glucose homeostasis.

Authors:  R Daniel Rudic; Peter McNamara; Anne-Maria Curtis; Raymond C Boston; Satchidananda Panda; John B Hogenesch; Garret A Fitzgerald
Journal:  PLoS Biol       Date:  2004-11-02       Impact factor: 8.029

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  281 in total

Review 1.  MYC: connecting selective transcriptional control to global RNA production.

Authors:  Theresia R Kress; Arianna Sabò; Bruno Amati
Journal:  Nat Rev Cancer       Date:  2015-09-18       Impact factor: 60.716

Review 2.  Exploring the emerging complexity in transcriptional regulation of energy homeostasis.

Authors:  Adelheid Lempradl; J Andrew Pospisilik; Josef M Penninger
Journal:  Nat Rev Genet       Date:  2015-10-13       Impact factor: 53.242

Review 3.  Transcriptional regulation of T cell metabolism.

Authors:  Kenneth P Hough; Danielle A Chisolm; Amy S Weinmann
Journal:  Mol Immunol       Date:  2015-08-19       Impact factor: 4.407

4.  In Vivo Metabolic Tracing Demonstrates the Site-Specific Contribution of Hepatic Ethanol Metabolism to Histone Acetylation.

Authors:  Crystina L Kriss; Emily Gregory-Lott; Aaron J Storey; Alan J Tackett; Wayne P Wahls; Stanley M Stevens
Journal:  Alcohol Clin Exp Res       Date:  2018-08-16       Impact factor: 3.455

5.  Nicotinamide metabolism regulates glioblastoma stem cell maintenance.

Authors:  Jinkyu Jung; Leo Jy Kim; Xiuxing Wang; Qiulian Wu; Tanwarat Sanvoranart; Christopher G Hubert; Briana C Prager; Lisa C Wallace; Xun Jin; Stephen C Mack; Jeremy N Rich
Journal:  JCI Insight       Date:  2017-05-18

Review 6.  Citrate chemistry and biology for biomaterials design.

Authors:  Chuying Ma; Ethan Gerhard; Di Lu; Jian Yang
Journal:  Biomaterials       Date:  2018-05-04       Impact factor: 12.479

7.  DNMT3a epigenetic program regulates the HIF-2α oxygen-sensing pathway and the cellular response to hypoxia.

Authors:  Gabriel Lachance; James Uniacke; Timothy E Audas; Chet E Holterman; Aleksandra Franovic; Josianne Payette; Stephen Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-09       Impact factor: 11.205

Review 8.  Metabolic Alterations in Cancer and Their Potential as Therapeutic Targets.

Authors:  Jamie D Weyandt; Craig B Thompson; Amato J Giaccia; W Kimryn Rathmell
Journal:  Am Soc Clin Oncol Educ Book       Date:  2017

9.  mTORC2 Responds to Glutamine Catabolite Levels to Modulate the Hexosamine Biosynthesis Enzyme GFAT1.

Authors:  Joseph G Moloughney; Peter K Kim; Nicole M Vega-Cotto; Chang-Chih Wu; Sisi Zhang; Matthew Adlam; Thomas Lynch; Po-Chien Chou; Joshua D Rabinowitz; Guy Werlen; Estela Jacinto
Journal:  Mol Cell       Date:  2016-08-25       Impact factor: 17.970

Review 10.  MOTS-c: A Mitochondrial-Encoded Regulator of the Nucleus.

Authors:  Bérénice A Benayoun; Changhan Lee
Journal:  Bioessays       Date:  2019-08-05       Impact factor: 4.345

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