Literature DB >> 22729561

Atlas-based fiber reconstruction from diffusion tensor MRI data.

Sebastiano Barbieri1, Jan Klein, Miriam H A Bauer, Christopher Nimsky, Horst K Hahn.   

Abstract

PURPOSE: Develop a neural fiber reconstruction method based on diffusion tensor imaging, which is not as sensitive to user-defined regions of interest as streamline tractography.
METHODS: A simulated annealing approach is employed to find a non-rigid transformation to map a fiber bundle from a fiber atlas to another fiber bundle, which minimizes a specific energy functional. The energy functional describes how well the transformed fiber bundle fits the patient's diffusion tensor data.
RESULTS: The feasibility of the method is demonstrated on a diffusion tensor software phantom. We analyze the behavior of the algorithm with respect to image noise and number of iterations. First results on the datasets of patients are presented.
CONCLUSIONS: The described method maps fiber bundles based on diffusion tensor data and shows high robustness to image noise. Future developments of the method should help simplify inter-subject comparisons of fiber bundles.

Entities:  

Mesh:

Year:  2012        PMID: 22729561     DOI: 10.1007/s11548-012-0774-6

Source DB:  PubMed          Journal:  Int J Comput Assist Radiol Surg        ISSN: 1861-6410            Impact factor:   2.924


  16 in total

1.  Spatial transformations of diffusion tensor magnetic resonance images.

Authors:  D C Alexander; C Pierpaoli; P J Basser; J C Gee
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

2.  Segmentation of fiber tracts based on an accuracy analysis on diffusion tensor software phantoms.

Authors:  Sebastiano Barbieri; Miriam H A Bauer; Jan Klein; Christopher Nimsky; Horst K Hahn
Journal:  Neuroimage       Date:  2010-12-31       Impact factor: 6.556

3.  Log-Euclidean metrics for fast and simple calculus on diffusion tensors.

Authors:  Vincent Arsigny; Pierre Fillard; Xavier Pennec; Nicholas Ayache
Journal:  Magn Reson Med       Date:  2006-08       Impact factor: 4.668

4.  Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template.

Authors:  Susumu Mori; Kenichi Oishi; Hangyi Jiang; Li Jiang; Xin Li; Kazi Akhter; Kegang Hua; Andreia V Faria; Asif Mahmood; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa Neto; Alan Evans; Jiangyang Zhang; Hao Huang; Michael I Miller; Peter van Zijl; John Mazziotta
Journal:  Neuroimage       Date:  2008-01-03       Impact factor: 6.556

5.  A standardised evaluation of pre-surgical imaging of the corticospinal tract: where to place the seed ROI.

Authors:  Elke Hattingen; Julian Rathert; Alina Jurcoane; Stefan Weidauer; Andrea Szelényi; George Ogrezeanu; Volker Seifert; Friedhelm E Zanella; Thomas Gasser
Journal:  Neurosurg Rev       Date:  2009-05-13       Impact factor: 3.042

6.  Optimization by simulated annealing.

Authors:  S Kirkpatrick; C D Gelatt; M P Vecchi
Journal:  Science       Date:  1983-05-13       Impact factor: 47.728

7.  Structure-specific statistical mapping of white matter tracts.

Authors:  Paul A Yushkevich; Hui Zhang; Tony J Simon; James C Gee
Journal:  Neuroimage       Date:  2008-01-26       Impact factor: 6.556

8.  Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom.

Authors:  Pierre Fillard; Maxime Descoteaux; Alvina Goh; Sylvain Gouttard; Ben Jeurissen; James Malcolm; Alonso Ramirez-Manzanares; Marco Reisert; Ken Sakaie; Fatima Tensaouti; Ting Yo; Jean-François Mangin; Cyril Poupon
Journal:  Neuroimage       Date:  2011-01-20       Impact factor: 6.556

9.  Toward a quantitative assessment of diffusion anisotropy.

Authors:  C Pierpaoli; P J Basser
Journal:  Magn Reson Med       Date:  1996-12       Impact factor: 4.668

10.  A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features.

Authors:  Hui Zhang; Suyash P Awate; Sandhitsu R Das; John H Woo; Elias R Melhem; James C Gee; Paul A Yushkevich
Journal:  Med Image Comput Comput Assist Interv       Date:  2009
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