Literature DB >> 21202184

Diaqua-bis(2,5-di-4-pyridyl-1,3,4-thia-diazole-κN)bis-(thio-cyanato-κN)copper(II) dihydrate.

Wei-Wu Ma1, Ming-Hua Yang.   

Abstract

In the title compound, [Cu(NCS)(2)(C(12)H(8)N(4)S)(2)(H(2)O)(2)]·2H(2)O, the Cu atom is located on an inversion center and displays an octa-hedral geometry. Two N atoms of two different 2,5-di-4-pyridyl-1,3,4-thia-diazole ligands and two N atoms from two separate thio-cyanate mol-ecules form the equatorial plane, while two coordinated water mol-ecules are in axial positions. The crystal structure is consolidated by extensive hydrogen bonding, forming a two-dimensional network.

Entities:  

Year:  2008        PMID: 21202184      PMCID: PMC2961085          DOI: 10.1107/S1600536808008854

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Moulton & Zaworotko (2001 ▶); Su et al. (2003 ▶); Zhang et al. (2005 ▶); Zhou et al. (2006 ▶).

Experimental

Crystal data

[Cu(NCS)2(C12H8N4S)2(H2O)2]·2H2O M = 732.33 Triclinic, a = 7.0555 (11) Å b = 8.3034 (13) Å c = 14.849 (2) Å α = 104.629 (2)° β = 93.067 (2)° γ = 112.228 (2)° V = 768.3 (2) Å3 Z = 1 Mo Kα radiation μ = 1.03 mm−1 T = 298 (2) K 0.28 × 0.24 × 0.19 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.760, T max = 0.828 3905 measured reflections 2692 independent reflections 1794 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.169 S = 1.07 2692 reflections 205 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.69 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808008854/dn2330sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808008854/dn2330Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NCS)2(C12H8N4S)2(H2O)2]·2H2OZ = 1
Mr = 732.33F000 = 375
Triclinic, P1Dx = 1.583 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.0555 (11) ÅCell parameters from 2692 reflections
b = 8.3034 (13) Åθ = 1.4–25.1º
c = 14.849 (2) ŵ = 1.03 mm1
α = 104.629 (2)ºT = 298 (2) K
β = 93.067 (2)ºBlock, blue
γ = 112.228 (2)º0.28 × 0.24 × 0.19 mm
V = 768.3 (2) Å3
Bruker APEXII area-detector diffractometer2692 independent reflections
Radiation source: fine-focus sealed tube1794 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.028
T = 298(2) Kθmax = 25.1º
φ and ω scansθmin = 1.4º
Absorption correction: multi-scan(SADABS; Sheldrick, 2004)h = −8→5
Tmin = 0.761, Tmax = 0.828k = −9→9
3905 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H-atom parameters constrained
wR(F2) = 0.169  w = 1/[σ2(Fo2) + (0.0774P)2 + 0.6059P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2692 reflectionsΔρmax = 0.44 e Å3
205 parametersΔρmin = −0.69 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50001.00000.00000.0423 (3)
S1−0.0367 (2)0.7797 (2)0.40422 (10)0.0484 (4)
S20.7893 (2)0.5558 (2)−0.03644 (12)0.0477 (4)
N10.6831 (7)0.8539 (6)−0.0062 (3)0.0417 (11)
