| Literature DB >> 22719518 |
Alan R Kennedy, Maurice O Okoth.
Abstract
The title salt, [NH(3)CH(2)CH(2)NH(2)](+)·I(-), has an array structure based on strong inter-molecular N-H⋯N hydrogen bonding formed between the ammonium and amine groups of adjacent cations. This inter-action gives a helical chain of cations that runs parallel to the b axis. The four remaining NH group H atoms all form hydrogen bonds to the iodide anion, and these iodide anions lie in channels parallel to the cation-cation chains.Entities:
Year: 2012 PMID: 22719518 PMCID: PMC3379320 DOI: 10.1107/S160053681202065X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C2H9N2+·I− | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 7738 reflections |
| θ = 3.4–30.4° | |
| µ = 5.29 mm−1 | |
| Cut needle, colourless | |
| 0.28 × 0.08 × 0.04 mm |
| Oxford Diffraction Gemini S diffractometer | 1675 independent reflections |
| Radiation source: fine-focus sealed tube | 1405 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 30.5°, θmin = 3.5° |
| Absorption correction: multi-scan ( | |
| 13735 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| All H-atom parameters refined | |
| (Δ/σ)max = 0.003 | |
| 1675 reflections | Δρmax = 0.58 e Å−3 |
| 83 parameters | Δρmin = −0.39 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00618 (17) |
| Experimental. Absorption correction: CrysAlis PRO (Oxford Diffraction, 2010). Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| I1 | 0.153737 (12) | 0.243717 (9) | 0.639779 (7) | 0.01478 (5) | |
| N1 | 0.57239 (17) | 0.09977 (16) | 0.66467 (10) | 0.0152 (3) | |
| N2 | 0.91366 (18) | −0.12957 (16) | 0.57234 (10) | 0.0166 (3) | |
| C1 | 0.72638 (19) | 0.00806 (18) | 0.65975 (11) | 0.0156 (3) | |
| C2 | 0.7645 (2) | −0.03399 (18) | 0.57391 (10) | 0.0164 (3) | |
| H1 | 0.720 (2) | −0.083 (2) | 0.6923 (11) | 0.022 (5)* | |
| H2 | 0.812 (2) | 0.073 (2) | 0.6768 (12) | 0.025 (5)* | |
| H3 | 0.677 (2) | −0.0965 (19) | 0.5534 (11) | 0.020 (5)* | |
| H4 | 0.771 (2) | 0.0590 (19) | 0.5396 (11) | 0.018 (4)* | |
| H1N | 0.573 (3) | 0.206 (3) | 0.6334 (13) | 0.030 (5)* | |
| H2N | 0.487 (2) | 0.042 (2) | 0.6523 (12) | 0.027 (5)* | |
| H3N | 0.561 (2) | 0.131 (2) | 0.7119 (12) | 0.028 (6)* | |
| H4N | 0.932 (2) | −0.161 (2) | 0.5259 (13) | 0.029 (5)* | |
| H5N | 0.998 (2) | −0.073 (2) | 0.5848 (13) | 0.029 (6)* |
| I1 | 0.01452 (7) | 0.01487 (7) | 0.01494 (8) | 0.00109 (3) | −0.00020 (4) | −0.00022 (4) |
| N1 | 0.0146 (7) | 0.0161 (7) | 0.0150 (8) | −0.0014 (5) | 0.0018 (6) | −0.0016 (5) |
| N2 | 0.0151 (7) | 0.0194 (7) | 0.0152 (8) | 0.0000 (5) | 0.0019 (6) | −0.0009 (6) |
| C1 | 0.0140 (8) | 0.0188 (8) | 0.0141 (8) | −0.0001 (6) | −0.0006 (6) | 0.0007 (6) |
| C2 | 0.0164 (8) | 0.0191 (7) | 0.0136 (8) | 0.0010 (6) | 0.0007 (7) | 0.0010 (6) |
| N1—C1 | 1.484 (2) | N2—H5N | 0.866 (19) |
| N1—H1N | 1.06 (2) | C1—C2 | 1.518 (2) |
| N1—H2N | 0.882 (19) | C1—H1 | 0.959 (18) |
| N1—H3N | 0.84 (2) | C1—H2 | 0.937 (19) |
| N2—C2 | 1.467 (2) | C2—H3 | 0.959 (17) |
| N2—H4N | 0.84 (2) | C2—H4 | 0.989 (18) |
| C1—N1—H1N | 115.5 (12) | C2—C1—H1 | 110.8 (11) |
| C1—N1—H2N | 110.4 (12) | N1—C1—H2 | 107.0 (11) |
| H1N—N1—H2N | 112.4 (17) | C2—C1—H2 | 106.3 (13) |
| C1—N1—H3N | 108.5 (13) | H1—C1—H2 | 110.7 (18) |
| H1N—N1—H3N | 100.7 (16) | N2—C2—C1 | 108.70 (14) |
| H2N—N1—H3N | 108.6 (17) | N2—C2—H3 | 107.1 (10) |
| C2—N2—H4N | 110.2 (13) | C1—C2—H3 | 108.8 (11) |
| C2—N2—H5N | 109.6 (12) | N2—C2—H4 | 113.8 (10) |
| H4N—N2—H5N | 105.2 (18) | C1—C2—H4 | 111.7 (11) |
| N1—C1—C2 | 110.67 (14) | H3—C2—H4 | 106.6 (15) |
| N1—C1—H1 | 111.2 (11) | ||
| N1—C1—C2—N2 | −177.75 (12) |
| H··· | ||||
| N1—H1 | 1.06 (2) | 1.75 (2) | 2.805 (2) | 173.0 (19) |
| N1—H2 | 0.882 (19) | 3.231 (18) | 3.6502 (14) | 111.6 (13) |
| N1—H2 | 0.882 (19) | 2.820 (19) | 3.6047 (14) | 148.9 (15) |
| N1—H3 | 0.84 (2) | 2.78 (2) | 3.5713 (16) | 157.9 (16) |
| N2—H4 | 0.84 (2) | 2.96 (2) | 3.7346 (16) | 155.5 (16) |
| N2—H5 | 0.866 (19) | 3.152 (19) | 3.9328 (15) | 151.2 (14) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 1.06 (2) | 1.75 (2) | 2.805 (2) | 173.0 (19) |
| N1—H2 | 0.882 (19) | 3.231 (18) | 3.6502 (14) | 111.6 (13) |
| N1—H2 | 0.882 (19) | 2.820 (19) | 3.6047 (14) | 148.9 (15) |
| N1—H3 | 0.84 (2) | 2.78 (2) | 3.5713 (16) | 157.9 (16) |
| N2—H4 | 0.84 (2) | 2.96 (2) | 3.7346 (16) | 155.5 (16) |
| N2—H5 | 0.866 (19) | 3.152 (19) | 3.9328 (15) | 151.2 (14) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .