Literature DB >> 22412659

1,4-Dimethyl-piperazin-1-ium 3-hy-droxy-2-naphtho-ate.

Gemma E Craig1, Carla Johnson, Alan R Kennedy.   

Abstract

The reaction of 1,4-dimethyl-piperazine and 3-hy-droxy-2-naphthoic acid gives the title 1:1 salt, C(6)H(15)N(2) (+)·C(11)H(7)O(3) (-), with a singly protonated piperazinium cation. In the crystal, a single N-H⋯O hydrogen bond links the cations and anions into discrete pairs and the aromatic anions stack along the crystallographic a-axis direction. This results in layers of cations and anions alternating along the crystallographic c-axis direction. An intra-molecular O-H⋯O hydrogen bond is also present.

Entities:  

Year:  2012        PMID: 22412659      PMCID: PMC3297856          DOI: 10.1107/S1600536812005375

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general descriptions of the salt selection process in the pharmacy industry, see: Stahl & Wermuth (2002 ▶); Gould (1986 ▶); Serajuddin (2007 ▶). For structures of monoprotonated 1,4-dimethyl­piperazinium, see: Clemente et al. (1999 ▶); Marzotto et al. (2001 ▶). For systematic structural studies of structure–property relationships of salts in a pharmaceutical context, see: Arlin et al. (2011 ▶); Kennedy et al. (2011 ▶). For the Cambridge Structural Database, see: Allen (2002 ▶). For a related aryl carboxyl­ate structure, see: Burchell et al. (2001 ▶).

Experimental

Crystal data

C6H15N2 +·C11H7O3 M = 302.37 Monoclinic, a = 5.8772 (16) Å b = 10.892 (2) Å c = 12.562 (2) Å β = 100.29 (2)° V = 791.2 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.20 × 0.15 × 0.08 mm

Data collection

Oxford Diffraction Xcaliber S diffractometer 7855 measured reflections 2996 independent reflections 1608 reflections with I > 2σ(I) R int = 0.119

