Literature DB >> 22729820

Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver.

Nobuaki Suzuki1, Hirotaka Uefuji, Takashi Nishikawa, Yukio Mukai, Atsushi Yamashita, Masahira Hattori, Naotake Ogasawara, Takeshi Bamba, Ei-ichiro Fukusaki, Akio Kobayashi, Yoshiyuki Ogata, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Yoshihisa Nakazawa.   

Abstract

Eucommia ulmoides Oliver is one of a few woody plants capable of producing abundant quantities of trans-polyisoprene rubber in their leaves, barks, and seed coats. One cDNA library each was constructed from its outer stem tissue and inner stem tissue. They comprised a total of 27,752 expressed sequence tags (ESTs) representing 10,520 unigenes made up of 4,302 contigs and 6,218 singletons. Homologues of genes coding for rubber particle membrane proteins that participate in the synthesis of high-molecular poly-isoprene in latex were isolated, as well as those encoding known major latex proteins (MLPs). MLPs extensively shared ESTs, indicating their abundant expression during trans-polyisoprene rubber biosynthesis. The six mevalonate pathway genes which are implicated in the synthesis of isopentenyl diphosphate (IPP), a starting material of poly-isoprene biosynthesis, were isolated, and their role in IPP biosynthesis was confirmed by functional complementation of suitable yeast mutants. Genes encoding five full-length trans-isoprenyl diphosphate synthases were also isolated, and two among those synthesized farnesyl diphosphate from IPP and dimethylallyl diphosphate, an assumed intermediate of rubber biosynthesis. This study should provide a valuable resource for further studies of rubber synthesis in E. ulmoides.

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Year:  2012        PMID: 22729820     DOI: 10.1007/s00425-012-1679-x

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  54 in total

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Authors:  M Rohmer
Journal:  Nat Prod Rep       Date:  1999-10       Impact factor: 13.423

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Journal:  Nature       Date:  1990-02-01       Impact factor: 49.962

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Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Contribution of mevalonate and methylerythritol phosphate pathways to polyisoprenoid biosynthesis in the rubber-producing plant Eucommia ulmoides oliver.

Authors:  Takeshi Bamba; Michiko Murayoshi; Koichirou Gyoksen; Yoshihisa Nakazawa; Hiroshi Okumoto; Hiroko Katto; Eiichiro Fukusaki; Akio Kobayashi
Journal:  Z Naturforsch C J Biosci       Date:  2010 May-Jun

5.  Cloning and characterization of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway genes of a natural-rubber producing plant, Hevea brasiliensis.

Authors:  Tomoki Sando; Shinya Takeno; Norie Watanabe; Hiroshi Okumoto; Tomohisa Kuzuyama; Atsushi Yamashita; Masahira Hattori; Naotake Ogasawara; Eiichiro Fukusaki; Akio Kobayashi
Journal:  Biosci Biotechnol Biochem       Date:  2008-11-07       Impact factor: 2.043

6.  Biosynthesis of isoprenoids (carotenoids, sterols, prenyl side-chains of chlorophylls and plastoquinone) via a novel pyruvate/glyceraldehyde 3-phosphate non-mevalonate pathway in the green alga Scenedesmus obliquus.

Authors:  J Schwender; M Seemann; H K Lichtenthaler; M Rohmer
Journal:  Biochem J       Date:  1996-05-15       Impact factor: 3.857

7.  Generation and gene ontology based analysis of expressed sequence tags (EST) from a Panax ginseng C. A. Meyer roots.

Authors:  Subramaniyam Sathiyamoorthy; Jun-Gyo In; Sathiyaraj Gayathri; Yeon-Ju Kim; Deok-Chun Yang
Journal:  Mol Biol Rep       Date:  2009-11-27       Impact factor: 2.316

8.  Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds.

Authors:  Betsy L Lytle; Jikui Song; Norberto B de la Cruz; Francis C Peterson; Kenneth A Johnson; Craig A Bingman; George N Phillips; Brian F Volkman
Journal:  Proteins       Date:  2009-07

9.  The plastidial MEP pathway: unified nomenclature and resources.

Authors:  Michael A Phillips; Patricia León; Albert Boronat; Manuel Rodríguez-Concepción
Journal:  Trends Plant Sci       Date:  2008-10-22       Impact factor: 18.313

10.  HD-zip III homeobox genes that include a novel member, ZeHB-13 (Zinnia)/ATHB-15 (Arabidopsis), are involved in procambium and xylem cell differentiation.

