| Literature DB >> 22719463 |
Juan Zheng1, Wen-Juan Li, Manman Song, Yan Xu.
Abstract
In the crystal structure of the title compound, C(9)H(9)N(3)O, adjacent mol-ecules are linked through N-H⋯N hydrogen bonds into a three-dimensional network.Entities:
Year: 2012 PMID: 22719463 PMCID: PMC3379265 DOI: 10.1107/S1600536812019617
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9N3O | |
| Monoclinic, | Mo |
| Cell parameters from 1122 reflections | |
| θ = 3.3–26.3° | |
| µ = 0.09 mm−1 | |
| β = 108.012 (19)° | |
| Prism, yellow | |
| 0.38 × 0.35 × 0.30 mm |
| Rigaku Saturn diffractometer | 1800 independent reflections |
| Radiation source: fine-focus sealed tube | 1313 reflections with |
| Graphite monochromator | |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 26.4°, θmin = 3.3° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 3809 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1800 reflections | (Δ/σ)max < 0.001 |
| 127 parameters | Δρmax = 0.20 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.00011 (9) | 0.21279 (17) | 0.19008 (10) | 0.0417 (3) | |
| N1 | −0.06440 (12) | −0.1327 (2) | 0.19144 (13) | 0.0516 (4) | |
| N2 | −0.13933 (12) | 0.0146 (2) | 0.22353 (14) | 0.0497 (4) | |
| N3 | −0.13387 (15) | 0.4123 (3) | 0.24629 (15) | 0.0572 (5) | |
| C1 | 0.29096 (15) | −0.2138 (3) | 0.05483 (15) | 0.0515 (5) | |
| C2 | 0.19911 (16) | −0.3566 (3) | 0.04961 (15) | 0.0537 (5) | |
| H2 | 0.1975 | −0.4991 | 0.0191 | 0.064* | |
| C3 | 0.11020 (16) | −0.2923 (3) | 0.08861 (15) | 0.0485 (5) | |
| H3 | 0.0500 | −0.3917 | 0.0847 | 0.058* | |
| C4 | 0.11017 (13) | −0.0803 (3) | 0.13353 (14) | 0.0395 (4) | |
| C5 | 0.20195 (15) | 0.0649 (3) | 0.14061 (16) | 0.0497 (5) | |
| H5 | 0.2036 | 0.2073 | 0.1712 | 0.060* | |
| C6 | 0.29100 (15) | −0.0041 (3) | 0.10172 (17) | 0.0568 (5) | |
| H6 | 0.3524 | 0.0933 | 0.1073 | 0.068* | |
| C7 | 0.01433 (13) | −0.0122 (3) | 0.17222 (14) | 0.0388 (4) | |
| C8 | −0.09732 (14) | 0.2145 (3) | 0.22099 (15) | 0.0411 (4) | |
| C9 | 0.38709 (18) | −0.2859 (4) | 0.0109 (2) | 0.0749 (7) | |
| H9A | 0.4075 | −0.4395 | 0.0312 | 0.112* | |
| H9B | 0.4533 | −0.1910 | 0.0410 | 0.112* | |
| H9C | 0.3617 | −0.2730 | −0.0676 | 0.112* | |
| H3A | −0.1032 (18) | 0.535 (4) | 0.2273 (17) | 0.068 (6)* | |
| H3B | −0.2065 (17) | 0.421 (3) | 0.2559 (16) | 0.062 (6)* |
| O1 | 0.0408 (6) | 0.0300 (6) | 0.0602 (8) | −0.0006 (5) | 0.0243 (6) | 0.0001 (5) |
| N1 | 0.0544 (9) | 0.0322 (8) | 0.0790 (11) | −0.0021 (6) | 0.0363 (8) | −0.0008 (7) |
| N2 | 0.0521 (8) | 0.0319 (8) | 0.0768 (11) | −0.0014 (6) | 0.0372 (8) | 0.0020 (7) |
| N3 | 0.0563 (10) | 0.0337 (9) | 0.0968 (14) | 0.0003 (7) | 0.0460 (10) | −0.0007 (8) |
| C1 | 0.0468 (10) | 0.0584 (12) | 0.0530 (11) | 0.0107 (9) | 0.0209 (9) | 0.0035 (9) |
| C2 | 0.0652 (12) | 0.0437 (10) | 0.0584 (12) | 0.0078 (9) | 0.0279 (10) | −0.0056 (9) |
