Literature DB >> 22719463

5-(4-Methyl-phen-yl)-1,3,4-oxadiazol-2-amine.

Juan Zheng1, Wen-Juan Li, Manman Song, Yan Xu.   

Abstract

In the crystal structure of the title compound, C(9)H(9)N(3)O, adjacent mol-ecules are linked through N-H⋯N hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22719463      PMCID: PMC3379265          DOI: 10.1107/S1600536812019617

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 1,3,4-oxadiazole derivatives, see: Lv et al. (2010 ▶); Bachwani & Sharma (2011 ▶); Padmavathi et al. (2009 ▶); Tang et al. (2007 ▶); Xue et al. (2007 ▶).

Experimental

Crystal data

C9H9N3O M = 175.19 Monoclinic, a = 12.161 (2) Å b = 5.9374 (3) Å c = 12.8282 (15) Å β = 108.012 (19)° V = 880.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 291 K 0.38 × 0.35 × 0.30 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2006 ▶) T min = 0.966, T max = 0.973 3809 measured reflections 1800 independent reflections 1313 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.124 S = 1.03 1800 reflections 127 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019617/zj2066sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019617/zj2066Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019617/zj2066Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N3OF(000) = 368
Mr = 175.19Dx = 1.321 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 12.161 (2) ÅCell parameters from 1122 reflections
b = 5.9374 (3) Åθ = 3.3–26.3°
c = 12.8282 (15) ŵ = 0.09 mm1
β = 108.012 (19)°T = 291 K
V = 880.9 (2) Å3Prism, yellow
Z = 40.38 × 0.35 × 0.30 mm
Rigaku Saturn diffractometer1800 independent reflections
Radiation source: fine-focus sealed tube1313 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
Detector resolution: 28.5714 pixels mm-1θmax = 26.4°, θmin = 3.3°
ω scansh = −15→15
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2006)k = −7→6
Tmin = 0.966, Tmax = 0.973l = −16→15
3809 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0612P)2 + 0.0867P] where P = (Fo2 + 2Fc2)/3
1800 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.00011 (9)0.21279 (17)0.19008 (10)0.0417 (3)
N1−0.06440 (12)−0.1327 (2)0.19144 (13)0.0516 (4)
N2−0.13933 (12)0.0146 (2)0.22353 (14)0.0497 (4)
N3−0.13387 (15)0.4123 (3)0.24629 (15)0.0572 (5)
C10.29096 (15)−0.2138 (3)0.05483 (15)0.0515 (5)
C20.19911 (16)−0.3566 (3)0.04961 (15)0.0537 (5)
H20.1975−0.49910.01910.064*
C30.11020 (16)−0.2923 (3)0.08861 (15)0.0485 (5)
H30.0500−0.39170.08470.058*
C40.11017 (13)−0.0803 (3)0.13353 (14)0.0395 (4)
C50.20195 (15)0.0649 (3)0.14061 (16)0.0497 (5)
H50.20360.20730.17120.060*
C60.29100 (15)−0.0041 (3)0.10172 (17)0.0568 (5)
H60.35240.09330.10730.068*
C70.01433 (13)−0.0122 (3)0.17222 (14)0.0388 (4)
C8−0.09732 (14)0.2145 (3)0.22099 (15)0.0411 (4)
C90.38709 (18)−0.2859 (4)0.0109 (2)0.0749 (7)
H9A0.4075−0.43950.03120.112*
H9B0.4533−0.19100.04100.112*
H9C0.3617−0.2730−0.06760.112*
