Literature DB >> 23241835

Personal genomic measurements: the opportunity for information integration.

R B Altman1.   

Abstract

High-throughput genomic measurements initially emerged for research purposes but are now entering the clinic. The challenge for clinicians is to integrate imperfect genomic measurements with other information sources so as to estimate as closely as possible the probabilities of clinical events (diagnoses, treatment responses, prognoses). Population-based data provide a priori probabilities that can be combined with individual measurements to compute a posteriori estimates using Bayes' rule. Thus, the integration of population science with individual genomic measurements will enable the practice of personalized medicine.

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Year:  2013        PMID: 23241835      PMCID: PMC3953344          DOI: 10.1038/clpt.2012.203

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  8 in total

1.  Clinical assessment incorporating a personal genome.

Authors:  Euan A Ashley; Atul J Butte; Matthew T Wheeler; Rong Chen; Teri E Klein; Frederick E Dewey; Joel T Dudley; Kelly E Ormond; Aleksandra Pavlovic; Alexander A Morgan; Dmitry Pushkarev; Norma F Neff; Louanne Hudgins; Li Gong; Laura M Hodges; Dorit S Berlin; Caroline F Thorn; Katrin Sangkuhl; Joan M Hebert; Mark Woon; Hersh Sagreiya; Ryan Whaley; Joshua W Knowles; Michael F Chou; Joseph V Thakuria; Abraham M Rosenbaum; Alexander Wait Zaranek; George M Church; Henry T Greely; Stephen R Quake; Russ B Altman
Journal:  Lancet       Date:  2010-05-01       Impact factor: 79.321

Review 2.  A rapid-learning health system.

Authors:  Lynn M Etheredge
Journal:  Health Aff (Millwood)       Date:  2007-01-26       Impact factor: 6.301

Review 3.  Applying next-generation sequencing to pancreatic cancer treatment.

Authors:  Elaine R Mardis
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2012-07-03       Impact factor: 46.802

4.  The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies.

Authors:  Catherine A McCarty; Rex L Chisholm; Christopher G Chute; Iftikhar J Kullo; Gail P Jarvik; Eric B Larson; Rongling Li; Daniel R Masys; Marylyn D Ritchie; Dan M Roden; Jeffery P Struewing; Wendy A Wolf
Journal:  BMC Med Genomics       Date:  2011-01-26       Impact factor: 3.063

5.  Analytical validation of the Oncotype DX genomic diagnostic test for recurrence prognosis and therapeutic response prediction in node-negative, estrogen receptor-positive breast cancer.

Authors:  Maureen Cronin; Chithra Sangli; Mei-Lan Liu; Mylan Pho; Debjani Dutta; Anhthu Nguyen; Jennie Jeong; Jenny Wu; Kim Clark Langone; Drew Watson
Journal:  Clin Chem       Date:  2007-04-26       Impact factor: 8.327

6.  Personal omics profiling reveals dynamic molecular and medical phenotypes.

Authors:  Rui Chen; George I Mias; Jennifer Li-Pook-Than; Lihua Jiang; Hugo Y K Lam; Rong Chen; Elana Miriami; Konrad J Karczewski; Manoj Hariharan; Frederick E Dewey; Yong Cheng; Michael J Clark; Hogune Im; Lukas Habegger; Suganthi Balasubramanian; Maeve O'Huallachain; Joel T Dudley; Sara Hillenmeyer; Rajini Haraksingh; Donald Sharon; Ghia Euskirchen; Phil Lacroute; Keith Bettinger; Alan P Boyle; Maya Kasowski; Fabian Grubert; Scott Seki; Marco Garcia; Michelle Whirl-Carrillo; Mercedes Gallardo; Maria A Blasco; Peter L Greenberg; Phyllis Snyder; Teri E Klein; Russ B Altman; Atul J Butte; Euan A Ashley; Mark Gerstein; Kari C Nadeau; Hua Tang; Michael Snyder
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

7.  Making a definitive diagnosis: successful clinical application of whole exome sequencing in a child with intractable inflammatory bowel disease.

