Literature DB >> 14662933

Loop-mediated isothermal amplification for detection of African trypanosomes.

Noritaka Kuboki1, Noboru Inoue, Tatsuya Sakurai, Francescopaolo Di Cello, Dennis J Grab, Hiroshi Suzuki, Chihiro Sugimoto, Ikuo Igarashi.   

Abstract

While PCR is a method of choice for the detection of African trypanosomes in both humans and animals, the expense of this method negates its use as a diagnostic method for the detection of endemic trypanosomiasis in African countries. The loop-mediated isothermal amplification (LAMP) reaction is a method that amplifies DNA with high specificity, efficiency, and rapidity under isothermal conditions with only simple incubators. An added advantage of LAMP over PCR-based methods is that DNA amplification can be monitored spectrophotometrically and/or with the naked eye without the use of dyes. Here we report our conditions for a highly sensitive, specific, and easy diagnostic assay based on LAMP technology for the detection of parasites in the Trypanosoma brucei group (including T. brucei brucei, T. brucei gambiense, T. brucei rhodesiense, and T. evansi) and T. congolense. We show that the sensitivity of the LAMP-based method for detection of trypanosomes in vitro is up to 100 times higher than that of PCR-based methods. In vivo studies in mice infected with human-infective T. brucei gambiense further highlight the potential clinical importance of LAMP as a diagnostic tool for the identification of African trypanosomiasis.

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Year:  2003        PMID: 14662933      PMCID: PMC308967          DOI: 10.1128/JCM.41.12.5517-5524.2003

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  27 in total

1.  Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation.

Authors:  Y Mori; K Nagamine; N Tomita; T Notomi
Journal:  Biochem Biophys Res Commun       Date:  2001-11-23       Impact factor: 3.575

2.  Isothermal amplification and multimerization of DNA by Bst DNA polymerase.

Authors:  G J Hafner; I C Yang; L C Wolter; M R Stafford; P M Giffard
Journal:  Biotechniques       Date:  2001-04       Impact factor: 1.993

Review 3.  Real-time quantitative PCR in parasitology.

Authors:  Andrew S Bell; Lisa C Ranford-Cartwright
Journal:  Trends Parasitol       Date:  2002-08

4.  Preliminary evaluation of diagnostic tests using horses experimentally infected with trypanosoma evansi.

Authors:  U Wernery; R Zachariah; J A Mumford; T Luckins
Journal:  Vet J       Date:  2001-05       Impact factor: 2.688

5.  Myoglobin as a polymerase chain reaction (PCR) inhibitor: a limitation for PCR from skeletal muscle tissue avoided by the use of Thermus thermophilus polymerase.

Authors:  L Bélec; J Authier; M C Eliezer-Vanerot; C Piédouillet; A S Mohamed; R K Gherardi
Journal:  Muscle Nerve       Date:  1998-08       Impact factor: 3.217

6.  Identification and characterization of immunoglobulin G in blood as a major inhibitor of diagnostic PCR.

Authors:  W A Al-Soud; L J Jönsson; P Râdström
Journal:  J Clin Microbiol       Date:  2000-01       Impact factor: 5.948

7.  Genetic relatedness among Trypanosoma evansi stocks by random amplification of polymorphic DNA and evaluation of a synapomorphic DNA fragment for species-specific diagnosis.

Authors:  R M Ventura; G F Takeda; R A M S Silva; V L B Nunes; G A Buck; M M G Teixeira
Journal:  Int J Parasitol       Date:  2002-01       Impact factor: 3.981

8.  Comparison of different DNA preparation protocols for PCR diagnosis of Human African Trypanosomosis in Côte d'Ivoire.

Authors:  P Solano; V Jamonneau; P N'Guessan; L N'Dri; N N Dje; T W Miezan; V Lejon; P Büscher; A Garcia
Journal:  Acta Trop       Date:  2002-06       Impact factor: 3.112

9.  Simultaneous identification of Mycobacterium genus and Mycobacterium tuberculosis complex in clinical samples by 5'-exonuclease fluorogenic PCR.