H3A−0.1032 (18)0.535 (4)0.2273 (17)0.068 (6)*
H3B−0.2065 (17)0.421 (3)0.2559 (16)0.062 (6)*
U11U22U33U12U13U23
O10.0408 (6)0.0300 (6)0.0602 (8)−0.0006 (5)0.0243 (6)0.0001 (5)
N10.0544 (9)0.0322 (8)0.0790 (11)−0.0021 (6)0.0363 (8)−0.0008 (7)
N20.0521 (8)0.0319 (8)0.0768 (11)−0.0014 (6)0.0372 (8)0.0020 (7)
N30.0563 (10)0.0337 (9)0.0968 (14)0.0003 (7)0.0460 (10)−0.0007 (8)
C10.0468 (10)0.0584 (12)0.0530 (11)0.0107 (9)0.0209 (9)0.0035 (9)
C20.0652 (12)0.0437 (10)0.0584 (12)0.0078 (9)0.0279 (10)−0.0056 (9)
C30.0538 (10)0.0393 (9)0.0573 (11)−0.0033 (8)0.0244 (9)−0.0043 (8)
C40.0400 (8)0.0351 (9)0.0447 (10)0.0027 (7)0.0148 (7)0.0025 (7)
C50.0478 (9)0.0390 (10)0.0654 (12)−0.0004 (8)0.0222 (9)−0.0041 (9)
C60.0439 (10)0.0566 (12)0.0758 (14)−0.0018 (9)0.0269 (10)0.0005 (10)
C70.0431 (9)0.0279 (8)0.0472 (10)0.0011 (7)0.0165 (8)0.0016 (7)
C80.0394 (8)0.0348 (9)0.0544 (11)−0.0004 (7)0.0223 (8)0.0020 (8)
C90.0596 (12)0.0929 (17)0.0811 (16)0.0168 (11)0.0350 (12)−0.0082 (13)
O1—C81.3608 (19)C2—H20.9300
O1—C71.3754 (18)C3—C41.385 (2)
N1—C71.279 (2)C3—H30.9300
N1—N21.4129 (19)C4—C51.391 (2)
N2—C81.296 (2)C4—C71.458 (2)
N3—C81.331 (2)C5—C61.387 (2)
N3—H3A0.88 (2)C5—H50.9300
N3—H3B0.93 (2)C6—H60.9300
C1—C61.382 (3)C9—H9A0.9600
C1—C21.388 (3)C9—H9B0.9600
C1—C91.509 (3)C9—H9C0.9600
C2—C31.378 (2)
C8—O1—C7102.79 (11)C6—C5—C4119.58 (16)
C7—N1—N2107.39 (13)C6—C5—H5120.2
C8—N2—N1105.34 (13)C4—C5—H5120.2
C8—N3—H3A117.2 (13)C1—C6—C5121.82 (17)
C8—N3—H3B119.0 (11)C1—C6—H6119.1
H3A—N3—H3B119.1 (17)C5—C6—H6119.1
C6—C1—C2117.61 (16)N1—C7—O1111.77 (14)
C6—C1—C9121.48 (18)N1—C7—C4129.48 (15)
C2—C1—C9120.92 (18)O1—C7—C4118.74 (13)
C3—C2—C1121.55 (17)N2—C8—N3129.62 (16)
C3—C2—H2119.2N2—C8—O1112.70 (14)
C1—C2—H2119.2N3—C8—O1117.65 (14)
C2—C3—C4120.28 (17)C1—C9—H9A109.5
C2—C3—H3119.9C1—C9—H9B109.5
C4—C3—H3119.9H9A—C9—H9B109.5
C3—C4—C5119.15 (16)C1—C9—H9C109.5
C3—C4—C7119.79 (15)H9A—C9—H9C109.5
C5—C4—C7121.06 (15)H9B—C9—H9C109.5
C7—N1—N2—C8−0.3 (2)N2—N1—C7—C4−177.86 (16)
C6—C1—C2—C30.6 (3)C8—O1—C7—N1−0.76 (19)
C9—C1—C2—C3−179.45 (18)C8—O1—C7—C4177.94 (14)
C1—C2—C3—C40.6 (3)C3—C4—C7—N114.9 (3)
C2—C3—C4—C5−1.2 (3)C5—C4—C7—N1−165.33 (19)
C2—C3—C4—C7178.60 (16)C3—C4—C7—O1−163.57 (15)
C3—C4—C5—C60.6 (3)C5—C4—C7—O116.2 (2)
C7—C4—C5—C6−179.16 (17)N1—N2—C8—N3−178.37 (19)
C2—C1—C6—C5−1.2 (3)N1—N2—C8—O1−0.2 (2)
C9—C1—C6—C5178.88 (19)C7—O1—C8—N20.58 (19)
C4—C5—C6—C10.6 (3)C7—O1—C8—N3178.98 (16)
N2—N1—C7—O10.7 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N1i0.88 (2)2.11 (2)2.979 (2)165.7 (19)
N3—H3B···N2ii0.93 (2)2.05 (2)2.964 (2)167.6 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N1i0.88 (2)2.11 (2)2.979 (2)165.7 (19)
N3—H3B⋯N2ii0.93 (2)2.05 (2)2.964 (2)167.6 (16)

Symmetry codes: (i) ; (ii) .

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Authors:  V Padmavathi; G Sudhakar Reddy; A Padmaja; P Kondaiah
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