Literature DB >> 22725973

Role of hydrophobic hydration in protein stability: a 3D water-explicit protein model exhibiting cold and heat denaturation.

Silvina Matysiak1, Pablo G Debenedetti, Peter J Rossky.   

Abstract

We investigate the microscopic mechanism of cold and heat denaturation using a 3D lattice model of a hydrated protein in which water is represented explicitly. The water model, which incorporates directional bonding and tetrahedral geometry, captures many aspects of water thermodynamics and properly describes hydrophobic hydration around apolar solutes because the hydrogen bonding rules in the model were gleaned from off-lattice atomistic simulations of water around representative protein structures. By incorporating local chain stiffness in the protein model, a homopolymer can fold into a β-hairpin. It is shown that the homopolymer can be folded by either attractive interactions between the monomers or as a direct consequence of the entropic cost of forming interfacial hydrogen bonds in the solvent. However, cold denaturation is not observed if the collapse transition is induced by intramolecular attractions. We further find that it is the changes in hydrophobic hydration with decreasing temperature that drive cold unfolding and that the overall process is enthalpically driven, whereas heat denaturation is entropically driven.

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Year:  2012        PMID: 22725973     DOI: 10.1021/jp3039175

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Temperature-dependent solvation modulates the dimensions of disordered proteins.

Authors:  René Wuttke; Hagen Hofmann; Daniel Nettels; Madeleine B Borgia; Jeetain Mittal; Robert B Best; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-21       Impact factor: 11.205

2.  The hydrophobic effect, and fluctuations: The long and the short of it.

Authors:  Erte Xi; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-14       Impact factor: 11.205

3.  Computational investigation of cold denaturation in the Trp-cage miniprotein.

Authors:  Sang Beom Kim; Jeremy C Palmer; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-25       Impact factor: 11.205

4.  Temperature Regulates Stability, Ligand Binding (Mg2+ and ATP), and Stoichiometry of GroEL-GroES Complexes.

Authors:  Thomas E Walker; Mehdi Shirzadeh; He Mirabel Sun; Jacob W McCabe; Andrew Roth; Zahra Moghadamchargari; David E Clemmer; Arthur Laganowsky; Hays Rye; David H Russell
Journal:  J Am Chem Soc       Date:  2022-02-02       Impact factor: 15.419

5.  From Protein Design to the Energy Landscape of a Cold Unfolding Protein.

Authors:  Surya V S R K Pulavarti; Jack B Maguire; Shirley Yuen; Joseph S Harrison; Jermel Griffin; Lakshmanane Premkumar; Edward A Esposito; George I Makhatadze; Angel E Garcia; Thomas M Weiss; Edward H Snell; Brian Kuhlman; Thomas Szyperski
Journal:  J Phys Chem B       Date:  2022-02-07       Impact factor: 3.466

6.  Cold Denaturation of Proteins in the Absence of Solvent: Implications for Protein Storage.

Authors:  Emma L Norgate; Rosie Upton; Kjetil Hansen; Bruno Bellina; C Brookes; Argyris Politis; Perdita E Barran
Journal:  Angew Chem Int Ed Engl       Date:  2022-04-21       Impact factor: 16.823

  6 in total

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