| Literature DB >> 21202184 |
Abstract
In the title compound, [Cu(NCS)(2)(C(12)H(8)N(4)S)(2)(H(2)O)(2)]·2H(2)O, the Cu atom is located on an inversion center and displays an octa-hedral geometry. Two N atoms of two different 2,5-di-4-pyridyl-1,3,4-thia-diazole ligands and two N atoms from two separate thio-cyanate mol-ecules form the equatorial plane, while two coordinated water mol-ecules are in axial positions. The crystal structure is consolidated by extensive hydrogen bonding, forming a two-dimensional network.Entities:
Year: 2008 PMID: 21202184 PMCID: PMC2961085 DOI: 10.1107/S1600536808008854
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(NCS)2(C12H8N4S)2(H2O)2]·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2692 reflections | |
| θ = 1.4–25.1º | |
| µ = 1.03 mm−1 | |
| α = 104.629 (2)º | |
| β = 93.067 (2)º | Block, blue |
| γ = 112.228 (2)º | 0.28 × 0.24 × 0.19 mm |
| Bruker APEXII area-detector diffractometer | 2692 independent reflections |
| Radiation source: fine-focus sealed tube | 1794 reflections with |
| Monochromator: graphite | |
| θmax = 25.1º | |
| φ and ω scans | θmin = 1.4º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 2004) | |
| 3905 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2692 reflections | Δρmax = 0.44 e Å−3 |
| 205 parameters | Δρmin = −0.69 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.5000 | 1.0000 | 0.0000 | 0.0423 (3) | |
| S1 | −0.0367 (2) | 0.7797 (2) | 0.40422 (10) | 0.0484 (4) | |
| S2 | 0.7893 (2) | 0.5558 (2) | −0.03644 (12) | 0.0477 (4) | |
| N1 | 0.6831 (7) | 0.8539 (6) | −0.0062 (3) | 0.0417 (11) | |
| N2 | 0.4011 (6) | 0.9385 (6) | 0.1283 (3) | 0.0349 (10) | |
| N3 | 0.3261 (7) | 0.7924 (7) | 0.4413 (3) | 0.0486 (13) | |
| N4 | 0.2304 (8) | 0.7563 (7) | 0.5165 (3) | 0.0489 (13) | |
| N5 | −0.3536 (8) | 0.6276 (7) | 0.7101 (3) | 0.0511 (13) | |
| O1 | 0.2491 (5) | 0.7683 (5) | −0.0897 (3) | 0.0434 (9) | |
| H1B | 0.1349 | 0.7366 | −0.0728 | 0.065* | |
| H1C | 0.2596 | 0.6773 | −0.1223 | 0.065* | |
| O2 | −0.6718 (6) | 0.4775 (6) | 0.8112 (3) | 0.0586 (12) | |
| H2B | −0.5687 | 0.5204 | 0.7880 | 0.088* | |
| H2C | −0.6415 | 0.4525 | 0.8582 | 0.088* | |
| C1 | 0.7271 (8) | 0.7310 (8) | −0.0188 (4) | 0.0347 (12) | |
| C2 | 0.2117 (9) | 0.9123 (8) | 0.1465 (4) | 0.0436 (14) | |
| H2 | 0.1223 | 0.9275 | 0.1043 | 0.052* | |
| C3 | 0.1394 (9) | 0.8639 (8) | 0.2240 (4) | 0.0455 (14) | |
| H3 | 0.0025 | 0.8407 | 0.2316 | 0.055* | |
| C4 | 0.2713 (8) | 0.8505 (7) | 0.2895 (4) | 0.0379 (13) | |
| C5 | 0.4715 (9) | 0.8795 (8) | 0.2725 (4) | 0.0475 (15) | |
| H5 | 0.5660 | 0.8706 | 0.3150 | 0.057* | |
| C6 | 0.5266 (9) | 0.9218 (8) | 0.1915 (4) | 0.0432 (14) | |