Authors:  Albert García-Quintanilla; Julián González-Martín; Griselda Tudó; Mateu Espasa; María T Jiménez de Anta
Journal:  J Clin Microbiol       Date:  2002-12       Impact factor: 5.948

10.  Various applications of direct PCR using blood samples.

Authors:  Naoyuki Nishimura; Tomoko Nakayama; Hiroshi Tonoike; Kouichi Kojima; Yoshinari Shirasaki; Kensuke Kondoh; Taketo Yamada
Journal:  Clin Lab       Date:  2002       Impact factor: 1.138

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  108 in total

1.  Development of a loop-mediated isothermal amplification assay for rapid detection of subgroup J avian leukosis virus.

Authors:  Xiaotao Zhang; Ming Liao; Peirong Jiao; Kaijian Luo; Henan Zhang; Tao Ren; Guihong Zhang; Chenggang Xu; Chaoan Xin; Weisheng Cao
Journal:  J Clin Microbiol       Date:  2010-04-07       Impact factor: 5.948

2.  DNA circuits as amplifiers for the detection of nucleic acids on a paperfluidic platform.

Authors:  Peter B Allen; Seyed A Arshad; Bingling Li; Xi Chen; Andrew D Ellington
Journal:  Lab Chip       Date:  2012-06-22       Impact factor: 6.799

3.  Detection of human influenza A viruses by loop-mediated isothermal amplification.

Authors:  Leo L M Poon; Cynthia S W Leung; Kwok H Chan; Jack H C Lee; Kwok Y Yuen; Yi Guan; Joseph S M Peiris
Journal:  J Clin Microbiol       Date:  2005-01       Impact factor: 5.948

Review 4.  Molecular diagnosis of leishmaniasis: current status and future applications.

Authors:  Richard Reithinger; Jean-Claude Dujardin
Journal:  J Clin Microbiol       Date:  2006-11-08       Impact factor: 5.948

5.  Development and preliminary evaluation of a loop-mediated isothermal amplification procedure for sensitive detection of cryptosporidium oocysts in fecal and water samples.

Authors:  Panagiotis Karanis; Oriel Thekisoe; Klytaimnistra Kiouptsi; Jerry Ongerth; Ikuo Igarashi; Noborou Inoue
Journal:  Appl Environ Microbiol       Date:  2007-07-06       Impact factor: 4.792

6.  Operational feasibility of using loop-mediated isothermal amplification for diagnosis of pulmonary tuberculosis in microscopy centers of developing countries.

Authors:  Catharina C Boehme; Pamela Nabeta; German Henostroza; Rubhana Raqib; Zeaur Rahim; Martina Gerhardt; Erica Sanga; Michael Hoelscher; Tsugunori Notomi; Tetsu Hase; Mark D Perkins
Journal:  J Clin Microbiol       Date:  2007-03-28       Impact factor: 5.948

7.  Rapid diagnostic method for detection of mumps virus genome by loop-mediated isothermal amplification.

Authors:  Takao Okafuji; Naoko Yoshida; Motoko Fujino; Yoshie Motegi; Toshiaki Ihara; Yoshinori Ota; Tsugunori Notomi; Tetsuo Nakayama
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

8.  Loop-Mediated Isothermal Amplification for Detection of the 5.8S Ribosomal Ribonucleic Acid Internal Transcribed Spacer 2 Gene Found in Trypanosoma brucei gambiense.

Authors:  Olga V Nikolskaia; Oriel M M Thekisoe; J Stephen Dumler; Dennis J Grab
Journal:  Am J Trop Med Hyg       Date:  2016-06-06       Impact factor: 2.345

9.  A loop-mediated isothermal amplification (LAMP) assay for Strongyloides stercoralis in stool that uses a visual detection method with SYTO-82 fluorescent dye.

Authors:  Matthew R Watts; Gregory James; Yasmin Sultana; Andrew N Ginn; Alexander C Outhred; Fanrong Kong; Jaco J Verweij; Jonathan R Iredell; Sharon C-A Chen; Rogan Lee
Journal:  Am J Trop Med Hyg       Date:  2013-12-09       Impact factor: 2.345

10.  Feasibility and Operational Performance of Tuberculosis Detection by Loop-Mediated Isothermal Amplification Platform in Decentralized Settings: Results from a Multicenter Study.

Authors:  Christen M Gray; Achilles Katamba; Pratibha Narang; Jorge Giraldo; Carlos Zamudio; Moses Joloba; Rahul Narang; C N Paramasivan; Doris Hillemann; Pamela Nabeta; Danielle Amisano; David Alland; Frank Cobelens; Catharina C Boehme
Journal:  J Clin Microbiol       Date:  2016-05-18       Impact factor: 5.948

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