Literature DB >> 22719523

3-Benzyl-7-(2,4-dichloro-phen-yl)-4H-1,3,4-thia-diazolo[2,3-c][1,2,4]triazin-4-one.

Hoong-Kun Fun, Suhana Arshad, B K Sarojini, U A Imran, B G Krishna.   

Abstract

In the title compound, C(17)H(10)Cl(2)N(4)OS, the phenyl ring and the H atoms attached to the adjacent C atom are disordered over two positions, with refined site occupancies of 0.509 (8) and 0.491 (8). The planar 4H-1,3,4-thia-diazolo[2,3-c][1,2,4]triazine ring system [maximum deviation = 0.048 (3) Å] forms dihedral angles of 76.9 (5), 74.9 (5) and 9.88 (12)°, respectively, with the major and minor parts of the disordered phenyl ring and with the dichloro-substituted benzene ring. In the crystal, pairs of C-H⋯O hydrogen bonds link the mol-ecules, forming inversion dimers with an R(2) (2)(18) graph-set motif. A short S⋯N contact of 2.801 (3) Å is observed between the dimers.

Entities:  

Year:  2012        PMID: 22719523      PMCID: PMC3379325          DOI: 10.1107/S1600536812021253

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of thia­diazole derivatives, see: Kurtzer (1965 ▶); Sandstrom (1968 ▶); Eue & Tietz (1970 ▶); Holla et al. (1988 ▶, 1998 ▶). For a related structure, see: Zhang et al. (2011 ▶); Fun et al. (2011 ▶); Ma & Yang (2008 ▶); Yu et al. (2007 ▶); Jia et al. (2011 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H10Cl2N4OS M = 389.25 Triclinic, a = 4.4961 (1) Å b = 13.4412 (5) Å c = 14.4588 (5) Å α = 70.620 (2)° β = 85.956 (2)° γ = 83.063 (2)° V = 817.81 (5) Å3 Z = 2 Mo Kα radiation μ = 0.54 mm−1 T = 100 K 0.21 × 0.10 × 0.09 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.894, T max = 0.955 8906 measured reflections 4086 independent reflections 2479 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.129 S = 1.04 4086 reflections 281 parameters 180 restraints H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021253/is5127sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021253/is5127Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021253/is5127Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H10Cl2N4OSZ = 2
Mr = 389.25F(000) = 396
Triclinic, P1Dx = 1.581 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.4961 (1) ÅCell parameters from 5482 reflections
b = 13.4412 (5) Åθ = 2.5–31.5°
c = 14.4588 (5) ŵ = 0.54 mm1
α = 70.620 (2)°T = 100 K
β = 85.956 (2)°Block, yellow
γ = 83.063 (2)°0.21 × 0.10 × 0.09 mm
V = 817.81 (5) Å3
Bruker SMART APEXII CCD area-detector diffractometer4086 independent reflections
Radiation source: fine-focus sealed tube2479 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.053
φ and ω scansθmax = 28.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −6→6
Tmin = 0.894, Tmax = 0.955k = −18→18
8906 measured reflectionsl = −18→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0449P)2 + 0.2058P] where P = (Fo2 + 2Fc2)/3
