Literature DB >> 22719450

2-Cyano-1-methyl-pyridinium nitrate.

Lynn V Koplitz, Joel T Mague, Michael N Kammer, Cameron A McCormick, Heather E Renfro, David J Vumbaco.   

Abstract

In the title compound, C(7)H(7)N(2) (+)·NO(3) (-), all atoms except the methyl H atoms lie on a crystallographic mirror plane. The inter-layer distance, including that between aligned N atoms from alternating cations and anions in adjacent layers, is exceptionally short at 3.055 (1) Å. Two-dimensional C-H⋯O hydrogen-bonded networks link cations to anions, while C-H⋯N inter-actions link cations within each layer. Anion-π inter-actions with the cations assist in binding the layers together.

Entities:  

Year:  2012        PMID: 22719450      PMCID: PMC3379252          DOI: 10.1107/S1600536812019460

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 2-cyano­anilinium nitrate, see: Cui & Wen (2008 ▶). For the structures of other 2- and 3-cyano­anilinium salts, see: Zhang (2009 ▶); Wang (2009a ▶,b ▶); Wen (2008 ▶). For previous work on cyano-N-methyl­pyridinium salts, see: Koplitz et al. (2003 ▶); Mague et al. (2005 ▶). For a discussion of anion–π inter­actions, see: Frontera et al. (2011 ▶).

