| Literature DB >> 21522429 |
Alan R Kennedy, Samwel T Lutta, Catriona A Morrison, Maurice O Okoth, Daniel M Orang'o.
Abstract
The asymmetric unit of the title compound, C(16)H(34)N(4) (2+)·2I(-)·2H(2)O, contains one half-cation, one iodide anion and one water mol-ecule. The cation has crystallographically imposed centrosymmetric symmetry. Despite some differences in the unit-cell dimensions, packing analysis on a cluster of 15 cations and a comparison of the hydrogen bonding suggests that this compound is isostructural with its bromide analogue. Inter-molecular hydrogen bonding forms eight-membered [H-O-H⋯I](2) and [H-N-H⋯I](2) rings and creates a sheet structure.Entities:
Year: 2011 PMID: 21522429 PMCID: PMC3052064 DOI: 10.1107/S1600536811005848
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H34N42+·2I−·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 10421 reflections | |
| θ = 2.9–27.5° | |
| µ = 2.82 mm−1 | |
| α = 74.673 (2)° | |
| β = 66.267 (1)° | Block, colourless |
| γ = 75.809 (2)° | 0.20 × 0.14 × 0.10 mm |
| Bruker–Nonius Roper CCD diffractometer | 2563 independent reflections |
| Radiation source: Bruker–Nonius FR591 rotating anode | 2478 reflections with |
| graphite | |
| Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.2° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 12010 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2563 reflections | Δρmax = 0.99 e Å−3 |
| 127 parameters | Δρmin = −0.75 e Å−3 |
| 3 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0243 (13) |
| Experimental. Southampton NCS collection 2010src0073 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| I1 | 0.214555 (16) | 0.460869 (15) | 0.757490 (15) | 0.02330 (8) | |
| O1W | 0.6274 (2) | 0.21795 (19) | 0.5780 (2) | 0.0336 (4) | |
| H1W | 0.525 (3) | 0.270 (3) | 0.633 (3) | 0.050* | |
| H2W | 0.671 (3) | 0.295 (3) | 0.496 (3) | 0.050* | |
| N1 | 0.7414 (2) | 0.60362 (18) | −0.1726 (2) | 0.0139 (3) | |
| N2 | 0.6077 (2) | 0.29338 (18) | 0.0038 (2) | 0.0165 (3) | |
| C1 | 0.7419 (3) | 0.4771 (2) | −0.2576 (2) | 0.0185 (4) | |
| H1A | 0.8389 | 0.4822 | −0.3694 | 0.022* | |
| H1B | 0.6296 | 0.4954 | −0.2762 | 0.022* | |
| C2 | 0.7653 (3) | 0.3134 (2) | −0.1486 (3) | 0.0209 (4) | |
| H2A | 0.7880 | 0.2286 | −0.2140 | 0.025* | |
| H2B | 0.8680 | 0.3019 | −0.1159 | 0.025* | |
| C3 | 0.6167 (3) | 0.1933 (2) | 0.1357 (3) | 0.0174 (4) | |