4086 reflections(Δ/σ)max = 0.001
281 parametersΔρmax = 0.42 e Å3
180 restraintsΔρmin = −0.38 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl1−0.1885 (2)1.03193 (7)1.30609 (7)0.0514 (3)
Cl2−0.2647 (2)0.66171 (7)1.25574 (6)0.0410 (3)
S10.00839 (17)0.62886 (7)1.07446 (5)0.0301 (2)
O10.7716 (5)0.79090 (18)0.84041 (16)0.0380 (6)
N10.3542 (6)0.7790 (2)0.99367 (18)0.0301 (6)
N20.3951 (5)0.7091 (2)0.94181 (18)0.0284 (6)
N30.2316 (5)0.5525 (2)0.92944 (17)0.0321 (7)
N40.4208 (5)0.5638 (2)0.84780 (18)0.0330 (7)
C10.1722 (7)0.9123 (3)1.1014 (2)0.0338 (8)
H1A0.30000.93391.04470.041*
C20.0985 (8)0.9801 (3)1.1546 (2)0.0376 (8)
H2A0.17441.04731.13510.045*
C3−0.0885 (7)0.9488 (3)1.2373 (2)0.0360 (8)
C4−0.1976 (7)0.8511 (3)1.2661 (2)0.0354 (8)
H4A−0.32510.83011.32300.043*
C5−0.1205 (7)0.7840 (3)1.2119 (2)0.0296 (7)
C60.0653 (7)0.8122 (3)1.1278 (2)0.0292 (7)
C70.1560 (7)0.7466 (3)1.0647 (2)0.0281 (7)
C80.2259 (7)0.6250 (3)0.9714 (2)0.0294 (7)
C90.6039 (7)0.7215 (3)0.8630 (2)0.0309 (8)
C100.5922 (7)0.6403 (3)0.8173 (2)0.0313 (8)
C110.7890 (7)0.6472 (3)0.7261 (2)0.0371 (9)
H11A0.92160.58010.73740.045*0.509 (8)
H11B0.91760.70530.71400.045*0.509 (8)
H11C0.94660.69440.72100.045*0.491 (8)
H11D0.88810.57590.73050.045*0.491 (8)
C120.600 (6)0.6676 (16)0.6331 (18)0.020 (3)0.509 (8)
C130.4824 (18)0.7651 (7)0.5769 (5)0.0307 (18)0.509 (8)
H13A0.52460.82660.58990.037*0.509 (8)
C140.302 (4)0.7744 (17)0.5012 (10)0.044 (3)0.509 (8)
H14A0.21460.84230.46310.053*0.509 (8)
C150.248 (3)0.6858 (12)0.4802 (8)0.049 (3)0.509 (8)
H15A0.12660.69270.42680.059*0.509 (8)
C160.3718 (17)0.5854 (7)0.5380 (5)0.042 (2)0.509 (8)
H16A0.33640.52390.52370.051*0.509 (8)
C170.546 (2)0.5769 (7)0.6159 (7)0.034 (2)0.509 (8)
H17A0.62670.50930.65690.041*0.509 (8)
C12X0.611 (7)0.6874 (18)0.6421 (19)0.023 (3)0.491 (8)
C13X0.5639 (18)0.7976 (7)0.5985 (6)0.0300 (18)0.491 (8)
H13B0.65600.84150.62530.036*0.491 (8)
C14X0.3859 (17)0.8449 (7)0.5171 (5)0.041 (2)0.491 (8)
H14B0.35320.91990.48980.050*0.491 (8)
C15X0.256 (4)0.7806 (18)0.4761 (10)0.042 (3)0.491 (8)
H15B0.13430.81270.42080.050*0.491 (8)
C16X0.302 (3)0.6708 (13)0.5142 (7)0.041 (2)0.491 (8)
H16B0.21200.62770.48610.049*0.491 (8)
C17X0.483 (2)0.6257 (8)0.5948 (7)0.033 (2)0.491 (8)
H17B0.52380.55070.61930.040*0.491 (8)
U11U22U33U12U13U23
Cl10.0638 (7)0.0300 (5)0.0509 (6)0.0054 (5)0.0255 (5)−0.0094 (4)
Cl20.0471 (5)0.0458 (6)0.0308 (5)−0.0175 (4)0.0167 (4)−0.0126 (4)
S10.0230 (4)0.0477 (5)0.0195 (4)−0.0078 (4)0.0029 (3)−0.0101 (4)
O10.0324 (13)0.0363 (14)0.0368 (13)−0.0029 (11)0.0121 (10)−0.0035 (11)
N10.0250 (14)0.0336 (16)0.0261 (14)0.0025 (12)0.0024 (11)−0.0049 (12)
N20.0209 (13)0.0383 (16)0.0228 (13)0.0010 (12)0.0022 (11)−0.0076 (12)
N30.0220 (14)0.059 (2)0.0178 (13)−0.0098 (14)0.0029 (10)−0.0146 (13)