Experimental

Crystal data

C7H7N2 +·NO3 M = 181.16 Orthorhombic, a = 16.302 (3) Å b = 6.1012 (10) Å c = 8.0318 (13) Å V = 798.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 160 K 0.22 × 0.14 × 0.13 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (TWINABS; Sheldrick, 2009 ▶) T min = 0.652, T max = 0.985 25942 measured reflections 1143 independent reflections 1005 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.156 S = 1.14 1143 reflections 80 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.78 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT and CELL_NOW (Sheldrick, 2008b ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008a ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008a ▶); molecular graphics: SHELXTL (Sheldrick, 2008a ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812019460/hb6770sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019460/hb6770Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019460/hb6770Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H7N2+·NO3F(000) = 376
Mr = 181.16Dx = 1.506 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 1462 reflections
a = 16.302 (3) Åθ = 2.5–28.1°
b = 6.1012 (10) ŵ = 0.12 mm1
c = 8.0318 (13) ÅT = 160 K
V = 798.9 (2) Å3Block, colourless
Z = 40.22 × 0.14 × 0.13 mm
Bruker SMART APEX CCD [or Bruker APEXII CCD?]diffractometer1143 independent reflections
Radiation source: fine-focus sealed tube1005 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.069
φ and ω scansθmax = 29.1°, θmin = 2.5°
Absorption correction: multi-scan (TWINABS; Sheldrick, 2009)h = 0→22
Tmin = 0.652, Tmax = 0.985k = 0→8
25942 measured reflectionsl = 0→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.0984P)2 + 0.1829P] where P = (Fo2 + 2Fc2)/3
1143 reflections(Δ/σ)max < 0.001
80 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.78 e Å3
Experimental. The diffraction data were obtained from 3 sets of 400 frames, each of width 0.5 °. in omega, colllected at phi = 0.00, 90.00 and 180.00 °. and 2 sets of 800 frames, each of width 0.45 ° in phi, collected at omega = -30.00 and 210.00 °. The scan time was sec/frame. Analysis of 576 reflections having I/σ(I) > 15 and chosen from the full data set with CELL_NOW (Sheldrick, 2008b) showed the crystal to belong to the orthorhombic system and to be twinned by a 180 ° rotation about c. The raw data were processed using the multi-component version of SAINT under control of the two-component orientation file generated by CELL_NOW.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.39751 (10)0.25000.27067 (17)0.0183 (4)
N20.38257 (11)0.2500−0.1590 (2)0.0370 (5)
C10.37563 (12)0.25000.4325 (2)0.0217 (4)
H10.41680.25000.51630.026*
C20.29366 (12)0.25000.4776 (2)0.0241 (4)
H20.27880.25000.59200.029*
C30.23350 (12)0.25000.3566 (2)0.0226 (4)
H30.17720.25000.38700.027*
C40.25634 (11)0.25000.1886 (2)0.0214 (4)
H40.21600.25000.10330.026*
C50.33831 (11)0.25000.1499 (2)0.0192 (4)
C60.36487 (12)0.2500−0.0215 (2)0.0242 (4)
C70.48583 (12)0.25000.2249 (2)0.0249 (4)
H7A0.49450.15320.12920.037*0.50
H7B0.51840.19750.31940.037*0.50
H7C0.50290.39930.19610.037*0.50
N30.11091 (10)0.25000.78367 (18)0.0212 (4)
O10.18594 (9)0.25000.81475 (19)0.0292 (4)
O20.08669 (10)0.25000.63510 (17)0.0329 (4)
O30.06020 (10)0.25000.9001 (2)0.0383 (4)
U11U22U33U12U13U23
N10.0241 (7)0.0219 (7)0.0090 (7)0.000−0.0007 (5)0.000
N20.0305 (10)0.0696 (14)0.0110 (8)0.000−0.0001 (7)0.000
C10.0325 (9)0.0237 (8)0.0090 (8)0.000−0.0007 (7)0.000
C20.0378 (11)0.0254 (9)0.0092 (8)0.0000.0048 (7)0.000
C30.0260 (9)0.0262 (8)0.0154 (8)0.0000.0050 (6)0.000
C40.0261 (9)0.0253 (9)0.0127 (8)0.000−0.0017 (6)0.000
C50.0263 (9)0.0232 (8)0.0081 (8)0.000−0.0019 (6)0.000
C60.0241 (8)0.0368 (10)0.0118 (8)0.000−0.0005 (6)0.000
C70.0233 (9)0.0353 (10)0.0161 (9)0.000−0.0005 (6)0.000
N30.0283 (8)0.0231 (7)0.0123 (7)0.0000.0030 (5)0.000
O10.0271 (8)0.0407 (8)0.0198 (7)0.000−0.0006 (5)0.000
O20.0369 (9)0.0490 (9)0.0128 (7)0.000−0.0044 (5)0.000
O30.0383 (9)0.0558 (10)0.0207 (8)0.0000.0152 (6)0.000
N1—C11.348 (2)C4—C51.372 (3)
N1—C51.368 (2)C4—H40.9500
N1—C71.486 (2)C5—C61.443 (2)
N2—C61.142 (2)C7—H7A0.9800
C1—C21.384 (3)C7—H7B0.9800
C1—H10.9500C7—H7C0.9800
C2—C31.381 (3)N3—O31.248 (2)
C2—H20.9500N3—O11.248 (2)
C3—C41.399 (2)N3—O21.257 (2)
C3—H30.9500
C1—N1—C5119.79 (16)C3—C4—H4120.7
C1—N1—C7119.66 (15)N1—C5—C4121.77 (17)
C5—N1—C7120.55 (15)N1—C5—C6117.69 (16)
N1—C1—C2120.52 (17)C4—C5—C6120.55 (16)
N1—C1—H1119.7N2—C6—C5177.2 (2)
C2—C1—H1119.7N1—C7—H7A109.5
C3—C2—C1120.08 (16)N1—C7—H7B109.5
C3—C2—H2120.0H7A—C7—H7B109.5
C1—C2—H2120.0N1—C7—H7C109.5
C2—C3—C4119.32 (18)H7A—C7—H7C109.5
C2—C3—H3120.3H7B—C7—H7C109.5
C4—C3—H3120.3O3—N3—O1119.95 (16)
C5—C4—C3118.52 (17)O3—N3—O2120.21 (17)
C5—C4—H4120.7O1—N3—O2119.84 (16)
D—H···AD—HH···AD···AD—H···A
C2—H2···O10.952.343.227 (2)155
C3—H3···O20.952.483.276 (2)141
C4—H4···O1i0.952.373.215 (2)148
C7—H7B···O3ii0.982.383.247 (2)148
C7—H7A···O2iii0.982.673.326 (2)125
C7—H7C···O2iv0.982.643.3503 (11)130
C1—H1···N2v0.952.673.259 (2)123
C2—H2···N2v0.952.623.283 (2)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O10.952.343.227 (2)155
C3—H3⋯O20.952.483.276 (2)141
C4—H4⋯O1i0.952.373.215 (2)148
C7—H7B⋯O3ii0.982.383.247 (2)148
C7—H7A⋯O2iii0.982.673.326 (2)125
C7—H7C⋯O2iv0.982.643.3503 (11)130
C1—H1⋯N2v0.952.673.259 (2)123
C2—H2⋯N2v0.952.623.283 (2)125

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Putting anion-π interactions into perspective.

Authors:  Antonio Frontera; Patrick Gamez; Mark Mascal; Tiddo J Mooibroek; Jan Reedijk
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-16       Impact factor: 15.336

3.  3-Cyano-anilinium nitrate.

Authors:  Bo Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09

4.  2-Cyano-anilinium nitrate.

Authors:  Li-Jing Cui; Xiao-Chun Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

5.  2-Cyano-anilinium bromide.

Authors:  Li Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09

6.  3-Cyano-anilinium bromide.

Authors:  Bo Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09

7.  3-Cyano-anilinium chloride.

Authors:  Xiao-Chun Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12
  7 in total

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