Authors:  Elizabeth A Worthey; Alan N Mayer; Grant D Syverson; Daniel Helbling; Benedetta B Bonacci; Brennan Decker; Jaime M Serpe; Trivikram Dasu; Michael R Tschannen; Regan L Veith; Monica J Basehore; Ulrich Broeckel; Aoy Tomita-Mitchell; Marjorie J Arca; James T Casper; David A Margolis; David P Bick; Martin J Hessner; John M Routes; James W Verbsky; Howard J Jacob; David P Dimmock
Journal:  Genet Med       Date:  2011-03       Impact factor: 8.822

8.  Phased whole-genome genetic risk in a family quartet using a major allele reference sequence.

Authors:  Frederick E Dewey; Rong Chen; Sergio P Cordero; Kelly E Ormond; Colleen Caleshu; Konrad J Karczewski; Michelle Whirl-Carrillo; Matthew T Wheeler; Joel T Dudley; Jake K Byrnes; Omar E Cornejo; Joshua W Knowles; Mark Woon; Katrin Sangkuhl; Li Gong; Caroline F Thorn; Joan M Hebert; Emidio Capriotti; Sean P David; Aleksandra Pavlovic; Anne West; Joseph V Thakuria; Madeleine P Ball; Alexander W Zaranek; Heidi L Rehm; George M Church; John S West; Carlos D Bustamante; Michael Snyder; Russ B Altman; Teri E Klein; Atul J Butte; Euan A Ashley
Journal:  PLoS Genet       Date:  2011-09-15       Impact factor: 5.917

  8 in total
  13 in total

1.  Novel multivariate methods for integration of genomics and proteomics data: applications in a kidney transplant rejection study.

Authors:  Oliver P Günther; Heesun Shin; Raymond T Ng; W Robert McMaster; Bruce M McManus; Paul A Keown; Scott J Tebbutt; Kim-Anh Lê Cao
Journal:  OMICS       Date:  2014-11

2.  The potential of translational bioinformatics approaches for pharmacology research.

Authors:  Lang Li
Journal:  Br J Clin Pharmacol       Date:  2015-06-01       Impact factor: 4.335

3.  PG4KDS: a model for the clinical implementation of pre-emptive pharmacogenetics.

Authors:  James M Hoffman; Cyrine E Haidar; Mark R Wilkinson; Kristine R Crews; Donald K Baker; Nancy M Kornegay; Wenjian Yang; Ching-Hon Pui; Ulrike M Reiss; Aditya H Gaur; Scott C Howard; William E Evans; Ulrich Broeckel; Mary V Relling
Journal:  Am J Med Genet C Semin Med Genet       Date:  2014-03-11       Impact factor: 3.908

Review 4.  Preemptive clinical pharmacogenetics implementation: current programs in five US medical centers.

Authors:  Henry M Dunnenberger; Kristine R Crews; James M Hoffman; Kelly E Caudle; Ulrich Broeckel; Scott C Howard; Robert J Hunkler; Teri E Klein; William E Evans; Mary V Relling
Journal:  Annu Rev Pharmacol Toxicol       Date:  2014-10-02       Impact factor: 13.820

5.  A graph theoretical approach to data fusion.

Authors:  Justina Žurauskienė; Paul D W Kirk; Michael P H Stumpf
Journal:  Stat Appl Genet Mol Biol       Date:  2016-04

Review 6.  Biomarkers: Delivering on the expectation of molecularly driven, quantitative health.

Authors:  Jennifer L Wilson; Russ B Altman
Journal:  Exp Biol Med (Maywood)       Date:  2017-12-03

Review 7.  Inductive and Deductive Approaches to Acute Cell Injury.

Authors:  Donald J DeGracia; Fika Tri Anggraini; Doaa Taha Metwally Taha; Zhi-Feng Huang
Journal:  Int Sch Res Notices       Date:  2014-10-13

8.  Community-level determinants of obesity: harnessing the power of electronic health records for retrospective data analysis.

Authors:  Caryn Roth; Randi E Foraker; Philip R O Payne; Peter J Embi
Journal:  BMC Med Inform Decis Mak       Date:  2014-05-08       Impact factor: 2.796

9.  OGA: an ontological tool of human phenotypes with genetic associations.

Authors:  Jesus Enrique Herrera-Galeano; David L Hirschberg; Vishwesh Mokashi; Jeffrey Solka
Journal:  BMC Res Notes       Date:  2013-12-05

10.  The MedSeq Project: a randomized trial of integrating whole genome sequencing into clinical medicine.

Authors:  Jason L Vassy; Denise M Lautenbach; Heather M McLaughlin; Sek Won Kong; Kurt D Christensen; Joel Krier; Isaac S Kohane; Lindsay Z Feuerman; Jennifer Blumenthal-Barby; J Scott Roberts; Lisa Soleymani Lehmann; Carolyn Y Ho; Peter A Ubel; Calum A MacRae; Christine E Seidman; Michael F Murray; Amy L McGuire; Heidi L Rehm; Robert C Green
Journal:  Trials       Date:  2014-03-20       Impact factor: 2.279

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