Literature DB >> 22740677

Draft genome of Streptomyces tsukubaensis NRRL 18488, the producer of the clinically important immunosuppressant tacrolimus (FK506).

Carlos Barreiro1, Carlos Prieto, Alberto Sola-Landa, Elena Solera, Miriam Martínez-Castro, Rosario Pérez-Redondo, Carlos García-Estrada, Jesús F Aparicio, Lorena T Fernández-Martínez, Javier Santos-Aberturas, Zahra Salehi-Najafabadi, Antonio Rodríguez-García, Andreas Tauch, Juan F Martín.   

Abstract

The macrocyclic polyketide tacrolimus (FK506) is a potent immunosuppressant that prevents T-cell proliferation produced solely by Streptomyces species. We report here the first draft genome sequence of a true FK506 producer, Streptomyces tsukubaensis NRRL 18488, the first tacrolimus-producing strain that was isolated and that contains the full tacrolimus biosynthesis gene cluster.

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Year:  2012        PMID： 22740677      PMCID： PMC3393489          DOI： 10.1128/JB.00692-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  NRPSsp: non-ribosomal peptide synthase substrate predictor.

Authors:  Carlos Prieto; Carlos García-Estrada; Diego Lorenzana; Juan Francisco Martín
Journal:  Bioinformatics       Date:  2011-11-29       Impact factor: 6.937

Review 2.  Engineering of regulatory cascades and networks controlling antibiotic biosynthesis in Streptomyces.

Authors:  Juan-Francisco Martín; Paloma Liras
Journal:  Curr Opin Microbiol       Date:  2010-03-19       Impact factor: 7.934

3.  Efficient pyramidal arrangement of an ordered cosmid library: Rapid screening of genes of the tacrolimus-producer Streptomyces sp. ATCC 55098.

Authors:  Miriam Martínez-Castro; Elena Solera; Juan F Martín; Carlos Barreiro
Journal:  J Microbiol Methods       Date:  2009-05-13       Impact factor: 2.363

4.  FK-506, a novel immunosuppressant isolated from a Streptomyces. I. Fermentation, isolation, and physico-chemical and biological characteristics.

Authors:  T Kino; H Hatanaka; M Hashimoto; M Nishiyama; T Goto; M Okuhara; M Kohsaka; H Aoki; H Imanaka
Journal:  J Antibiot (Tokyo)       Date:  1987-09       Impact factor: 2.649

Review 5.  Primary metabolism and its control in streptomycetes: a most unusual group of bacteria.

Authors:  D A Hodgson
Journal:  Adv Microb Physiol       Date:  2000       Impact factor: 3.517

6.  Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.

Authors:  Yasuo Ohnishi; Jun Ishikawa; Hirofumi Hara; Hirokazu Suzuki; Miwa Ikenoya; Haruo Ikeda; Atsushi Yamashita; Masahira Hattori; Sueharu Horinouchi
Journal:  J Bacteriol       Date:  2008-03-28       Impact factor: 3.490

7.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971
  7 in total
  18 in total

1.  Combining metabolomics and network analysis to improve tacrolimus production in Streptomyces tsukubaensis using different exogenous feedings.

Authors:  Cheng Wang; Jiao Liu; Huanhuan Liu; Shaoxiong Liang; Jianping Wen
Journal:  J Ind Microbiol Biotechnol       Date:  2017-08-03       Impact factor: 3.346

Review 2.  Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-12       Impact factor: 3.346

Review 3.  Nonproteinogenic amino acid building blocks for nonribosomal peptide and hybrid polyketide scaffolds.

Authors:  Christopher T Walsh; Robert V O'Brien; Chaitan Khosla
Journal:  Angew Chem Int Ed Engl       Date:  2013-05-31       Impact factor: 15.336

4.  Screening of Antibiotic Gene Clusters in Microorganisms Isolated from Wood.

Authors:  Mariana Fil; Óscar Velasco-Rodríguez; Laura García-Calvo; Alberto Sola-Landa; Carlos Barreiro
Journal:  Methods Mol Biol       Date:  2021

5.  dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome.

Authors:  Judith S Bauer; Sven Fillinger; Konrad Förstner; Alexander Herbig; Adam C Jones; Katrin Flinspach; Cynthia Sharma; Harald Gross; Kay Nieselt; Alexander K Apel
Journal:  RNA Biol       Date:  2017-07-31       Impact factor: 4.652

6.  Identifying the Biosynthetic Gene Cluster for Triacsins with an N-Hydroxytriazene Moiety.

Authors:  Frederick F Twigg; Wenlong Cai; Wei Huang; Joyce Liu; Michio Sato; Tynan J Perez; Jiaxin Geng; Moriel J Dror; Ismael Montanez; Tate L Tong; Hyunsu Lee; Wenjun Zhang
Journal:  Chembiochem       Date:  2019-03-18       Impact factor: 3.164

7.  Facile Discovery and Quantification of Isonitrile Natural Products via Tetrazine-Based Click Reactions.

Authors:  Yao-Bing Huang; Wenlong Cai; Antonio Del Rio Flores; Frederick F Twigg; Wenjun Zhang
Journal:  Anal Chem       Date:  2019-12-11       Impact factor: 6.986

8.  Characterization of Microbial Diversity in Decayed Wood from a Spanish Forest: An Environmental Source of Industrially Relevant Microorganisms.

Authors:  Óscar Velasco-Rodríguez; Mariana Fil; Tonje M B Heggeset; Kristin F Degnes; David Becerro-Recio; Katarina Kolsaková; Tone Haugen; Malene Jønsson; Macarena Toral-Martínez; Carlos García-Estrada; Alberto Sola-Landa; Kjell D Josefsen; Håvard Sletta; Carlos Barreiro
Journal:  Microorganisms       Date:  2022-06-18

9.  Annotation of the modular polyketide synthase and nonribosomal peptide synthetase gene clusters in the genome of Streptomyces tsukubaensis NRRL18488.

Authors:  Marko Blazic; Antonio Starcevic; Mohamed Lisfi; Damir Baranasic; Dusan Goranovic; Stefan Fujs; Enej Kuscer; Gregor Kosec; Hrvoje Petkovic; John Cullum; Daslav Hranueli; Jurica Zucko
Journal:  Appl Environ Microbiol       Date:  2012-09-14       Impact factor: 4.792

10.  Genome-scale metabolic network guided engineering of Streptomyces tsukubaensis for FK506 production improvement.

Authors:  Di Huang; Shanshan Li; Menglei Xia; Jianping Wen; Xiaoqiang Jia
Journal:  Microb Cell Fact       Date:  2013-05-24       Impact factor: 5.328
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