| H6 | 0.6604 | 0.9397 | 0.1802 | 0.052* | |
| C7 | 0.2060 (8) | 0.8066 (7) | 0.3769 (4) | 0.0395 (13) | |
| C8 | 0.0424 (9) | 0.7481 (8) | 0.5080 (4) | 0.0418 (13) | |
| C9 | −0.0929 (8) | 0.7148 (7) | 0.5800 (4) | 0.0379 (13) | |
| C10 | −0.2927 (9) | 0.7063 (8) | 0.5682 (4) | 0.0442 (14) | |
| H10 | −0.3440 | 0.7292 | 0.5160 | 0.053* | |
| C11 | −0.4144 (9) | 0.6632 (8) | 0.6357 (4) | 0.0495 (15) | |
| H11 | −0.5479 | 0.6593 | 0.6276 | 0.059* | |
| C12 | −0.1584 (10) | 0.6393 (9) | 0.7221 (4) | 0.0559 (17) | |
| H12 | −0.1112 | 0.6178 | 0.7757 | 0.067* | |
| C13 | −0.0248 (9) | 0.6813 (8) | 0.6596 (4) | 0.0497 (15) | |
| H13 | 0.1090 | 0.6871 | 0.6705 | 0.060* |
| Cu1 | 0.0421 (6) | 0.0432 (6) | 0.0477 (6) | 0.0197 (5) | 0.0129 (4) | 0.0186 (5) |
| S1 | 0.0490 (9) | 0.0680 (11) | 0.0412 (9) | 0.0289 (8) | 0.0147 (7) | 0.0281 (8) |
| S2 | 0.0484 (9) | 0.0420 (9) | 0.0663 (11) | 0.0258 (7) | 0.0192 (8) | 0.0252 (8) |
| N1 | 0.044 (3) | 0.043 (3) | 0.052 (3) | 0.026 (2) | 0.015 (2) | 0.020 (2) |
| N2 | 0.032 (2) | 0.037 (3) | 0.038 (3) | 0.014 (2) | 0.009 (2) | 0.015 (2) |
| N3 | 0.045 (3) | 0.063 (3) | 0.043 (3) | 0.022 (3) | 0.012 (2) | 0.023 (3) |
| N4 | 0.048 (3) | 0.064 (3) | 0.041 (3) | 0.021 (3) | 0.014 (2) | 0.027 (3) |
| N5 | 0.050 (3) | 0.064 (4) | 0.044 (3) | 0.022 (3) | 0.017 (2) | 0.022 (3) |
| O1 | 0.035 (2) | 0.043 (2) | 0.051 (2) | 0.0140 (17) | 0.0117 (17) | 0.0118 (18) |
| O2 | 0.055 (3) | 0.059 (3) | 0.051 (3) | 0.013 (2) | 0.018 (2) | 0.011 (2) |
| C1 | 0.031 (3) | 0.045 (3) | 0.031 (3) | 0.014 (2) | 0.011 (2) | 0.016 (3) |
| C2 | 0.041 (3) | 0.052 (4) | 0.043 (3) | 0.018 (3) | 0.007 (3) | 0.023 (3) |
| C3 | 0.035 (3) | 0.056 (4) | 0.046 (3) | 0.013 (3) | 0.009 (3) | 0.022 (3) |
| C4 | 0.040 (3) | 0.034 (3) | 0.036 (3) | 0.011 (2) | 0.012 (2) | 0.009 (2) |
| C5 | 0.042 (3) | 0.064 (4) | 0.045 (4) | 0.026 (3) | 0.009 (3) | 0.025 (3) |
| C6 | 0.040 (3) | 0.054 (4) | 0.043 (3) | 0.022 (3) | 0.017 (3) | 0.020 (3) |
| C7 | 0.042 (3) | 0.039 (3) | 0.036 (3) | 0.014 (3) | 0.009 (3) | 0.012 (3) |
| C8 | 0.047 (3) | 0.043 (3) | 0.037 (3) | 0.017 (3) | 0.006 (3) | 0.014 (3) |
| C9 | 0.043 (3) | 0.035 (3) | 0.036 (3) | 0.015 (2) | 0.008 (2) | 0.012 (3) |
| C10 | 0.046 (3) | 0.053 (4) | 0.047 (3) | 0.026 (3) | 0.009 (3) | 0.026 (3) |
| C11 | 0.041 (3) | 0.052 (4) | 0.058 (4) | 0.020 (3) | 0.012 (3) | 0.017 (3) |
| C12 | 0.054 (4) | 0.075 (5) | 0.042 (4) | 0.023 (3) | 0.014 (3) | 0.026 (3) |
| C13 | 0.043 (3) | 0.066 (4) | 0.043 (4) | 0.022 (3) | 0.007 (3) | 0.023 (3) |
| Cu1—N1 | 2.071 (4) | O2—H2C | 0.8159 |
| Cu1—N1i | 2.071 (4) | C2—C3 | 1.372 (8) |
| Cu1—O1i | 2.118 (4) | C2—H2 | 0.9300 |