N40.0189 (13)0.065 (2)0.0189 (13)−0.0113 (14)0.0041 (10)−0.0174 (13)
C10.0279 (18)0.0290 (19)0.0327 (18)0.0058 (15)0.0077 (14)0.0008 (15)
C20.038 (2)0.0248 (18)0.0365 (19)0.0046 (16)0.0101 (16)0.0027 (15)
C30.0323 (19)0.0298 (19)0.038 (2)0.0105 (15)0.0043 (15)−0.0056 (15)
C40.0338 (19)0.034 (2)0.0289 (18)0.0028 (16)0.0108 (14)−0.0020 (15)
C50.0270 (17)0.0313 (18)0.0253 (16)−0.0021 (15)0.0027 (13)−0.0031 (14)
C60.0231 (17)0.0342 (19)0.0235 (16)0.0048 (14)0.0010 (13)−0.0036 (14)
C70.0210 (16)0.0343 (19)0.0219 (16)0.0001 (14)−0.0002 (12)−0.0007 (13)
C80.0194 (16)0.050 (2)0.0169 (15)−0.0035 (15)−0.0006 (12)−0.0079 (14)
C90.0232 (17)0.040 (2)0.0215 (16)0.0038 (16)0.0003 (13)−0.0014 (14)
C100.0175 (15)0.054 (2)0.0195 (15)−0.0005 (16)−0.0001 (12)−0.0087 (15)
C110.0227 (17)0.064 (3)0.0236 (17)−0.0066 (17)0.0083 (13)−0.0135 (17)
C120.019 (5)0.034 (7)0.011 (4)0.005 (5)0.002 (3)−0.013 (4)
C130.038 (4)0.035 (4)0.018 (3)0.000 (3)0.008 (3)−0.010 (3)
C140.033 (6)0.064 (5)0.020 (6)0.013 (5)−0.002 (4)0.000 (6)
C150.033 (5)0.080 (7)0.025 (5)−0.002 (5)−0.005 (4)−0.007 (5)
C160.048 (4)0.058 (5)0.029 (4)−0.012 (4)0.013 (3)−0.027 (4)
C170.041 (5)0.035 (5)0.024 (4)−0.004 (4)0.007 (3)−0.006 (4)
C12X0.019 (4)0.035 (7)0.016 (6)−0.008 (5)0.008 (4)−0.011 (4)
C13X0.028 (4)0.036 (4)0.022 (4)0.003 (3)0.006 (3)−0.008 (3)
C14X0.039 (4)0.051 (5)0.022 (3)0.005 (4)0.009 (3)0.000 (3)
C15X0.019 (5)0.083 (7)0.014 (6)0.009 (5)0.001 (4)−0.010 (6)
C16X0.024 (5)0.074 (6)0.023 (5)−0.004 (5)0.003 (4)−0.015 (5)
C17X0.039 (5)0.042 (5)0.019 (4)−0.005 (4)0.011 (3)−0.012 (4)
Cl1—C31.730 (4)C11—H11A0.9900
Cl2—C51.741 (3)C11—H11B0.9900
S1—C81.736 (3)C11—H11C0.9900
S1—C71.749 (3)C11—H11D0.9900
O1—C91.216 (4)C12—C131.36 (2)
N1—C71.306 (4)C12—C171.375 (18)
N1—N21.373 (4)C13—C141.370 (14)
N2—C81.371 (4)C13—H13A0.9500
N2—C91.403 (4)C14—C151.37 (3)
N3—C81.305 (4)C14—H14A0.9500
N3—N41.382 (3)C15—C161.402 (16)
N4—C101.299 (4)C15—H15A0.9500
C1—C21.374 (5)C16—C171.382 (12)
C1—C61.406 (4)C16—H16A0.9500
C1—H1A0.9500C17—H17A0.9500
C2—C31.387 (4)C12X—C13X1.40 (2)
C2—H2A0.9500C12X—C17X1.425 (19)
C3—C41.379 (5)C13X—C14X1.395 (10)
C4—C51.380 (4)C13X—H13B0.9500
C4—H4A0.9500C14X—C15X1.40 (2)
C5—C61.395 (4)C14X—H14B0.9500
C6—C71.474 (4)C15X—C16X1.39 (3)
C9—C101.458 (5)C15X—H15B0.9500
C10—C111.518 (4)C16X—C17X1.391 (14)
C11—C12X1.42 (3)C16X—H16B0.9500
C11—C121.57 (2)C17X—H17B0.9500
C8—S1—C788.09 (16)H11A—C11—H11B107.9
C7—N1—N2109.0 (3)C12X—C11—H11C109.8
C8—N2—N1117.1 (2)C10—C11—H11C109.8
C8—N2—C9121.1 (3)C12X—C11—H11D109.8
N1—N2—C9121.9 (3)C10—C11—H11D109.8
C8—N3—N4116.4 (3)H11C—C11—H11D108.2
C10—N4—N3121.4 (3)C13—C12—C17121.7 (16)
C2—C1—C6122.4 (3)C13—C12—C11124.0 (12)
C2—C1—H1A118.8C17—C12—C11114.2 (16)
C6—C1—H1A118.8C12—C13—C14119.8 (13)
C1—C2—C3118.8 (3)C12—C13—H13A120.1