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.121 S = 0.83 2996 reflections 203 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812005375/lh5414sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005375/lh5414Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005375/lh5414Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H15N2+·C11H7O3F(000) = 324
Mr = 302.37Dx = 1.269 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1466 reflections
a = 5.8772 (16) Åθ = 2.5–31.3°
b = 10.892 (2) ŵ = 0.09 mm1
c = 12.562 (2) ÅT = 293 K
β = 100.29 (2)°Fragment, colourless
V = 791.2 (3) Å30.20 × 0.15 × 0.08 mm
Z = 2
Oxford Diffraction Xcaliber S diffractometer1608 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.119
Graphite monochromatorθmax = 26.0°, θmin = 2.5°
Detector resolution: 16.0268 pixels mm-1h = −7→7
ω scansk = −13→13
7855 measured reflectionsl = −15→15
2996 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.121w = 1/[σ2(Fo2) + (0.0613P)2] where P = (Fo2 + 2Fc2)/3
S = 0.83(Δ/σ)max < 0.001
2996 reflectionsΔρmax = 0.14 e Å3
203 parametersΔρmin = −0.16 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.046 (5)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4807 (4)0.4173 (2)0.83756 (18)0.0698 (7)
O20.7191 (4)0.2587 (2)0.86723 (18)0.0693 (7)
O30.6220 (4)0.0581 (2)0.7662 (2)0.0713 (7)
H30.69090.10500.81200.107*
N10.0615 (5)0.2188 (2)0.18076 (18)0.0540 (7)
N20.2028 (4)0.0436 (2)0.03575 (18)0.0485 (6)
H20.30790.00040.08340.058*
C10.5324 (6)0.3081 (3)0.8212 (2)0.0499 (8)
C20.3691 (5)0.2334 (2)0.7444 (2)0.0421 (7)
C30.4223 (5)0.1106 (3)0.7177 (2)0.0492 (8)
C40.2712 (6)0.0446 (3)0.6450 (2)0.0577 (8)
H40.3089−0.03530.62860.069*
C50.0600 (6)0.0946 (3)0.5943 (2)0.0511 (8)
C60.0011 (5)0.2159 (3)0.6212 (2)0.0481 (8)
C70.1630 (5)0.2818 (2)0.6959 (2)0.0460 (7)
H70.12750.36180.71280.055*
C8−0.1018 (7)0.0297 (3)0.5177 (3)0.0691 (10)
H8−0.0694−0.05040.49950.083*
C9−0.3021 (7)0.0825 (4)0.4708 (3)0.0819 (12)
H9−0.40350.03870.41920.098*
C10−0.3613 (7)0.2015 (4)0.4978 (3)0.0815 (12)
H10−0.50140.23590.46530.098*
C11−0.2116 (6)0.2662 (3)0.5721 (3)0.0642 (9)
H11−0.25090.34500.59070.077*
C120.2864 (6)0.2257 (3)0.1499 (3)0.0621 (9)
H12A0.39740.18030.20170.074*
H12B0.33620.31070.15140.074*
C130.2821 (6)0.1748 (3)0.0404 (3)0.0582 (9)
H13A0.43570.17930.02240.070*
H13B0.17840.2230−0.01230.070*
C14−0.0210 (5)0.0334 (3)0.0721 (2)0.0559 (8)
H14A−0.0635−0.05240.07510.067*
H14B−0.13960.07450.02080.067*
C15−0.0076 (6)0.0901 (3)0.1817 (2)0.0572 (9)
H15A−0.15730.08430.20360.069*
H15B0.10340.04540.23390.069*
C160.0568 (7)0.2757 (3)0.2852 (3)0.0778 (11)
H16A0.15690.23130.34080.117*
H16B−0.09830.27420.29950.117*
H16C0.10860.35920.28410.117*
C170.1976 (6)−0.0108 (3)−0.0721 (2)0.0694 (10)
H17A0.1472−0.0946−0.07170.104*
H17B0.3498−0.0079−0.08980.104*
H17C0.09260.0347−0.12490.104*
U11U22U33U12U13U23
O10.0622 (15)0.0473 (14)0.0920 (16)0.0018 (12)−0.0080 (11)−0.0174 (12)
O20.0633 (17)0.0680 (15)0.0704 (14)0.0035 (13)−0.0053 (12)−0.0016 (12)
O30.0711 (16)0.0539 (14)0.0857 (16)0.0150 (13)0.0058 (12)0.0047 (12)
N10.0617 (18)0.0417 (15)0.0584 (15)0.0002 (14)0.0099 (12)0.0000 (12)
N20.0493 (15)0.0434 (14)0.0510 (14)0.0044 (12)0.0042 (10)0.0066 (12)
C10.049 (2)0.047 (2)0.0516 (18)−0.0045 (16)0.0016 (15)0.0030 (15)
C20.0478 (18)0.0365 (15)0.0419 (15)−0.0003 (14)0.0074 (13)0.0016 (13)
C30.055 (2)0.0392 (17)0.0534 (17)0.0029 (15)0.0085 (15)0.0040 (15)
C40.079 (2)0.0358 (16)0.062 (2)0.0007 (18)0.0225 (17)−0.0012 (15)
C50.066 (2)0.0445 (19)0.0440 (16)−0.0126 (16)0.0121 (15)−0.0028 (14)
C60.0483 (19)0.0502 (19)0.0452 (15)−0.0061 (15)0.0069 (14)0.0008 (15)
C70.057 (2)0.0347 (15)0.0462 (15)0.0011 (15)0.0089 (14)−0.0039 (12)
