Literature DB >> 22719374

Poly[diaqua-(μ(5)-pyridine-3,5-dicarboxyl-ato)strontium].

Dan Li, Chaowen Duan.   

Abstract

In the structure of the title compound, [Sr(n class="Chemical">C(7)H(3)NO(4))(H(2)O)(2)](n), the Sr(II) cation is eight-coordinated in form of a distorted dodeca-hedron by two water O atoms and by five O atoms and one N atom from five pyridine-3,5-dicarboxyl-ate anions. The bridging mode of the anions leads to the formation of a layered network parallel to (100). O-H⋯O hydrogen bonding between the coordinating water mol-ecules and the carboxyl-ate groups of adjacent layers consolidates the crystal packing. Weak C-H⋯O inter-actions are also observed.

Entities:  

Year:  2012        PMID: 22719374      PMCID: PMC3379176          DOI: 10.1107/S1600536812023379

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures with pyridine-3,5-dicarboxyl­ato ligands, see: Aghabozorg et al. (2008 ▶); Dang et al. (2010 ▶); Du et al. (2009 ▶); Lv et al. (2010 ▶); Wu et al. (2008 ▶); Yao et al. (2010 ▶).

Experimental

Crystal data

[Sr(n class="CellLine">C7H3NO4)(H2O)2] M = 288.76 Triclinic, a = 7.9098 (4) Å b = 8.0028 (4) Å c = 8.0864 (5) Å α = 88.620 (2)° β = 71.270 (2)° γ = 72.030 (2)° V = 459.52 (4) Å3 Z = 2 Mo Kα radiation μ = 5.88 mm−1 T = 293 K 0.30 × 0.17 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.272, T max = 0.453 8322 measured reflections 2305 independent reflections 2226 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.017 wR(F 2) = 0.046 S = 1.08 2305 reflections 136 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.51 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAIn class="Chemical">NT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2012 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812023379/wm2630sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023379/wm2630Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sr(C7H3NO4)(H2O)2]Z = 2
Mr = 288.76F(000) = 284
Triclinic, P1Dx = 2.087 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9098 (4) ÅCell parameters from 3510 reflections
b = 8.0028 (4) Åθ = 2.7–25.3°
c = 8.0864 (5) ŵ = 5.88 mm1
α = 88.620 (2)°T = 293 K
β = 71.270 (2)°Block, colourless
γ = 72.030 (2)°0.30 × 0.17 × 0.16 mm
V = 459.52 (4) Å3
Bruker APEXII CCD diffractometer2305 independent reflections
Radiation source: fine-focus sealed tube2226 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
φ and ω scansθmax = 28.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.272, Tmax = 0.453k = −10→10
8322 measured reflectionsl = −9→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.017Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.046H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0269P)2 + 0.1887P] where P = (Fo2 + 2Fc2)/3
2305 reflections(Δ/σ)max = 0.001
136 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sr10.685514 (18)0.654700 (16)0.373999 (17)0.01302 (5)
O10.53412 (17)0.40183 (16)0.33347 (15)0.0220 (2)
O30.63315 (17)0.12206 (15)−0.40559 (15)0.0206 (2)
O20.7094 (2)0.47815 (16)0.09101 (16)0.0260 (3)
O40.76724 (18)−0.16816 (16)−0.41598 (16)0.0215 (2)
O50.85222 (17)0.35498 (17)0.47402 (19)0.0288 (3)
O61.03912 (18)0.5746 (2)0.23839 (17)0.0303 (3)
N10.7457 (2)−0.11960 (18)0.10565 (18)0.0204 (3)
C70.7063 (2)−0.0153 (2)−0.34150 (19)0.0143 (3)
