Literature DB >> 22759816

Unstable microsatellite repeats facilitate rapid evolution of coding and regulatory sequences.

A Jansen1, R Gemayel, K J Verstrepen.   

Abstract

Tandem repeats are intrinsically highly variable sequences since repeat units are often lost or gained during replication or following unequal recombination events. Because of their low complexity and their instability, these repeats, which are also called satellite repeats, are often considered to be useless 'junk' DNA. However, recent findings show that tandem repeats are frequently found within promoters of stress-induced genes and within the coding regions of genes encoding cell-surface and regulatory proteins. Interestingly, frequent changes in these repeats often confer phenotypic variability. Examples include variation in the microbial cell surface, rapid tuning of internal molecular clocks in flies, and enhanced morphological plasticity in mammals. This suggests that instead of being useless junk DNA, some variable tandem repeats are useful functional elements that confer 'evolvability', facilitating swift evolution and rapid adaptation to changing environments. Since changes in repeats are frequent and reversible, repeats provide a unique type of mutation that bridges the gap between rare genetic mutations, such as single nucleotide polymorphisms, and highly unstable but reversible epigenetic inheritance.
Copyright © 2012 S. Karger AG, Basel.

Mesh:

Substances:

Year:  2012        PMID: 22759816     DOI: 10.1159/000337121

Source DB:  PubMed          Journal:  Genome Dyn        ISSN: 1660-9263


  17 in total

1.  Dominant and Protective Role of the CYTH4 Primate-Specific GTTT-Repeat Longer Alleles Against Neurodegeneration.

Authors:  M Rezazadeh; J Gharesouran; A Movafagh; M Taheri; H Darvish; B Emamalizadeh; N Shahmohammadibeni; H R Khorram Khorshid; M Behmanesh; M A Sahraian; M Ohadi
Journal:  J Mol Neurosci       Date:  2015-04-01       Impact factor: 3.444

2.  Phenotypic variability in patients with fanconi-bickel syndrome with identical mutations.

Authors:  Elena Fridman; Avraham Zeharia; Tal Markus-Eidlitz; Yishai Haimi Cohen
Journal:  JIMD Rep       Date:  2014-04-10

Review 3.  Revisiting tandem repeats in psychiatric disorders from perspectives of genetics, physiology, and brain evolution.

Authors:  Xiao Xiao; Chu-Yi Zhang; Zhuohua Zhang; Zhonghua Hu; Ming Li; Tao Li
Journal:  Mol Psychiatry       Date:  2021-10-14       Impact factor: 15.992

4.  Whole genome sequencing predicts novel human disease models in rhesus macaques.

Authors:  Benjamin N Bimber; Ranjani Ramakrishnan; Rita Cervera-Juanes; Ravi Madhira; Samuel M Peterson; Robert B Norgren; Betsy Ferguson
Journal:  Genomics       Date:  2017-04-23       Impact factor: 5.736

Review 5.  RNA-binding protein misregulation in microsatellite expansion disorders.

Authors:  Marianne Goodwin; Maurice S Swanson
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

6.  Cross-species Exon Capture and Whole Exome Sequencing: Application, Utility and Challenges for Genomic Resource Development in Non-model Species.

Authors:  T Jackson; E Ishengoma; C Rhode
Journal:  Mar Biotechnol (NY)       Date:  2021-07-09       Impact factor: 3.619

7.  Emergence and evolution of Zfp36l3.

Authors:  Timothy J Gingerich; Deborah J Stumpo; Wi S Lai; Thomas A Randall; Scott J Steppan; Perry J Blackshear
Journal:  Mol Phylogenet Evol       Date:  2015-10-19       Impact factor: 4.286

Review 8.  Molecular mechanisms underlying nucleotide repeat expansion disorders.

Authors:  Indranil Malik; Chase P Kelley; Eric T Wang; Peter K Todd
Journal:  Nat Rev Mol Cell Biol       Date:  2021-06-17       Impact factor: 113.915

9.  Large-scale analysis of tandem repeat variability in the human genome.

Authors:  Jorge Duitama; Alena Zablotskaya; Rita Gemayel; An Jansen; Stefanie Belet; Joris R Vermeesch; Kevin J Verstrepen; Guy Froyen
Journal:  Nucleic Acids Res       Date:  2014-03-20       Impact factor: 16.971

10.  Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences.

Authors:  Rita Gemayel; Janice Cho; Steven Boeynaems; Kevin J Verstrepen
Journal:  Genes (Basel)       Date:  2012-07-26       Impact factor: 4.096

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