Literature DB >> 22751458

Applying next-generation sequencing to pancreatic cancer treatment.

Elaine R Mardis1.   

Abstract

Pancreatic cancer is a highly lethal malignancy that presents multiple technical challenges for genomic studies. Next-generation sequencing and its applications have proven successful in the study of other tumour types, unravelling the interplay between DNA and RNA changes that are unique to the tumour. This Review outlines the genomic studies performed to date that have explored the somatic alterations of pancreatic cancer genomes, setting the stage for the introduction of our current technological capabilities. In spite of several challenging aspects posed by pancreatic tumours in particular and clinical sequencing-based diagnostics in general, next-generation sequencing and analysis can now be used in experiments relating to the treatment of patients with this disease. As a means to improve patient outcomes, the application of comprehensive next-generation sequencing and analysis to the genomes of patients with pancreatic cancer to identify therapeutic options is proposed.

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Year:  2012        PMID: 22751458     DOI: 10.1038/nrgastro.2012.126

Source DB:  PubMed          Journal:  Nat Rev Gastroenterol Hepatol        ISSN: 1759-5045            Impact factor:   46.802


  45 in total

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Journal:  Nat Methods       Date:  2011-06-12       Impact factor: 28.547

4.  The patterns and dynamics of genomic instability in metastatic pancreatic cancer.

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Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962

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Journal:  JAMA       Date:  2011-04-20       Impact factor: 56.272

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Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

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9.  A user's guide to the encyclopedia of DNA elements (ENCODE).

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Journal:  PLoS Biol       Date:  2011-04-19       Impact factor: 8.029

10.  Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing.

Authors:  Andreas Gnirke; Alexandre Melnikov; Jared Maguire; Peter Rogov; Emily M LeProust; William Brockman; Timothy Fennell; Georgia Giannoukos; Sheila Fisher; Carsten Russ; Stacey Gabriel; David B Jaffe; Eric S Lander; Chad Nusbaum
Journal:  Nat Biotechnol       Date:  2009-02-01       Impact factor: 54.908

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  12 in total

1.  Next-generation sequencing-based multigene mutational screening for acute myeloid leukemia using MiSeq: applicability for diagnostics and disease monitoring.

Authors:  Rajyalakshmi Luthra; Keyur P Patel; Neelima G Reddy; Varan Haghshenas; Mark J Routbort; Michael A Harmon; Bedia A Barkoh; Rashmi Kanagal-Shamanna; Farhad Ravandi; Jorge E Cortes; Hagop M Kantarjian; L Jeffrey Medeiros; Rajesh R Singh
Journal:  Haematologica       Date:  2013-10-18       Impact factor: 9.941

2.  BATCAVE: calling somatic mutations with a tumor- and site-specific prior.

Authors:  Brian K Mannakee; Ryan N Gutenkunst
Journal:  NAR Genom Bioinform       Date:  2020-02-06

Review 3.  Personal genomic measurements: the opportunity for information integration.

Authors:  R B Altman
Journal:  Clin Pharmacol Ther       Date:  2013-01       Impact factor: 6.875

4.  Optimizing cancer genome sequencing and analysis.

Authors:  Malachi Griffith; Christopher A Miller; Obi L Griffith; Kilannin Krysiak; Zachary L Skidmore; Avinash Ramu; Jason R Walker; Ha X Dang; Lee Trani; David E Larson; Ryan T Demeter; Michael C Wendl; Joshua F McMichael; Rachel E Austin; Vincent Magrini; Sean D McGrath; Amy Ly; Shashikant Kulkarni; Matthew G Cordes; Catrina C Fronick; Robert S Fulton; Christopher A Maher; Li Ding; Jeffery M Klco; Elaine R Mardis; Timothy J Ley; Richard K Wilson
Journal:  Cell Syst       Date:  2015-09-23       Impact factor: 10.304

5.  Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs.

Authors:  Sang Woo Kim; Elane Fishilevich; Gustavo Arango-Argoty; Yuefeng Lin; Guodong Liu; Zhihua Li; A Paula Monaghan; Mark Nichols; Bino John
Journal:  PLoS One       Date:  2015-03-23       Impact factor: 3.240

6.  Enrichment of short mutant cell-free DNA fragments enhanced detection of pancreatic cancer.

Authors:  Xiaoyu Liu; Lingxiao Liu; Yuan Ji; Changyu Li; Tao Wei; Xuerong Yang; Yuefang Zhang; Xuyu Cai; Yangbin Gao; Weihong Xu; Shengxiang Rao; Dayong Jin; Wenhui Lou; Zilong Qiu; Xiaolin Wang
Journal:  EBioMedicine       Date:  2019-03-09       Impact factor: 8.143

7.  Whole Exome Sequencing of Rapid Autopsy Tumors and Xenograft Models Reveals Possible Driver Mutations Underlying Tumor Progression.

Authors:  Tao Xie; Monica Musteanu; Pedro P Lopez-Casas; David J Shields; Peter Olson; Paul A Rejto; Manuel Hidalgo
Journal:  PLoS One       Date:  2015-11-10       Impact factor: 3.240

Review 8.  Application of next-generation sequencing in clinical oncology to advance personalized treatment of cancer.

Authors:  Yan-Fang Guan; Gai-Rui Li; Rong-Jiao Wang; Yu-Ting Yi; Ling Yang; Dan Jiang; Xiao-Ping Zhang; Yin Peng
Journal:  Chin J Cancer       Date:  2012-09-17

Review 9.  Candidate microRNA biomarkers of pancreatic ductal adenocarcinoma: meta-analysis, experimental validation and clinical significance.

Authors:  Ming-Zhe Ma; Xiang Kong; Ming-Zhe Weng; Kun Cheng; Wei Gong; Zhi-Wei Quan; Cheng-Hong Peng
Journal:  J Exp Clin Cancer Res       Date:  2013-09-28

10.  Bioinformatory-assisted analysis of next-generation sequencing data for precision medicine in pancreatic cancer.

Authors:  Linnéa Malgerud; Johan Lindberg; Valtteri Wirta; Maria Gustafsson-Liljefors; Masoud Karimi; Carlos Fernández Moro; Katrin Stecker; Alexander Picker; Carolin Huelsewig; Martin Stein; Regina Bohnert; Marco Del Chiaro; Stephan L Haas; Rainer L Heuchel; Johan Permert; Markus J Maeurer; Stephan Brock; Caroline S Verbeke; Lars Engstrand; David B Jackson; Henrik Grönberg; Johannes Matthias Löhr
Journal:  Mol Oncol       Date:  2017-08-08       Impact factor: 6.603

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