C1—C2—H2A120.6C14—C13—H13A120.1
C3—C2—H2A120.6C13—C14—C15120.3 (15)
C4—C3—C2120.7 (3)C13—C14—H14A119.9
C4—C3—Cl1118.9 (3)C15—C14—H14A119.9
C2—C3—Cl1120.4 (3)C14—C15—C16119.7 (10)
C3—C4—C5119.6 (3)C14—C15—H15A120.1
C3—C4—H4A120.2C16—C15—H15A120.1
C5—C4—H4A120.2C17—C16—C15119.4 (9)
C4—C5—C6121.8 (3)C17—C16—H16A120.3
C4—C5—Cl2115.9 (2)C15—C16—H16A120.3
C6—C5—Cl2122.2 (3)C12—C17—C16119.1 (12)
C5—C6—C1116.6 (3)C12—C17—H17A120.5
C5—C6—C7125.7 (3)C16—C17—H17A120.5
C1—C6—C7117.7 (3)C13X—C12X—C11117.8 (13)
N1—C7—C6118.7 (3)C13X—C12X—C17X116.3 (19)
N1—C7—S1116.4 (2)C11—C12X—C17X125.9 (17)
C6—C7—S1124.9 (2)C14X—C13X—C12X122.0 (12)
N3—C8—N2125.2 (3)C14X—C13X—H13B119.0
N3—C8—S1125.4 (2)C12X—C13X—H13B119.0
N2—C8—S1109.4 (2)C13X—C14X—C15X119.1 (10)
O1—C9—N2121.9 (3)C13X—C14X—H14B120.4
O1—C9—C10127.1 (3)C15X—C14X—H14B120.4
N2—C9—C10111.0 (3)C16X—C15X—C14X121.5 (11)
N4—C10—C9124.8 (3)C16X—C15X—H15B119.3
N4—C10—C11117.6 (3)C14X—C15X—H15B119.3
C9—C10—C11117.6 (3)C15X—C16X—C17X118.2 (13)
C12X—C11—C10109.5 (13)C15X—C16X—H16B120.9
C10—C11—C12112.3 (11)C17X—C16X—H16B120.9
C10—C11—H11A109.2C16X—C17X—C12X122.7 (14)
C12—C11—H11A109.2C16X—C17X—H17B118.7
C10—C11—H11B109.2C12X—C17X—H17B118.7
C12—C11—H11B109.2
C7—N1—N2—C81.3 (4)N1—N2—C9—O14.5 (5)
C7—N1—N2—C9−177.7 (3)C8—N2—C9—C104.1 (4)
C8—N3—N4—C102.7 (4)N1—N2—C9—C10−177.0 (3)
C6—C1—C2—C3−0.1 (5)N3—N4—C10—C9−0.7 (5)
C1—C2—C3—C40.4 (5)N3—N4—C10—C11−179.1 (3)
C1—C2—C3—Cl1−179.7 (3)O1—C9—C10—N4175.7 (3)
C2—C3—C4—C5−0.2 (5)N2—C9—C10—N4−2.7 (4)
Cl1—C3—C4—C5179.8 (3)O1—C9—C10—C11−5.8 (5)
C3—C4—C5—C6−0.2 (5)N2—C9—C10—C11175.7 (3)
C3—C4—C5—Cl2178.9 (2)N4—C10—C11—C12X75.2 (9)
C4—C5—C6—C10.4 (5)C9—C10—C11—C12X−103.4 (9)
Cl2—C5—C6—C1−178.6 (2)N4—C10—C11—C1262.9 (9)
C4—C5—C6—C7−179.1 (3)C9—C10—C11—C12−115.7 (8)
Cl2—C5—C6—C71.9 (5)C10—C11—C12—C1384 (2)
C2—C1—C6—C5−0.3 (5)C10—C11—C12—C17−92.4 (19)
C2—C1—C6—C7179.3 (3)C17—C12—C13—C140 (3)
N2—N1—C7—C6−177.3 (3)C11—C12—C13—C14−175.2 (18)
N2—N1—C7—S10.6 (3)C12—C13—C14—C15−2 (3)
C5—C6—C7—N1−173.5 (3)C13—C14—C15—C161 (3)
C1—C6—C7—N17.0 (4)C14—C15—C16—C170.4 (19)
C5—C6—C7—S18.8 (5)C13—C12—C17—C161 (3)
C1—C6—C7—S1−170.7 (2)C11—C12—C17—C16177.5 (13)
C8—S1—C7—N1−1.7 (3)C15—C16—C17—C12−1.9 (19)
C8—S1—C7—C6176.0 (3)C10—C11—C12X—C13X87 (2)
N4—N3—C8—N2−1.2 (5)C10—C11—C12X—C17X−95 (2)
N4—N3—C8—S1−180.0 (2)C11—C12X—C13X—C14X−178.3 (14)
N1—N2—C8—N3178.5 (3)C17X—C12X—C13X—C14X4 (3)
C9—N2—C8—N3−2.5 (5)C12X—C13X—C14X—C15X−1.6 (19)
N1—N2—C8—S1−2.5 (3)C13X—C14X—C15X—C16X0 (2)
C9—N2—C8—S1176.5 (2)C14X—C15X—C16X—C17X0 (2)
C7—S1—C8—N3−178.9 (3)C15X—C16X—C17X—C12X3 (2)
C7—S1—C8—N22.2 (2)C13X—C12X—C17X—C16X−5 (3)
C8—N2—C9—O1−174.4 (3)C11—C12X—C17X—C16X177.7 (18)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O1i0.952.363.226 (5)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O1i0.952.363.226 (5)151