| C4 | 0.4514 (3) | 0.1743 (2) | 0.2906 (2) | 0.0182 (4) | |
| H4A | 0.4494 | 0.2381 | 0.3696 | 0.022* | |
| H4B | 0.4604 | 0.0599 | 0.3474 | 0.022* | |
| C5 | 0.2753 (3) | 0.2226 (2) | 0.2659 (2) | 0.0158 (4) | |
| C6 | 0.7788 (3) | 0.0876 (3) | 0.1592 (3) | 0.0275 (5) | |
| H6A | 0.7804 | −0.0226 | 0.1507 | 0.041* | |
| H6B | 0.7780 | 0.0881 | 0.2711 | 0.041* | |
| H6C | 0.8836 | 0.1283 | 0.0712 | 0.041* | |
| C7 | 0.2617 (3) | 0.1223 (2) | 0.1546 (3) | 0.0214 (4) | |
| H7A | 0.1452 | 0.1527 | 0.1456 | 0.032* | |
| H7B | 0.2788 | 0.0079 | 0.2052 | 0.032* | |
| H7C | 0.3523 | 0.1417 | 0.0414 | 0.032* | |
| C8 | 0.1260 (3) | 0.2045 (2) | 0.4379 (3) | 0.0235 (4) | |
| H8A | 0.1421 | 0.2616 | 0.5118 | 0.035* | |
| H8B | 0.1266 | 0.0902 | 0.4895 | 0.035* | |
| H8C | 0.0134 | 0.2502 | 0.4230 | 0.035* | |
| H1N | 0.649 (3) | 0.599 (3) | −0.076 (3) | 0.020 (6)* | |
| H2N | 0.829 (4) | 0.584 (3) | −0.149 (3) | 0.029 (7)* |
| I1 | 0.01952 (10) | 0.03155 (11) | 0.01896 (10) | −0.00480 (6) | −0.00879 (7) | −0.00124 (6) |
| O1W | 0.0384 (10) | 0.0238 (8) | 0.0371 (10) | −0.0029 (7) | −0.0157 (8) | −0.0017 (7) |
| N1 | 0.0139 (8) | 0.0133 (7) | 0.0155 (8) | −0.0038 (6) | −0.0075 (7) | 0.0007 (6) |
| N2 | 0.0160 (8) | 0.0143 (7) | 0.0190 (8) | −0.0048 (6) | −0.0052 (7) | −0.0025 (6) |
| C1 | 0.0213 (10) | 0.0168 (9) | 0.0173 (10) | −0.0052 (7) | −0.0053 (8) | −0.0036 (7) |
| C2 | 0.0180 (10) | 0.0141 (9) | 0.0256 (11) | −0.0041 (7) | −0.0017 (8) | −0.0040 (8) |
| C3 | 0.0173 (9) | 0.0153 (9) | 0.0240 (10) | −0.0027 (7) | −0.0105 (8) | −0.0055 (7) |
| C4 | 0.0197 (10) | 0.0172 (9) | 0.0185 (9) | −0.0036 (7) | −0.0101 (8) | 0.0011 (7) |
| C5 | 0.0190 (10) | 0.0118 (8) | 0.0171 (9) | −0.0053 (7) | −0.0092 (8) | 0.0031 (7) |
| C6 | 0.0221 (11) | 0.0293 (11) | 0.0303 (12) | 0.0028 (8) | −0.0137 (9) | −0.0038 (9) |
| C7 | 0.0261 (11) | 0.0155 (9) | 0.0284 (11) | −0.0071 (8) | −0.0154 (9) | −0.0012 (8) |
| C8 | 0.0212 (11) | 0.0219 (10) | 0.0218 (11) | −0.0070 (8) | −0.0055 (8) | 0.0044 (8) |
| O1W—H1W | 0.877 (17) | C4—C5 | 1.524 (3) |
| O1W—H2W | 0.873 (17) | C4—H4A | 0.9900 |
| N1—C1 | 1.485 (2) | C4—H4B | 0.9900 |
| N1—C5i | 1.524 (2) | C5—N1i | 1.524 (2) |
| N1—H1N | 0.89 (3) | C5—C8 | 1.524 (3) |
| N1—H2N | 0.81 (3) | C5—C7 | 1.524 (3) |
| N2—C3 | 1.269 (3) | C6—H6A | 0.9800 |
| N2—C2 | 1.462 (2) | C6—H6B | 0.9800 |
| C1—C2 | 1.512 (3) | C6—H6C | 0.9800 |
| C1—H1A | 0.9900 | C7—H7A | 0.9800 |