| C3 | 0.0538 (10) | 0.0393 (9) | 0.0573 (11) | −0.0033 (8) | 0.0244 (9) | −0.0043 (8) |
| C4 | 0.0400 (8) | 0.0351 (9) | 0.0447 (10) | 0.0027 (7) | 0.0148 (7) | 0.0025 (7) |
| C5 | 0.0478 (9) | 0.0390 (10) | 0.0654 (12) | −0.0004 (8) | 0.0222 (9) | −0.0041 (9) |
| C6 | 0.0439 (10) | 0.0566 (12) | 0.0758 (14) | −0.0018 (9) | 0.0269 (10) | 0.0005 (10) |
| C7 | 0.0431 (9) | 0.0279 (8) | 0.0472 (10) | 0.0011 (7) | 0.0165 (8) | 0.0016 (7) |
| C8 | 0.0394 (8) | 0.0348 (9) | 0.0544 (11) | −0.0004 (7) | 0.0223 (8) | 0.0020 (8) |
| C9 | 0.0596 (12) | 0.0929 (17) | 0.0811 (16) | 0.0168 (11) | 0.0350 (12) | −0.0082 (13) |
| O1—C8 | 1.3608 (19) | C2—H2 | 0.9300 |
| O1—C7 | 1.3754 (18) | C3—C4 | 1.385 (2) |
| N1—C7 | 1.279 (2) | C3—H3 | 0.9300 |
| N1—N2 | 1.4129 (19) | C4—C5 | 1.391 (2) |
| N2—C8 | 1.296 (2) | C4—C7 | 1.458 (2) |
| N3—C8 | 1.331 (2) | C5—C6 | 1.387 (2) |
| N3—H3A | 0.88 (2) | C5—H5 | 0.9300 |
| N3—H3B | 0.93 (2) | C6—H6 | 0.9300 |
| C1—C6 | 1.382 (3) | C9—H9A | 0.9600 |
| C1—C2 | 1.388 (3) | C9—H9B | 0.9600 |
| C1—C9 | 1.509 (3) | C9—H9C | 0.9600 |
| C2—C3 | 1.378 (2) | ||
| C8—O1—C7 | 102.79 (11) | C6—C5—C4 | 119.58 (16) |
| C7—N1—N2 | 107.39 (13) | C6—C5—H5 | 120.2 |
| C8—N2—N1 | 105.34 (13) | C4—C5—H5 | 120.2 |
| C8—N3—H3A | 117.2 (13) | C1—C6—C5 | 121.82 (17) |
| C8—N3—H3B | 119.0 (11) | C1—C6—H6 | 119.1 |
| H3A—N3—H3B | 119.1 (17) | C5—C6—H6 | 119.1 |
| C6—C1—C2 | 117.61 (16) | N1—C7—O1 | 111.77 (14) |
| C6—C1—C9 | 121.48 (18) | N1—C7—C4 | 129.48 (15) |
| C2—C1—C9 | 120.92 (18) | O1—C7—C4 | 118.74 (13) |
| C3—C2—C1 | 121.55 (17) | N2—C8—N3 | 129.62 (16) |
| C3—C2—H2 | 119.2 | N2—C8—O1 | 112.70 (14) |
| C1—C2—H2 | 119.2 | N3—C8—O1 | 117.65 (14) |
| C2—C3—C4 | 120.28 (17) | C1—C9—H9A | 109.5 |
| C2—C3—H3 | 119.9 | C1—C9—H9B | 109.5 |
| C4—C3—H3 | 119.9 | H9A—C9—H9B | 109.5 |
| C3—C4—C5 | 119.15 (16) | C1—C9—H9C | 109.5 |
| C3—C4—C7 | 119.79 (15) | H9A—C9—H9C | 109.5 |
| C5—C4—C7 | 121.06 (15) | H9B—C9—H9C | 109.5 |
| C7—N1—N2—C8 | −0.3 (2) | N2—N1—C7—C4 | −177.86 (16) |
| C6—C1—C2—C3 | 0.6 (3) | C8—O1—C7—N1 | −0.76 (19) |
| C9—C1—C2—C3 | −179.45 (18) | C8—O1—C7—C4 | 177.94 (14) |
| C1—C2—C3—C4 | 0.6 (3) | C3—C4—C7—N1 | 14.9 (3) |
| C2—C3—C4—C5 | −1.2 (3) | C5—C4—C7—N1 | −165.33 (19) |
| C2—C3—C4—C7 | 178.60 (16) | C3—C4—C7—O1 | −163.57 (15) |
| C3—C4—C5—C6 | 0.6 (3) | C5—C4—C7—O1 | 16.2 (2) |
| C7—C4—C5—C6 | −179.16 (17) | N1—N2—C8—N3 | −178.37 (19) |
| C2—C1—C6—C5 | −1.2 (3) | N1—N2—C8—O1 | −0.2 (2) |
| C9—C1—C6—C5 | 178.88 (19) | C7—O1—C8—N2 | 0.58 (19) |
| C4—C5—C6—C1 | 0.6 (3) | C7—O1—C8—N3 | 178.98 (16) |
| N2—N1—C7—O1 | 0.7 (2) |
| H··· | ||||
| N3—H3 | 0.88 (2) | 2.11 (2) | 2.979 (2) | 165.7 (19) |
| N3—H3 | 0.93 (2) | 2.05 (2) | 2.964 (2) | 167.6 (16) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.88 (2) | 2.11 (2) | 2.979 (2) | 165.7 (19) |
| N3—H3 | 0.93 (2) | 2.05 (2) | 2.964 (2) | 167.6 (16) |
Symmetry codes: (i) ; (ii) .