C80.086 (3)0.062 (2)0.059 (2)−0.021 (2)0.0122 (19)−0.0126 (18)
C90.078 (3)0.101 (3)0.061 (2)−0.034 (3)−0.0001 (19)−0.008 (2)
C100.068 (3)0.105 (3)0.065 (2)−0.015 (2)−0.0048 (19)0.013 (2)
C110.061 (2)0.065 (2)0.0631 (19)0.0012 (19)0.0015 (16)0.0026 (17)
C120.065 (2)0.0412 (18)0.078 (2)−0.0092 (17)0.0058 (17)0.0020 (17)
C130.063 (2)0.0390 (17)0.074 (2)−0.0047 (16)0.0165 (16)0.0120 (15)
C140.0497 (19)0.0503 (18)0.067 (2)−0.0031 (15)0.0078 (15)0.0032 (16)
C150.064 (2)0.050 (2)0.0585 (19)−0.0035 (16)0.0110 (16)0.0051 (15)
C160.098 (3)0.067 (2)0.067 (2)0.004 (2)0.0124 (19)−0.0089 (18)
C170.082 (3)0.068 (2)0.058 (2)0.013 (2)0.0097 (17)0.0025 (18)
O1—C11.253 (4)C8—H80.9300
O2—C11.265 (4)C9—C101.399 (6)
O3—C31.349 (4)C9—H90.9300
O3—H30.8200C10—C111.360 (5)
N1—C121.445 (4)C10—H100.9300
N1—C161.455 (4)C11—H110.9300
N1—C151.460 (4)C12—C131.479 (5)
N2—C141.472 (4)C12—H12A0.9700
N2—C171.474 (4)C12—H12B0.9700
N2—C131.501 (4)C13—H13A0.9700
N2—H20.9100C13—H13B0.9700
C1—C21.479 (4)C14—C151.497 (4)
C2—C71.361 (4)C14—H14A0.9700
C2—C31.427 (4)C14—H14B0.9700
C3—C41.360 (4)C15—H15A0.9700
C4—C51.400 (4)C15—H15B0.9700
C4—H40.9300C16—H16A0.9600
C5—C81.416 (4)C16—H16B0.9600
C5—C61.421 (4)C16—H16C0.9600
C6—C111.403 (4)C17—H17A0.9600
C6—C71.408 (4)C17—H17B0.9600
C7—H70.9300C17—H17C0.9600
C8—C91.348 (5)
C3—O3—H3109.5C10—C11—C6121.1 (4)
C12—N1—C16112.7 (3)C10—C11—H11119.5
C12—N1—C15108.7 (2)C6—C11—H11119.5
C16—N1—C15110.6 (3)N1—C12—C13111.5 (3)
C14—N2—C17112.5 (2)N1—C12—H12A109.3
C14—N2—C13110.4 (2)C13—C12—H12A109.3
C17—N2—C13111.9 (2)N1—C12—H12B109.3
C14—N2—H2107.2C13—C12—H12B109.3
C17—N2—H2107.2H12A—C12—H12B108.0
C13—N2—H2107.2C12—C13—N2110.3 (3)
O1—C1—O2123.0 (3)C12—C13—H13A109.6
O1—C1—C2118.8 (3)N2—C13—H13A109.6
O2—C1—C2118.2 (3)C12—C13—H13B109.6
C7—C2—C3118.2 (3)N2—C13—H13B109.6
C7—C2—C1120.1 (3)H13A—C13—H13B108.1
C3—C2—C1121.7 (3)N2—C14—C15110.6 (2)
O3—C3—C4119.4 (3)N2—C14—H14A109.5
O3—C3—C2120.1 (3)C15—C14—H14A109.5
C4—C3—C2120.6 (3)N2—C14—H14B109.5
C3—C4—C5121.3 (3)C15—C14—H14B109.5
C3—C4—H4119.4H14A—C14—H14B108.1
C5—C4—H4119.4N1—C15—C14111.0 (2)
C4—C5—C8123.2 (3)N1—C15—H15A109.4
C4—C5—C6119.2 (3)C14—C15—H15A109.4
C8—C5—C6117.6 (3)N1—C15—H15B109.4
C11—C6—C7122.5 (3)C14—C15—H15B109.4
C11—C6—C5119.6 (3)H15A—C15—H15B108.0
C7—C6—C5117.9 (3)N1—C16—H16A109.5
C2—C7—C6122.8 (3)N1—C16—H16B109.5
C2—C7—H7118.6H16A—C16—H16B109.5
C6—C7—H7118.6N1—C16—H16C109.5
C9—C8—C5120.8 (4)H16A—C16—H16C109.5
C9—C8—H8119.6H16B—C16—H16C109.5
C5—C8—H8119.6N2—C17—H17A109.5
C8—C9—C10121.7 (3)N2—C17—H17B109.5
C8—C9—H9119.2H17A—C17—H17B109.5
C10—C9—H9119.2N2—C17—H17C109.5
C11—C10—C9119.2 (4)H17A—C17—H17C109.5
C11—C10—H10120.4H17B—C17—H17C109.5
C9—C10—H10120.4
O1—C1—C2—C7−2.5 (5)C5—C6—C7—C2−1.4 (4)
O2—C1—C2—C7177.8 (3)C4—C5—C8—C9−179.6 (3)
O1—C1—C2—C3176.7 (3)C6—C5—C8—C91.2 (5)
O2—C1—C2—C3−3.0 (4)C5—C8—C9—C10−1.8 (6)
C7—C2—C3—O3−178.2 (3)C8—C9—C10—C110.9 (6)
C1—C2—C3—O32.6 (4)C9—C10—C11—C60.5 (6)
C7—C2—C3—C40.6 (4)C7—C6—C11—C10178.0 (3)
C1—C2—C3—C4−178.6 (3)C5—C6—C11—C10−1.0 (5)
O3—C3—C4—C5178.8 (3)C16—N1—C12—C13−176.1 (3)
C2—C3—C4—C5−0.1 (4)C15—N1—C12—C1360.9 (3)
C3—C4—C5—C8179.6 (3)N1—C12—C13—N2−58.3 (4)
C3—C4—C5—C6−1.2 (4)C14—N2—C13—C1254.3 (3)
C4—C5—C6—C11−179.0 (3)C17—N2—C13—C12−179.6 (3)
C8—C5—C6—C110.2 (4)C17—N2—C14—C15−179.8 (3)
C4—C5—C6—C71.9 (4)C13—N2—C14—C15−54.0 (3)
C8—C5—C6—C7−178.9 (3)C12—N1—C15—C14−60.2 (3)
C3—C2—C7—C60.1 (4)C16—N1—C15—C14175.6 (3)
C1—C2—C7—C6179.3 (3)N2—C14—C15—N157.8 (3)
C11—C6—C7—C2179.6 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.821.812.541 (3)148
N2—H2···O1i0.911.712.613 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.821.812.541 (3)148
N2—H2⋯O1i0.911.712.613 (3)174

Symmetry code: (i) .

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