N20.4011 (6)0.9385 (6)0.1283 (3)0.0349 (10)
N30.3261 (7)0.7924 (7)0.4413 (3)0.0486 (13)
N40.2304 (8)0.7563 (7)0.5165 (3)0.0489 (13)
N5−0.3536 (8)0.6276 (7)0.7101 (3)0.0511 (13)
O10.2491 (5)0.7683 (5)−0.0897 (3)0.0434 (9)
H1B0.13490.7366−0.07280.065*
H1C0.25960.6773−0.12230.065*
O2−0.6718 (6)0.4775 (6)0.8112 (3)0.0586 (12)
H2B−0.56870.52040.78800.088*
H2C−0.64150.45250.85820.088*
C10.7271 (8)0.7310 (8)−0.0188 (4)0.0347 (12)
C20.2117 (9)0.9123 (8)0.1465 (4)0.0436 (14)
H20.12230.92750.10430.052*
C30.1394 (9)0.8639 (8)0.2240 (4)0.0455 (14)
H30.00250.84070.23160.055*
C40.2713 (8)0.8505 (7)0.2895 (4)0.0379 (13)
C50.4715 (9)0.8795 (8)0.2725 (4)0.0475 (15)
H50.56600.87060.31500.057*
C60.5266 (9)0.9218 (8)0.1915 (4)0.0432 (14)
H60.66040.93970.18020.052*
C70.2060 (8)0.8066 (7)0.3769 (4)0.0395 (13)
C80.0424 (9)0.7481 (8)0.5080 (4)0.0418 (13)
C9−0.0929 (8)0.7148 (7)0.5800 (4)0.0379 (13)
C10−0.2927 (9)0.7063 (8)0.5682 (4)0.0442 (14)
H10−0.34400.72920.51600.053*
C11−0.4144 (9)0.6632 (8)0.6357 (4)0.0495 (15)
H11−0.54790.65930.62760.059*
C12−0.1584 (10)0.6393 (9)0.7221 (4)0.0559 (17)
H12−0.11120.61780.77570.067*
C13−0.0248 (9)0.6813 (8)0.6596 (4)0.0497 (15)
H130.10900.68710.67050.060*
U11U22U33U12U13U23
Cu10.0421 (6)0.0432 (6)0.0477 (6)0.0197 (5)0.0129 (4)0.0186 (5)
S10.0490 (9)0.0680 (11)0.0412 (9)0.0289 (8)0.0147 (7)0.0281 (8)
S20.0484 (9)0.0420 (9)0.0663 (11)0.0258 (7)0.0192 (8)0.0252 (8)
N10.044 (3)0.043 (3)0.052 (3)0.026 (2)0.015 (2)0.020 (2)
N20.032 (2)0.037 (3)0.038 (3)0.014 (2)0.009 (2)0.015 (2)
N30.045 (3)0.063 (3)0.043 (3)0.022 (3)0.012 (2)0.023 (3)
N40.048 (3)0.064 (3)0.041 (3)0.021 (3)0.014 (2)0.027 (3)
N50.050 (3)0.064 (4)0.044 (3)0.022 (3)0.017 (2)0.022 (3)
O10.035 (2)0.043 (2)0.051 (2)0.0140 (17)0.0117 (17)0.0118 (18)
O20.055 (3)0.059 (3)0.051 (3)0.013 (2)0.018 (2)0.011 (2)
C10.031 (3)0.045 (3)0.031 (3)0.014 (2)0.011 (2)0.016 (3)
C20.041 (3)0.052 (4)0.043 (3)0.018 (3)0.007 (3)0.023 (3)
C30.035 (3)0.056 (4)0.046 (3)0.013 (3)0.009 (3)0.022 (3)
C40.040 (3)0.034 (3)0.036 (3)0.011 (2)0.012 (2)0.009 (2)
C50.042 (3)0.064 (4)0.045 (4)0.026 (3)0.009 (3)0.025 (3)
C60.040 (3)0.054 (4)0.043 (3)0.022 (3)0.017 (3)0.020 (3)
C70.042 (3)0.039 (3)0.036 (3)0.014 (3)0.009 (3)0.012 (3)
C80.047 (3)0.043 (3)0.037 (3)0.017 (3)0.006 (3)0.014 (3)
C90.043 (3)0.035 (3)0.036 (3)0.015 (2)0.008 (2)0.012 (3)
C100.046 (3)0.053 (4)0.047 (3)0.026 (3)0.009 (3)0.026 (3)
C110.041 (3)0.052 (4)0.058 (4)0.020 (3)0.012 (3)0.017 (3)
C120.054 (4)0.075 (5)0.042 (4)0.023 (3)0.014 (3)0.026 (3)
C130.043 (3)0.066 (4)0.043 (4)0.022 (3)0.007 (3)0.023 (3)
Cu1—N12.071 (4)O2—H2C0.8159
Cu1—N1i2.071 (4)C2—C31.372 (8)
Cu1—O1i2.118 (4)C2—H20.9300
Cu1—O12.118 (4)C3—C41.365 (8)
Cu1—N22.178 (4)C3—H30.9300
Cu1—N2i2.178 (4)C4—C51.388 (8)
S1—C71.725 (6)C4—C71.485 (7)
S1—C81.726 (5)C5—C61.372 (7)
S2—C11.638 (6)C5—H50.9300
