Literature DB >> 17934467

Direct selection of human genomic loci by microarray hybridization.

Thomas J Albert1, Michael N Molla, Donna M Muzny, Lynne Nazareth, David Wheeler, Xingzhi Song, Todd A Richmond, Chris M Middle, Matthew J Rodesch, Charles J Packard, George M Weinstock, Richard A Gibbs.   

Abstract

We applied high-density microarrays to the enrichment of specific sequences from the human genome for high-throughput sequencing. After capture of 6,726 approximately 500-base 'exon' segments, and of 'locus-specific' regions ranging in size from 200 kb to 5 Mb, followed by sequencing on a 454 Life Sciences FLX sequencer, most sequence reads represented selection targets. These direct selection methods supersede multiplex PCR for the large-scale analysis of genomic regions.

Entities:  

Mesh：

Substances：

Year:  2007        PMID： 17934467     DOI： 10.1038/nmeth1111

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  275 in total

Review 1.  Clinical implementation of comprehensive strategies to characterize cancer genomes: opportunities and challenges.

Authors:  Laura E MacConaill; Paul Van Hummelen; Matthew Meyerson; William C Hahn
Journal:  Cancer Discov       Date:  2011-09       Impact factor: 39.397

Review 2.  Applications of targeted gene capture and next-generation sequencing technologies in studies of human deafness and other genetic disabilities.

Authors:  Xi Lin; Wenxue Tang; Shoeb Ahmad; Jingqiao Lu; Candice C Colby; Jason Zhu; Qing Yu
Journal:  Hear Res       Date:  2012-01-14       Impact factor: 3.208

3.  A low-cost exon capture method suitable for large-scale screening of genetic deafness by the massively-parallel sequencing approach.

Authors:  Wenxue Tang; Dong Qian; Shoeb Ahmad; Douglas Mattox; N Wendell Todd; Harrison Han; Shouting Huang; Yuhua Li; Yunfeng Wang; Huawei Li; Xi Lin
Journal:  Genet Test Mol Biomarkers       Date:  2012-04-05

Review 4.  Next generation sequencing for clinical diagnostics-principles and application to targeted resequencing for hypertrophic cardiomyopathy: a paper from the 2009 William Beaumont Hospital Symposium on Molecular Pathology.

Authors:  Karl V Voelkerding; Shale Dames; Jacob D Durtschi
Journal:  J Mol Diagn       Date:  2010-09       Impact factor: 5.568

5.  Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing.

Authors:  Jamie K Teer; Lori L Bonnycastle; Peter S Chines; Nancy F Hansen; Natsuyo Aoyama; Amy J Swift; Hatice Ozel Abaan; Thomas J Albert; Elliott H Margulies; Eric D Green; Francis S Collins; James C Mullikin; Leslie G Biesecker
Journal:  Genome Res       Date:  2010-09-01       Impact factor: 9.043

Review 6.  Genetic causes of high and low serum HDL-cholesterol.

Authors:  Daphna Weissglas-Volkov; Päivi Pajukanta
Journal:  J Lipid Res       Date:  2010-04-26       Impact factor: 5.922

Review 7.  Target-enrichment strategies for next-generation sequencing.

Authors:  Lira Mamanova; Alison J Coffey; Carol E Scott; Iwanka Kozarewa; Emily H Turner; Akash Kumar; Eleanor Howard; Jay Shendure; Daniel J Turner
Journal:  Nat Methods       Date:  2010-02       Impact factor: 28.547

8.  Integrative analysis of the melanoma transcriptome.

Authors:  Michael F Berger; Joshua Z Levin; Krishna Vijayendran; Andrey Sivachenko; Xian Adiconis; Jared Maguire; Laura A Johnson; James Robinson; Roel G Verhaak; Carrie Sougnez; Robert C Onofrio; Liuda Ziaugra; Kristian Cibulskis; Elisabeth Laine; Jordi Barretina; Wendy Winckler; David E Fisher; Gad Getz; Matthew Meyerson; David B Jaffe; Stacey B Gabriel; Eric S Lander; Reinhard Dummer; Andreas Gnirke; Chad Nusbaum; Levi A Garraway
Journal:  Genome Res       Date:  2010-02-23       Impact factor: 9.043

9.  Genetic and structural variation in the gastric cancer kinome revealed through targeted deep sequencing.

Authors:  Zhi Jiang Zang; Choon Kiat Ong; Ioana Cutcutache; Willie Yu; Shen Li Zhang; Dachuan Huang; Lian Dee Ler; Karl Dykema; Anna Gan; Jiong Tao; Siyu Lim; Yujing Liu; P Andrew Futreal; Heike Grabsch; Kyle A Furge; Liang Kee Goh; Steve Rozen; Bin Tean Teh; Patrick Tan
Journal:  Cancer Res       Date:  2010-11-19       Impact factor: 12.701

10.  Photolithographic Synthesis of High-Density DNA and RNA Arrays on Flexible, Transparent, and Easily Subdivided Plastic Substrates.

Authors:  Matthew T Holden; Matthew C D Carter; Cheng-Hsien Wu; Jamison Wolfer; Eric Codner; Michael R Sussman; David M Lynn; Lloyd M Smith
Journal:  Anal Chem       Date:  2015-11-05       Impact factor: 6.986
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.