Authors:  Kyoko Ohashi-Ito; Hiroo Fukuda
Journal:  Plant Cell Physiol       Date:  2003-12       Impact factor: 4.927

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  10 in total

1.  Whole genome re-sequencing reveals the genetic diversity and evolutionary patterns of Eucommia ulmoides.

Authors:  Jun Qing; Yi-De Meng; Feng He; Qing-Xin Du; Jian Zhong; Hong-Yan Du; Pan-Feng Liu; Lan-Ying Du; Lu Wang
Journal:  Mol Genet Genomics       Date:  2022-02-11       Impact factor: 3.291

2.  Histochemical study of trans-polyisoprene accumulation by spectral confocal laser scanning microscopy and a specific dye showing fluorescence solvatochromism in the rubber-producing plant, Eucommia ulmoides Oliver.

Authors:  Yoshihisa Nakazawa; Tsuyoshi Takeda; Nobuaki Suzuki; Tatsushi Hayashi; Yoko Harada; Takeshi Bamba; Akio Kobayashi
Journal:  Planta       Date:  2013-06-18       Impact factor: 4.116

3.  Transcriptome analysis of terpenoid biosynthetic genes and simple sequence repeat marker screening in Eucommia ulmoides.

Authors:  Cangfu Jin; Zhouqi Li; Yu Li; Shuhui Wang; Long Li; Minhao Liu; Jing Ye
Journal:  Mol Biol Rep       Date:  2020-02-10       Impact factor: 2.316

4.  De novo sequencing of Eucommia ulmoides flower bud transcriptomes for identification of genes related to floral development.

Authors:  Huimin Liu; JianMin Fu; Hongyan Du; Jingjing Hu; Tana Wuyun
Journal:  Genom Data       Date:  2016-07-07

5.  Genome-Wide Identification of MicroRNAs and Their Targets in the Leaves and Fruits of Eucommia ulmoides Using High-Throughput Sequencing.

Authors:  Lin Wang; Hongyan Du; Ta-Na Wuyun
Journal:  Front Plant Sci       Date:  2016-11-08       Impact factor: 5.753

6.  Whole-Genome Comparison Reveals Heterogeneous Divergence and Mutation Hotspots in Chloroplast Genome of Eucommia ulmoides Oliver.

Authors:  Wencai Wang; Siyun Chen; Xianzhi Zhang
Journal:  Int J Mol Sci       Date:  2018-03-30       Impact factor: 5.923

7.  Identification of the Sex-Biased Gene Expression and Putative Sex-Associated Genes in Eucommia ulmoides Oliver Using Comparative Transcriptome Analyses.

Authors:  Wencai Wang; Xianzhi Zhang
Journal:  Molecules       Date:  2017-12-18       Impact factor: 4.411

8.  Integration of Transcriptomes, Small RNAs, and Degradome Sequencing to Identify Putative miRNAs and Their Targets Related to Eu-Rubber Biosynthesis in Eucommia ulmoides.

Authors:  Jing Ye; Wenjing Han; Ruisheng Fan; Minhao Liu; Long Li; Xiaoming Jia
Journal:  Genes (Basel)       Date:  2019-08-19       Impact factor: 4.096

9.  Structure-function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis.

Authors:  Hiroyuki Kajiura; Takuya Yoshizawa; Yuji Tokumoto; Nobuaki Suzuki; Shinya Takeno; Kanokwan Jumtee Takeno; Takuya Yamashita; Shun-Ichi Tanaka; Yoshinobu Kaneko; Kazuhito Fujiyama; Hiroyoshi Matsumura; Yoshihisa Nakazawa
Journal:  Commun Biol       Date:  2021-02-16

10.  Rapid sequence and functional diversification of a miRNA superfamily targeting calcium signaling components in seed plants.

Authors:  Komal Attri; Zijie Zhang; Atinder Singh; Robert A Sharrock; Zhixin Xie
Journal:  New Phytol       Date:  2022-05-21       Impact factor: 10.323

  10 in total

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