| Cu1—O1 | 2.118 (4) | C3—C4 | 1.365 (8) |
| Cu1—N2 | 2.178 (4) | C3—H3 | 0.9300 |
| Cu1—N2i | 2.178 (4) | C4—C5 | 1.388 (8) |
| S1—C7 | 1.725 (6) | C4—C7 | 1.485 (7) |
| S1—C8 | 1.726 (5) | C5—C6 | 1.372 (7) |
| S2—C1 | 1.638 (6) | C5—H5 | 0.9300 |
| N1—C1 | 1.150 (7) | C6—H6 | 0.9300 |
| N2—C6 | 1.324 (7) | C8—C9 | 1.479 (7) |
| N2—C2 | 1.325 (7) | C9—C13 | 1.382 (7) |
| N3—C7 | 1.301 (7) | C9—C10 | 1.384 (7) |
| N3—N4 | 1.375 (6) | C10—C11 | 1.382 (8) |
| N4—C8 | 1.300 (7) | C10—H10 | 0.9300 |
| N5—C11 | 1.305 (7) | C11—H11 | 0.9300 |
| N5—C12 | 1.342 (8) | C12—C13 | 1.372 (8) |
| O1—H1B | 0.8214 | C12—H12 | 0.9300 |
| O1—H1C | 0.8200 | C13—H13 | 0.9300 |
| O2—H2B | 0.8172 | ||
| N1—Cu1—N1i | 180.000 (1) | C4—C3—H3 | 120.5 |
| N1—Cu1—O1i | 89.03 (16) | C2—C3—H3 | 120.5 |
| N1i—Cu1—O1i | 90.97 (16) | C3—C4—C5 | 118.0 (5) |
| N1—Cu1—O1 | 90.97 (16) | C3—C4—C7 | 121.8 (5) |
| N1i—Cu1—O1 | 89.03 (17) | C5—C4—C7 | 120.2 (5) |
| O1i—Cu1—O1 | 180.0 | C6—C5—C4 | 118.4 (5) |
| N1—Cu1—N2 | 91.15 (17) | C6—C5—H5 | 120.8 |
| N1i—Cu1—N2 | 88.85 (17) | C4—C5—H5 | 120.8 |
| O1i—Cu1—N2 | 86.47 (15) | N2—C6—C5 | 124.1 (5) |
| O1—Cu1—N2 | 93.53 (15) | N2—C6—H6 | 118.0 |
| N1—Cu1—N2i | 88.85 (17) | C5—C6—H6 | 118.0 |
| N1i—Cu1—N2i | 91.15 (17) | N3—C7—C4 | 124.0 (5) |
| O1i—Cu1—N2i | 93.53 (15) | N3—C7—S1 | 113.8 (4) |
| O1—Cu1—N2i | 86.47 (14) | C4—C7—S1 | 122.1 (4) |
| N2—Cu1—N2i | 180.0 (2) | N4—C8—C9 | 123.7 (5) |
| C7—S1—C8 | 87.1 (3) | N4—C8—S1 | 113.7 (4) |
| C1—N1—Cu1 | 159.4 (4) | C9—C8—S1 | 122.6 (4) |
| C6—N2—C2 | 116.5 (5) | C13—C9—C10 | 118.0 (5) |
| C6—N2—Cu1 | 121.5 (4) | C13—C9—C8 | 119.9 (5) |
| C2—N2—Cu1 | 122.0 (3) | C10—C9—C8 | 122.0 (5) |
| C7—N3—N4 | 112.5 (5) | C11—C10—C9 | 118.6 (5) |
| C8—N4—N3 | 112.8 (4) | C11—C10—H10 | 120.7 |
| C11—N5—C12 | 117.1 (5) | C9—C10—H10 | 120.7 |
| Cu1—O1—H1B | 118.7 | N5—C11—C10 | 124.0 (6) |
| Cu1—O1—H1C | 124.5 | N5—C11—H11 | 118.0 |
| H1B—O1—H1C | 108.3 | C10—C11—H11 | 118.0 |
| H2B—O2—H2C | 110.6 | N5—C12—C13 | 123.5 (6) |
| N1—C1—S2 | 179.8 (5) | N5—C12—H12 | 118.2 |
| N2—C2—C3 | 123.9 (5) | C13—C12—H12 | 118.2 |
| N2—C2—H2 | 118.0 | C12—C13—C9 | 118.7 (6) |
| C3—C2—H2 | 118.0 | C12—C13—H13 | 120.6 |
| C4—C3—C2 | 119.0 (5) | C9—C13—H13 | 120.6 |
| H··· | ||||
| O2—H2B···N5 | 0.82 | 2.03 | 2.835 (6) | 169 |
| O2—H2C···S2ii | 0.82 | 2.90 | 3.541 (4) | 137 |
| O1—H1B···S2iii | 0.82 | 2.50 | 3.303 (4) | 164 |
| O1—H1C···O2iv | 0.82 | 1.95 | 2.761 (6) | 171 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.82 | 2.03 | 2.835 (6) | 169 |
| O2—H2 | 0.82 | 2.90 | 3.541 (4) | 137 |
| O1—H1 | 0.82 | 2.50 | 3.303 (4) | 164 |
| O1—H1 | 0.82 | 1.95 | 2.761 (6) | 171 |
Symmetry codes: (i) ; (ii) ; (iii) .