Literature DB >> 22719518

2-Amino-ethanaminium iodide.

Alan R Kennedy, Maurice O Okoth.   

Abstract

The title salt, [NH(3)CH(2)CH(2)NH(2)](+)·I(-), has an array structure based on strong inter-molecular N-H⋯N hydrogen bonding formed between the ammonium and amine groups of adjacent cations. This inter-action gives a helical chain of cations that runs parallel to the b axis. The four remaining NH group H atoms all form hydrogen bonds to the iodide anion, and these iodide anions lie in channels parallel to the cation-cation chains.

Entities:  

Year:  2012        PMID: 22719518      PMCID: PMC3379320          DOI: 10.1107/S160053681202065X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For syntheses and structures of salt forms of the related ethyl­ene-1,2-diammonium, see: Chen (2009 ▶); Saidi et al. (2011 ▶). For a structural example of a complex of ethyl­ene-1,2-diammonium, see: Zhang et al. (2006 ▶). For the synthesis that gave the title compound as a by-product, see: Kennedy et al. (2011 ▶). For CN bond length changes in another monoprotonated symmetrical diamine, see: Craig et al. (2012 ▶).

Experimental

Crystal data

C2H9N2 +·I− M = 188.01 Orthorhombic, a = 8.1380 (2) Å b = 8.6259 (2) Å c = 16.7854 (6) Å V = 1178.29 (6) Å3 Z = 8 Mo Kα radiation μ = 5.29 mm−1 T = 123 K 0.28 × 0.08 × 0.04 mm