N1—C11.150 (7)C6—H60.9300
N2—C61.324 (7)C8—C91.479 (7)
N2—C21.325 (7)C9—C131.382 (7)
N3—C71.301 (7)C9—C101.384 (7)
N3—N41.375 (6)C10—C111.382 (8)
N4—C81.300 (7)C10—H100.9300
N5—C111.305 (7)C11—H110.9300
N5—C121.342 (8)C12—C131.372 (8)
O1—H1B0.8214C12—H120.9300
O1—H1C0.8200C13—H130.9300
O2—H2B0.8172
N1—Cu1—N1i180.000 (1)C4—C3—H3120.5
N1—Cu1—O1i89.03 (16)C2—C3—H3120.5
N1i—Cu1—O1i90.97 (16)C3—C4—C5118.0 (5)
N1—Cu1—O190.97 (16)C3—C4—C7121.8 (5)
N1i—Cu1—O189.03 (17)C5—C4—C7120.2 (5)
O1i—Cu1—O1180.0C6—C5—C4118.4 (5)
N1—Cu1—N291.15 (17)C6—C5—H5120.8
N1i—Cu1—N288.85 (17)C4—C5—H5120.8
O1i—Cu1—N286.47 (15)N2—C6—C5124.1 (5)
O1—Cu1—N293.53 (15)N2—C6—H6118.0
N1—Cu1—N2i88.85 (17)C5—C6—H6118.0
N1i—Cu1—N2i91.15 (17)N3—C7—C4124.0 (5)
O1i—Cu1—N2i93.53 (15)N3—C7—S1113.8 (4)
O1—Cu1—N2i86.47 (14)C4—C7—S1122.1 (4)
N2—Cu1—N2i180.0 (2)N4—C8—C9123.7 (5)
C7—S1—C887.1 (3)N4—C8—S1113.7 (4)
C1—N1—Cu1159.4 (4)C9—C8—S1122.6 (4)
C6—N2—C2116.5 (5)C13—C9—C10118.0 (5)
C6—N2—Cu1121.5 (4)C13—C9—C8119.9 (5)
C2—N2—Cu1122.0 (3)C10—C9—C8122.0 (5)
C7—N3—N4112.5 (5)C11—C10—C9118.6 (5)
C8—N4—N3112.8 (4)C11—C10—H10120.7
C11—N5—C12117.1 (5)C9—C10—H10120.7
Cu1—O1—H1B118.7N5—C11—C10124.0 (6)
Cu1—O1—H1C124.5N5—C11—H11118.0
H1B—O1—H1C108.3C10—C11—H11118.0
H2B—O2—H2C110.6N5—C12—C13123.5 (6)
N1—C1—S2179.8 (5)N5—C12—H12118.2
N2—C2—C3123.9 (5)C13—C12—H12118.2
N2—C2—H2118.0C12—C13—C9118.7 (6)
C3—C2—H2118.0C12—C13—H13120.6
C4—C3—C2119.0 (5)C9—C13—H13120.6
D—H···AD—HH···AD···AD—H···A
O2—H2B···N50.822.032.835 (6)169
O2—H2C···S2ii0.822.903.541 (4)137
O1—H1B···S2iii0.822.503.303 (4)164
O1—H1C···O2iv0.821.952.761 (6)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2B⋯N50.822.032.835 (6)169
O2—H2C⋯S2i0.822.903.541 (4)137
O1—H1B⋯S2ii0.822.503.303 (4)164
O1—H1C⋯O2iii0.821.952.761 (6)171

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  From molecules to crystal engineering: supramolecular isomerism and polymorphism in network solids.

Authors:  B Moulton; M J Zaworotko
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Ligand-directed molecular architectures: self-assembly of two-dimensional rectangular metallacycles and three-dimensional trigonal or tetragonal prisms.

Authors:  Cheng-Yong Su; Yue-Peng Cai; Chun-Long Chen; Mark D Smith; Wolfgang Kaim; Hans-Conrad zur Loye
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

  3 in total
  2 in total

1.  Diaqua-(2,5-di-4-pyridyl-1,3,4-thia-diazole-κN)bis-(thio-cyanato-κN)nickel(II) dihydrate.

Authors:  Ming-Hua Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-27

2.  3-Benzyl-7-(2,4-dichloro-phen-yl)-4H-1,3,4-thia-diazolo[2,3-c][1,2,4]triazin-4-one.

Authors:  Hoong-Kun Fun; Suhana Arshad; B K Sarojini; U A Imran; B G Krishna
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-16
  2 in total

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