Symmetry code: (i) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Recent advances in the chemistry of 1,3,4-thiadiazoles.

Authors:  J Sandström
Journal:  Adv Heterocycl Chem       Date:  1968       Impact factor: 3.552

3.  Diaqua-bis(2,5-di-4-pyridyl-1,3,4-thia-diazole-κN)bis-(thio-cyanato-κN)copper(II) dihydrate.

Authors:  Wei-Wu Ma; Ming-Hua Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-10

4.  Synthesis of some new biologically active thiadiazolotriazinones.

Authors:  B S Holla; B K Sarojini; R Gonsalves
Journal:  Farmaco       Date:  1998-06-30

5.  2-Methyl-5-[(3-methyl-4-nitro-benz-yl)sulfan-yl]-1,3,4-thia-diazole.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; B Chandrakantha; Arun M Isloor; Prakash Shetty
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

6.  3-Methyl-6-trichloro-methyl-1,2,4-triazolo[3,4-b][1,3,4]thia-diazole.

Authors:  Wei-Min Jia; Zhi-Jian Wang; Xiao-Yu Jia; Jing-Jing Zhang; Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

7.  5-(4-Bromo-2-nitro-phen-yl)-1,3,4-thia-diazol-2-amine.

Authors:  Jian-Qiang Zhang; Qiu He; Qianghua Jiang; Haipin Mu; Rong Wan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-06

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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