Data collection

Oxford Diffraction Gemini S diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.405, T max = 0.805 13735 measured reflections 1675 independent reflections 1405 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.016 wR(F 2) = 0.035 S = 1.08 1675 reflections 83 parameters All H-atom parameters refined Δρmax = 0.58 e Å−3 Δρmin = −0.39 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202065X/br2201sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202065X/br2201Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202065X/br2201Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H9N2+·IF(000) = 704
Mr = 188.01Dx = 2.120 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 7738 reflections
a = 8.1380 (2) Åθ = 3.4–30.4°
b = 8.6259 (2) ŵ = 5.29 mm1
c = 16.7854 (6) ÅT = 123 K
V = 1178.29 (6) Å3Cut needle, colourless
Z = 80.28 × 0.08 × 0.04 mm
Oxford Diffraction Gemini S diffractometer1675 independent reflections
Radiation source: fine-focus sealed tube1405 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
ω scansθmax = 30.5°, θmin = 3.5°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)h = −11→11
Tmin = 0.405, Tmax = 0.805k = −12→12
13735 measured reflectionsl = −23→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.016All H-atom parameters refined
wR(F2) = 0.035w = 1/[σ2(Fo2) + (0.0188P)2 + 0.0175P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.003
1675 reflectionsΔρmax = 0.58 e Å3
83 parametersΔρmin = −0.39 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00618 (17)
Experimental. Absorption correction: CrysAlis PRO (Oxford Diffraction, 2010). Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.153737 (12)0.243717 (9)0.639779 (7)0.01478 (5)
N10.57239 (17)0.09977 (16)0.66467 (10)0.0152 (3)
N20.91366 (18)−0.12957 (16)0.57234 (10)0.0166 (3)
C10.72638 (19)0.00806 (18)0.65975 (11)0.0156 (3)
C20.7645 (2)−0.03399 (18)0.57391 (10)0.0164 (3)
H10.720 (2)−0.083 (2)0.6923 (11)0.022 (5)*
H20.812 (2)0.073 (2)0.6768 (12)0.025 (5)*
H30.677 (2)−0.0965 (19)0.5534 (11)0.020 (5)*
H40.771 (2)0.0590 (19)0.5396 (11)0.018 (4)*
H1N0.573 (3)0.206 (3)0.6334 (13)0.030 (5)*
H2N0.487 (2)0.042 (2)0.6523 (12)0.027 (5)*
H3N0.561 (2)0.131 (2)0.7119 (12)0.028 (6)*
H4N0.932 (2)−0.161 (2)0.5259 (13)0.029 (5)*
H5N0.998 (2)−0.073 (2)0.5848 (13)0.029 (6)*
U11U22U33U12U13U23
I10.01452 (7)0.01487 (7)0.01494 (8)0.00109 (3)−0.00020 (4)−0.00022 (4)
N10.0146 (7)0.0161 (7)0.0150 (8)−0.0014 (5)0.0018 (6)−0.0016 (5)
N20.0151 (7)0.0194 (7)0.0152 (8)0.0000 (5)0.0019 (6)−0.0009 (6)
C10.0140 (8)0.0188 (8)0.0141 (8)−0.0001 (6)−0.0006 (6)0.0007 (6)
C20.0164 (8)0.0191 (7)0.0136 (8)0.0010 (6)0.0007 (7)0.0010 (6)
N1—C11.484 (2)N2—H5N0.866 (19)
N1—H1N1.06 (2)C1—C21.518 (2)
N1—H2N0.882 (19)C1—H10.959 (18)
N1—H3N0.84 (2)C1—H20.937 (19)
N2—C21.467 (2)C2—H30.959 (17)
N2—H4N0.84 (2)C2—H40.989 (18)
C1—N1—H1N115.5 (12)C2—C1—H1110.8 (11)
C1—N1—H2N110.4 (12)N1—C1—H2107.0 (11)
H1N—N1—H2N112.4 (17)C2—C1—H2106.3 (13)
C1—N1—H3N108.5 (13)H1—C1—H2110.7 (18)
H1N—N1—H3N100.7 (16)N2—C2—C1108.70 (14)
H2N—N1—H3N108.6 (17)N2—C2—H3107.1 (10)
C2—N2—H4N110.2 (13)C1—C2—H3108.8 (11)
C2—N2—H5N109.6 (12)N2—C2—H4113.8 (10)
H4N—N2—H5N105.2 (18)C1—C2—H4111.7 (11)
N1—C1—C2110.67 (14)H3—C2—H4106.6 (15)
N1—C1—H1111.2 (11)
N1—C1—C2—N2−177.75 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N2i1.06 (2)1.75 (2)2.805 (2)173.0 (19)
N1—H2N···I10.882 (19)3.231 (18)3.6502 (14)111.6 (13)
N1—H2N···I1ii0.882 (19)2.820 (19)3.6047 (14)148.9 (15)
N1—H3N···I1iii0.84 (2)2.78 (2)3.5713 (16)157.9 (16)
N2—H4N···I1iv0.84 (2)2.96 (2)3.7346 (16)155.5 (16)
N2—H5N···I1v0.866 (19)3.152 (19)3.9328 (15)151.2 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯N2i1.06 (2)1.75 (2)2.805 (2)173.0 (19)
N1—H2N⋯I10.882 (19)3.231 (18)3.6502 (14)111.6 (13)
N1—H2N⋯I1ii0.882 (19)2.820 (19)3.6047 (14)148.9 (15)
N1—H3N⋯I1iii0.84 (2)2.78 (2)3.5713 (16)157.9 (16)
N2—H4N⋯I1iv0.84 (2)2.96 (2)3.7346 (16)155.5 (16)
N2—H5N⋯I1v0.866 (19)3.152 (19)3.9328 (15)151.2 (14)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  5 in total

1.  [(H2en)7(C2O4)2]n(Pb4I18)n.4nH2O, a new type of perovskite co-templated by both organic cations and anions.

Authors:  Zhang-Jing Zhang; Guo-Cong Guo; Gang Xu; Ming-Lai Fu; Jian-Ping Zou; Jin-Shun Huang
Journal:  Inorg Chem       Date:  2006-12-11       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Ethyl-enediammonium dichloro-iodide chloride.

Authors:  Li-Zhuang Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

4.  5,7,7,12,14,14-Hexamethyl-4,8-diaza-1,11-diazo-niocyclotetra-deca-4,11-diene diiodide dihydrate.

Authors:  Alan R Kennedy; Samwel T Lutta; Catriona A Morrison; Maurice O Okoth; Daniel M Orang'o
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-23

5.  1,4-Dimethyl-piperazin-1-ium 3-hy-droxy-2-naphtho-ate.

Authors:  Gemma E Craig; Carla Johnson; Alan R Kennedy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-17
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.