| C1—H1B | 0.9900 | C7—H7B | 0.9800 |
| C2—H2A | 0.9900 | C7—H7C | 0.9800 |
| C2—H2B | 0.9900 | C8—H8A | 0.9800 |
| C3—C6 | 1.504 (3) | C8—H8B | 0.9800 |
| C3—C4 | 1.510 (3) | C8—H8C | 0.9800 |
| H1W—O1W—H2W | 101 (2) | C5—C4—H4B | 107.8 |
| C1—N1—C5i | 117.45 (15) | H4A—C4—H4B | 107.1 |
| C1—N1—H1N | 107.0 (15) | N1i—C5—C4 | 109.64 (15) |
| C5i—N1—H1N | 105.9 (15) | N1i—C5—C8 | 109.95 (16) |
| C1—N1—H2N | 109.8 (18) | C4—C5—C8 | 109.65 (16) |
| C5i—N1—H2N | 108.5 (18) | N1i—C5—C7 | 105.81 (15) |
| H1N—N1—H2N | 108 (2) | C4—C5—C7 | 111.51 (16) |
| C3—N2—C2 | 120.48 (17) | C8—C5—C7 | 110.21 (16) |
| N1—C1—C2 | 109.64 (16) | C3—C6—H6A | 109.5 |
| N1—C1—H1A | 109.7 | C3—C6—H6B | 109.5 |
| C2—C1—H1A | 109.7 | H6A—C6—H6B | 109.5 |
| N1—C1—H1B | 109.7 | C3—C6—H6C | 109.5 |
| C2—C1—H1B | 109.7 | H6A—C6—H6C | 109.5 |
| H1A—C1—H1B | 108.2 | H6B—C6—H6C | 109.5 |
| N2—C2—C1 | 110.39 (16) | C5—C7—H7A | 109.5 |
| N2—C2—H2A | 109.6 | C5—C7—H7B | 109.5 |
| C1—C2—H2A | 109.6 | H7A—C7—H7B | 109.5 |
| N2—C2—H2B | 109.6 | C5—C7—H7C | 109.5 |
| C1—C2—H2B | 109.6 | H7A—C7—H7C | 109.5 |
| H2A—C2—H2B | 108.1 | H7B—C7—H7C | 109.5 |
| N2—C3—C6 | 127.05 (19) | C5—C8—H8A | 109.5 |
| N2—C3—C4 | 119.23 (17) | C5—C8—H8B | 109.5 |
| C6—C3—C4 | 113.71 (17) | H8A—C8—H8B | 109.5 |
| C3—C4—C5 | 118.10 (16) | C5—C8—H8C | 109.5 |
| C3—C4—H4A | 107.8 | H8A—C8—H8C | 109.5 |
| C5—C4—H4A | 107.8 | H8B—C8—H8C | 109.5 |
| C3—C4—H4B | 107.8 | ||
| C5i—N1—C1—C2 | 178.16 (16) | N2—C3—C4—C5 | 23.3 (3) |
| C3—N2—C2—C1 | −156.80 (17) | C6—C3—C4—C5 | −157.41 (17) |
| N1—C1—C2—N2 | 69.8 (2) | C3—C4—C5—N1i | −55.5 (2) |
| C2—N2—C3—C6 | 1.3 (3) | C3—C4—C5—C8 | −176.29 (16) |
| C2—N2—C3—C4 | −179.47 (16) | C3—C4—C5—C7 | 61.4 (2) |
| H··· | ||||
| N1—H1N···N2i | 0.89 (3) | 2.04 (3) | 2.744 (2) | 136 (2) |
| O1W—H1W···I1 | 0.88 (2) | 2.71 (2) | 3.5753 (18) | 171 (3) |
| O1W—H2W···I1ii | 0.87 (2) | 2.68 (2) | 3.5494 (17) | 176 (3) |
| N1—H2N···I1ii | 0.81 (3) | 3.23 (3) | 3.6895 (17) | 119 (2) |
| N1—H2N···I1iii | 0.81 (3) | 2.99 (3) | 3.7110 (18) | 149 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.89 (3) | 2.04 (3) | 2.744 (2) | 136 (2) |
| O1 | 0.88 (2) | 2.71 (2) | 3.5753 (18) | 171 (3) |
| O1 | 0.87 (2) | 2.68 (2) | 3.5494 (17) | 176 (3) |
| N1—H2 | 0.81 (3) | 3.23 (3) | 3.6895 (17) | 119 (2) |
| N1—H2 | 0.81 (3) | 2.99 (3) | 3.7110 (18) | 149 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .