Literature DB >> 21522429

5,7,7,12,14,14-Hexamethyl-4,8-diaza-1,11-diazo-niocyclotetra-deca-4,11-diene diiodide dihydrate.

Alan R Kennedy, Samwel T Lutta, Catriona A Morrison, Maurice O Okoth, Daniel M Orang'o.   

Abstract

The asymmetric unit of the title compound, C(16)H(34)N(4) (2+)·2I(-)·2H(2)O, contains one half-cation, one iodide anion and one water mol-ecule. The cation has crystallographically imposed centrosymmetric symmetry. Despite some differences in the unit-cell dimensions, packing analysis on a cluster of 15 cations and a comparison of the hydrogen bonding suggests that this compound is isostructural with its bromide analogue. Inter-molecular hydrogen bonding forms eight-membered [H-O-H⋯I](2) and [H-N-H⋯I](2) rings and creates a sheet structure.

Entities:  

Year:  2011        PMID: 21522429      PMCID: PMC3052064          DOI: 10.1107/S1600536811005848

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation and structure of the equivalent bromide salt, see: Rohovec et al. (1999 ▶). For the structure of the perchlorate salt, see: Bi et al. (2008 ▶). For structures of representative transition metal complexes, see: Bieńko et al. (2007 ▶); Yang (2005 ▶); Ballester et al. (2000 ▶); Endicott et al. (1981 ▶); Wester et al. (1977 ▶); Goedken et al. (1973 ▶). Macrocyclic metal complexes have been studied extensively owing to their similarity to metallobiomolecules, and in order to further understanding of biological mechanisms, see: Merrell et al. (1977 ▶). The packing analysis was performed with Mercury (Macrae et al., 2008 ▶).

Experimental

Crystal data

C16H34N4 2+·2I−·2H2O M = 572.30 Triclinic, a = 8.4098 (3) Å b = 8.7252 (2) Å c = 8.7724 (3) Å α = 74.673 (2)° β = 66.267 (1)° γ = 75.809 (2)° V = 561.24 (3) Å3 Z = 1 Mo Kα radiation μ = 2.82 mm−1 T = 120 K 0.20 × 0.14 × 0.10 mm

Data collection

Bruker–Nonius Roper CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.673, T max = 0.746 12010 measured reflections 2563 independent reflections 2478 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.046 S = 1.18 2563 reflections 127 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.99 e Å−3 Δρmin = −0.75 e Å−3 Data collection: COLLECT (Hooft, 1988 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT ; data reduction: DENZO and COLLECT; program(s) used to solve structure: SIR2004 (Burla et al., 2005) ▶; program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005848/rk2263sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005848/rk2263Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H34N42+·2I·2H2OZ = 1
Mr = 572.30F(000) = 284
Triclinic, P1Dx = 1.693 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4098 (3) ÅCell parameters from 10421 reflections
b = 8.7252 (2) Åθ = 2.9–27.5°
c = 8.7724 (3) ŵ = 2.82 mm1
α = 74.673 (2)°T = 120 K
β = 66.267 (1)°Block, colourless
γ = 75.809 (2)°0.20 × 0.14 × 0.10 mm
V = 561.24 (3) Å3
Bruker–Nonius Roper CCD diffractometer2563 independent reflections
Radiation source: Bruker–Nonius FR591 rotating anode2478 reflections with I > 2σ(I)
graphiteRint = 0.030
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.2°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −11→11
Tmin = 0.673, Tmax = 0.746l = −11→11
12010 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.019H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.046w = 1/[σ2(Fo2) + (0.0124P)2 + 0.33P] where P = (Fo2 + 2Fc2)/3
S = 1.18(Δ/σ)max = 0.001
2563 reflectionsΔρmax = 0.99 e Å3
127 parametersΔρmin = −0.75 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0243 (13)
Experimental. Southampton NCS collection 2010src0073
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.214555 (16)0.460869 (15)0.757490 (15)0.02330 (8)
O1W0.6274 (2)0.21795 (19)0.5780 (2)0.0336 (4)
H1W0.525 (3)0.270 (3)0.633 (3)0.050*
H2W0.671 (3)0.295 (3)0.496 (3)0.050*
N10.7414 (2)0.60362 (18)−0.1726 (2)0.0139 (3)
N20.6077 (2)0.29338 (18)0.0038 (2)0.0165 (3)
C10.7419 (3)0.4771 (2)−0.2576 (2)0.0185 (4)
H1A0.83890.4822−0.36940.022*
H1B0.62960.4954−0.27620.022*
C20.7653 (3)0.3134 (2)−0.1486 (3)0.0209 (4)
H2A0.78800.2286−0.21400.025*
H2B0.86800.3019−0.11590.025*
C30.6167 (3)0.1933 (2)0.1357 (3)0.0174 (4)
C40.4514 (3)0.1743 (2)0.2906 (2)0.0182 (4)
H4A0.44940.23810.36960.022*
H4B0.46040.05990.34740.022*
C50.2753 (3)0.2226 (2)0.2659 (2)0.0158 (4)
C60.7788 (3)0.0876 (3)0.1592 (3)0.0275 (5)
H6A0.7804−0.02260.15070.041*
H6B0.77800.08810.27110.041*
H6C0.88360.12830.07120.041*
C70.2617 (3)0.1223 (2)0.1546 (3)0.0214 (4)
H7A0.14520.15270.14560.032*
H7B0.27880.00790.20520.032*
H7C0.35230.14170.04140.032*
C80.1260 (3)0.2045 (2)0.4379 (3)0.0235 (4)
H8A0.14210.26160.51180.035*
H8B0.12660.09020.48950.035*
H8C0.01340.25020.42300.035*
H1N0.649 (3)0.599 (3)−0.076 (3)0.020 (6)*
H2N0.829 (4)0.584 (3)−0.149 (3)0.029 (7)*
U11U22U33U12U13U23
I10.01952 (10)0.03155 (11)0.01896 (10)−0.00480 (6)−0.00879 (7)−0.00124 (6)
O1W0.0384 (10)0.0238 (8)0.0371 (10)−0.0029 (7)−0.0157 (8)−0.0017 (7)
N10.0139 (8)0.0133 (7)0.0155 (8)−0.0038 (6)−0.0075 (7)0.0007 (6)
N20.0160 (8)0.0143 (7)0.0190 (8)−0.0048 (6)−0.0052 (7)−0.0025 (6)
C10.0213 (10)0.0168 (9)0.0173 (10)−0.0052 (7)−0.0053 (8)−0.0036 (7)
C20.0180 (10)0.0141 (9)0.0256 (11)−0.0041 (7)−0.0017 (8)−0.0040 (8)
C30.0173 (9)0.0153 (9)0.0240 (10)−0.0027 (7)−0.0105 (8)−0.0055 (7)
C40.0197 (10)0.0172 (9)0.0185 (9)−0.0036 (7)−0.0101 (8)0.0011 (7)
C50.0190 (10)0.0118 (8)0.0171 (9)−0.0053 (7)−0.0092 (8)0.0031 (7)
C60.0221 (11)0.0293 (11)0.0303 (12)0.0028 (8)−0.0137 (9)−0.0038 (9)
C70.0261 (11)0.0155 (9)0.0284 (11)−0.0071 (8)−0.0154 (9)−0.0012 (8)
C80.0212 (11)0.0219 (10)0.0218 (11)−0.0070 (8)−0.0055 (8)0.0044 (8)
O1W—H1W0.877 (17)C4—C51.524 (3)
O1W—H2W0.873 (17)C4—H4A0.9900
N1—C11.485 (2)C4—H4B0.9900
N1—C5i1.524 (2)C5—N1i1.524 (2)
N1—H1N0.89 (3)C5—C81.524 (3)
N1—H2N0.81 (3)C5—C71.524 (3)
N2—C31.269 (3)C6—H6A0.9800
N2—C21.462 (2)C6—H6B0.9800
C1—C21.512 (3)C6—H6C0.9800
C1—H1A0.9900C7—H7A0.9800
C1—H1B0.9900C7—H7B0.9800
C2—H2A0.9900C7—H7C0.9800
C2—H2B0.9900C8—H8A0.9800
C3—C61.504 (3)C8—H8B0.9800
C3—C41.510 (3)C8—H8C0.9800
H1W—O1W—H2W101 (2)C5—C4—H4B107.8
C1—N1—C5i117.45 (15)H4A—C4—H4B107.1
C1—N1—H1N107.0 (15)N1i—C5—C4109.64 (15)
C5i—N1—H1N105.9 (15)N1i—C5—C8109.95 (16)
C1—N1—H2N109.8 (18)C4—C5—C8109.65 (16)
C5i—N1—H2N108.5 (18)N1i—C5—C7105.81 (15)
H1N—N1—H2N108 (2)C4—C5—C7111.51 (16)
C3—N2—C2120.48 (17)C8—C5—C7110.21 (16)
N1—C1—C2109.64 (16)C3—C6—H6A109.5
N1—C1—H1A109.7C3—C6—H6B109.5
C2—C1—H1A109.7H6A—C6—H6B109.5
N1—C1—H1B109.7C3—C6—H6C109.5
C2—C1—H1B109.7H6A—C6—H6C109.5
H1A—C1—H1B108.2H6B—C6—H6C109.5
N2—C2—C1110.39 (16)C5—C7—H7A109.5
N2—C2—H2A109.6C5—C7—H7B109.5
C1—C2—H2A109.6H7A—C7—H7B109.5
N2—C2—H2B109.6C5—C7—H7C109.5
C1—C2—H2B109.6H7A—C7—H7C109.5
H2A—C2—H2B108.1H7B—C7—H7C109.5
N2—C3—C6127.05 (19)C5—C8—H8A109.5
N2—C3—C4119.23 (17)C5—C8—H8B109.5
C6—C3—C4113.71 (17)H8A—C8—H8B109.5
C3—C4—C5118.10 (16)C5—C8—H8C109.5
C3—C4—H4A107.8H8A—C8—H8C109.5
C5—C4—H4A107.8H8B—C8—H8C109.5
C3—C4—H4B107.8
C5i—N1—C1—C2178.16 (16)N2—C3—C4—C523.3 (3)
C3—N2—C2—C1−156.80 (17)C6—C3—C4—C5−157.41 (17)
N1—C1—C2—N269.8 (2)C3—C4—C5—N1i−55.5 (2)
C2—N2—C3—C61.3 (3)C3—C4—C5—C8−176.29 (16)
C2—N2—C3—C4−179.47 (16)C3—C4—C5—C761.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N2i0.89 (3)2.04 (3)2.744 (2)136 (2)
O1W—H1W···I10.88 (2)2.71 (2)3.5753 (18)171 (3)
O1W—H2W···I1ii0.87 (2)2.68 (2)3.5494 (17)176 (3)
N1—H2N···I1ii0.81 (3)3.23 (3)3.6895 (17)119 (2)
N1—H2N···I1iii0.81 (3)2.99 (3)3.7110 (18)149 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯N2i0.89 (3)2.04 (3)2.744 (2)136 (2)
O1W—H1W⋯I10.88 (2)2.71 (2)3.5753 (18)171 (3)
O1W—H2W⋯I1ii0.87 (2)2.68 (2)3.5494 (17)176 (3)
N1—H2N⋯I1ii0.81 (3)3.23 (3)3.6895 (17)119 (2)
N1—H2N⋯I1iii0.81 (3)2.99 (3)3.7110 (18)149 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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