Literature DB >> 22729075

DNA circuits as amplifiers for the detection of nucleic acids on a paperfluidic platform.

Peter B Allen1, Seyed A Arshad, Bingling Li, Xi Chen, Andrew D Ellington.   

Abstract

This article describes the use of non-enzymatic nucleic acid circuits based on strand exchange reactions to detect target sequences on a paperfluidic platform. The DNA circuits that were implemented include a non-enzymatic amplifier and transduction to a fluorescent reporter; these yield an order of magnitude improvement in detection of an input nucleic acid signal. To further improve signal amplification and detection, we integrated the enzyme-free amplifier with loop-mediated isothermal amplification (LAMP). By bridging the gap between the low concentrations of LAMP amplicons and the limits of fluorescence detection, the non-enzymatic amplifier allowed us to detect as few as 1200 input templates in a paperfluidic format.

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Year:  2012        PMID: 22729075      PMCID: PMC3454488          DOI: 10.1039/c2lc40373k

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  17 in total

1.  Aptamer beacons for the direct detection of proteins.

Authors:  N Hamaguchi; A Ellington; M Stanton
Journal:  Anal Biochem       Date:  2001-07-15       Impact factor: 3.365

2.  Understanding wax printing: a simple micropatterning process for paper-based microfluidics.

Authors:  Emanuel Carrilho; Andres W Martinez; George M Whitesides
Journal:  Anal Chem       Date:  2009-08-15       Impact factor: 6.986

3.  Paper-based ELISA.

Authors:  Chao-Min Cheng; Andres W Martinez; Jinlong Gong; Charles R Mace; Scott T Phillips; Emanuel Carrilho; Katherine A Mirica; George M Whitesides
Journal:  Angew Chem Int Ed Engl       Date:  2010-06-28       Impact factor: 15.336

4.  Integrated rapid-diagnostic-test reader platform on a cellphone.

Authors:  Onur Mudanyali; Stoyan Dimitrov; Uzair Sikora; Swati Padmanabhan; Isa Navruz; Aydogan Ozcan
Journal:  Lab Chip       Date:  2012-05-17       Impact factor: 6.799

5.  Programming biomolecular self-assembly pathways.

Authors:  Peng Yin; Harry M T Choi; Colby R Calvert; Niles A Pierce
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

6.  Pressure-driven laminar flow switching for rapid exchange of solution environment around surface adhered biological particles.

Authors:  Peter B Allen; Graham Milne; Byron R Doepker; Daniel T Chiu
Journal:  Lab Chip       Date:  2010-01-04       Impact factor: 6.799

7.  Photoreactive cellulose membrane--A novel matrix for covalent immobilization of biomolecules.

Authors:  Utpal Bora; Pragya Sharma; Krishnamoorthy Kannan; Pradip Nahar
Journal:  J Biotechnol       Date:  2006-05-22       Impact factor: 3.307

8.  Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products.

Authors:  Norihiro Tomita; Yasuyoshi Mori; Hidetoshi Kanda; Tsugunori Notomi
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

9.  Loop-mediated isothermal amplification for detection of African trypanosomes.

Authors:  Noritaka Kuboki; Noboru Inoue; Tatsuya Sakurai; Francescopaolo Di Cello; Dennis J Grab; Hiroshi Suzuki; Chihiro Sugimoto; Ikuo Igarashi
Journal:  J Clin Microbiol       Date:  2003-12       Impact factor: 5.948

10.  Rapid and sensitive detection of white spot syndrome virus by loop-mediated isothermal amplification combined with a lateral flow dipstick.

Authors:  Wansadaj Jaroenram; Wansika Kiatpathomchai; Timothy W Flegel
Journal:  Mol Cell Probes       Date:  2008-12-24       Impact factor: 2.365

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  17 in total

1.  A Microsphere-Supported Lipid Bilayer Platform for DNA Reactions on a Fluid Surface.

Authors:  Aurora Fabry-Wood; Madalyn E Fetrow; Carl W Brown; Nicholas A Baker; Nadiezda Fernandez Oropeza; Andrew P Shreve; Gabriel A Montaño; Darko Stefanovic; Matthew R Lakin; Steven W Graves
Journal:  ACS Appl Mater Interfaces       Date:  2017-08-24       Impact factor: 9.229

2.  Purification of single-stranded DNA by co-polymerization with acrylamide and electrophoresis.

Authors:  Tulsi Ram Damase; Andrew D Ellington; Peter B Allen
Journal:  Biotechniques       Date:  2017-06-01       Impact factor: 1.993

3.  DNA detection using origami paper analytical devices.

Authors:  Karen Scida; Bingling Li; Andrew D Ellington; Richard M Crooks
Journal:  Anal Chem       Date:  2013-09-26       Impact factor: 6.986

4.  Chemical analog-to-digital signal conversion based on robust threshold chemistry and its evaluation in the context of microfluidics-based quantitative assays.

Authors:  Toan Huynh; Bing Sun; Liang Li; Kevin P Nichols; Jay L Koyner; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2013-09-24       Impact factor: 15.419

5.  Signal propagation in multi-layer DNAzyme cascades using structured chimeric substrates.

Authors:  Carl W Brown; Matthew R Lakin; Eli K Horwitz; M Leigh Fanning; Hannah E West; Darko Stefanovic; Steven W Graves
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-02       Impact factor: 15.336

6.  Open source and DIY hardware for DNA nanotechnology labs.

Authors:  Tulsi R Damase; Daniel Stephens; Adam Spencer; Peter B Allen
Journal:  J Biol Methods       Date:  2015

7.  High-Surety Isothermal Amplification and Detection of SARS-CoV-2.

Authors:  Sanchita Bhadra; Timothy E Riedel; Simren Lakhotia; Nicholas D Tran; Andrew D Ellington
Journal:  mSphere       Date:  2021-05-19       Impact factor: 4.389

8.  Addition of mirror-image L-DNA elements to DNA amplification circuits to distinguish leakage from target signal.

Authors:  Zackary A Zimmers; Nicholas M Adams; Frederick R Haselton
Journal:  Biosens Bioelectron       Date:  2021-05-18       Impact factor: 12.545

Review 9.  Recent advances in paper-based sensors.

Authors:  Devi D Liana; Burkhard Raguse; J Justin Gooding; Edith Chow
Journal:  Sensors (Basel)       Date:  2012-08-24       Impact factor: 3.576

10.  Design and application of cotranscriptional non-enzymatic RNA circuits and signal transducers.

Authors:  Sanchita Bhadra; Andrew D Ellington
Journal:  Nucleic Acids Res       Date:  2014-02-03       Impact factor: 16.971

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