C40.7184 (2)0.0071 (2)−0.16144 (19)0.0146 (3)
C30.6819 (2)0.1745 (2)−0.0860 (2)0.0150 (3)
H30.66070.2725−0.14980.018*
C20.6775 (2)0.1931 (2)0.0855 (2)0.0148 (3)
C50.7511 (2)−0.1354 (2)−0.0614 (2)0.0182 (3)
H50.7781−0.2475−0.11250.022*
C60.6365 (2)0.3698 (2)0.1760 (2)0.0155 (3)
C10.7093 (2)0.0429 (2)0.1755 (2)0.0189 (3)
H10.70510.05590.29090.023*
H6A1.10930.56590.13270.028*
H5A0.96610.28950.42650.028*
H5B0.79500.27930.48680.028*
H6B1.09030.57040.31760.028*
U11U22U33U12U13U23
Sr10.01678 (8)0.01181 (8)0.01109 (8)−0.00511 (5)−0.00483 (5)0.00017 (5)
O10.0290 (6)0.0226 (6)0.0127 (5)−0.0120 (5)−0.0006 (5)−0.0034 (4)
O30.0265 (6)0.0195 (6)0.0153 (5)−0.0035 (5)−0.0100 (5)0.0024 (4)
O20.0417 (8)0.0208 (6)0.0155 (6)−0.0187 (5)−0.0006 (5)−0.0019 (5)
O40.0266 (6)0.0181 (6)0.0196 (6)−0.0042 (5)−0.0097 (5)−0.0059 (5)
O50.0194 (6)0.0245 (6)0.0418 (8)−0.0066 (5)−0.0101 (6)0.0104 (6)
O60.0222 (6)0.0457 (8)0.0198 (6)−0.0126 (6)−0.0007 (5)0.0007 (6)
N10.0317 (8)0.0162 (6)0.0153 (6)−0.0076 (5)−0.0104 (6)0.0037 (5)
C70.0158 (7)0.0163 (7)0.0110 (7)−0.0058 (5)−0.0040 (5)−0.0006 (5)
C40.0177 (7)0.0141 (7)0.0120 (7)−0.0048 (5)−0.0052 (5)−0.0009 (5)
C30.0202 (7)0.0128 (7)0.0131 (7)−0.0065 (5)−0.0056 (5)0.0013 (5)
C20.0195 (7)0.0147 (7)0.0117 (7)−0.0077 (5)−0.0044 (5)−0.0016 (5)
C50.0268 (8)0.0127 (7)0.0161 (7)−0.0060 (6)−0.0084 (6)−0.0004 (6)
C60.0201 (7)0.0156 (7)0.0125 (7)−0.0070 (6)−0.0063 (6)−0.0014 (6)
C10.0273 (8)0.0196 (8)0.0121 (7)−0.0093 (6)−0.0079 (6)0.0016 (6)
Sr1—O62.5287 (13)O5—H5A0.8542
Sr1—O3i2.5377 (12)O5—H5B0.8477
Sr1—O1ii2.5715 (12)O6—H6A0.8468
Sr1—O4iii2.5881 (12)O6—H6B0.8563
Sr1—O52.6050 (13)N1—C11.339 (2)
Sr1—O22.6423 (12)N1—C51.345 (2)
Sr1—O12.7232 (12)N1—Sr1vi2.8065 (14)
Sr1—N1iv2.8064 (14)C7—C41.508 (2)
Sr1—C63.0051 (15)C4—C51.390 (2)
Sr1—H6B2.9429C4—C31.391 (2)
O1—C61.2520 (19)C3—C21.387 (2)
O1—Sr1ii2.5715 (12)C3—H30.9300
O3—C71.2590 (19)C2—C11.388 (2)
O3—Sr1i2.5377 (12)C2—C61.502 (2)
O2—C61.258 (2)C5—H50.9300
O4—C71.2554 (19)C1—H10.9300
O4—Sr1v2.5881 (12)
O6—Sr1—O3i146.80 (4)O1ii—Sr1—H6B119.9
O6—Sr1—O1ii133.77 (4)O4iii—Sr1—H6B65.0
O3i—Sr1—O1ii75.71 (4)O5—Sr1—H6B63.0
O6—Sr1—O4iii77.95 (4)O2—Sr1—H6B98.6
O3i—Sr1—O4iii95.67 (4)O1—Sr1—H6B121.6
O1ii—Sr1—O4iii81.28 (4)N1iv—Sr1—H6B85.2
O6—Sr1—O569.37 (4)C6—Sr1—H6B107.7
O3i—Sr1—O5143.83 (4)Sr1ii—Sr1—H6B128.1
O1ii—Sr1—O570.70 (4)C6—O1—Sr1ii156.53 (11)
O4iii—Sr1—O592.21 (4)C6—O1—Sr190.40 (9)
O6—Sr1—O284.52 (4)Sr1ii—O1—Sr1112.09 (4)
O3i—Sr1—O295.32 (4)C7—O3—Sr1i140.72 (10)
O1ii—Sr1—O2116.27 (4)C6—O2—Sr194.03 (9)
O4iii—Sr1—O2161.21 (4)C7—O4—Sr1v137.91 (10)
O5—Sr1—O287.86 (4)Sr1—O5—H5A127.0
O6—Sr1—O1115.98 (4)Sr1—O5—H5B115.1
O3i—Sr1—O186.90 (4)H5A—O5—H5B100.7
O1ii—Sr1—O167.91 (4)Sr1—O6—H6A131.4
O4iii—Sr1—O1147.46 (4)Sr1—O6—H6B110.7
O5—Sr1—O168.48 (4)H6A—O6—H6B117.3
O2—Sr1—O148.48 (4)C1—N1—C5117.16 (14)
O6—Sr1—N1iv74.58 (5)C1—N1—Sr1vi109.60 (10)
O3i—Sr1—N1iv73.32 (4)C5—N1—Sr1vi130.26 (11)
O1ii—Sr1—N1iv147.89 (4)O4—C7—O3124.65 (14)
O4iii—Sr1—N1iv93.47 (4)O4—C7—C4118.35 (14)
O5—Sr1—N1iv141.38 (4)O3—C7—C4117.00 (13)
O2—Sr1—N1iv75.20 (4)C5—C4—C3118.26 (14)
O1—Sr1—N1iv118.12 (4)C5—C4—C7121.27 (14)
O6—Sr1—C697.37 (4)C3—C4—C7120.27 (13)
O3i—Sr1—C695.75 (4)C2—C3—C4119.12 (14)
O1ii—Sr1—C692.37 (4)C2—C3—H3120.4
O4iii—Sr1—C6165.14 (4)C4—C3—H3120.4
O5—Sr1—C672.98 (4)C3—C2—C1118.28 (14)
O2—Sr1—C624.68 (4)C3—C2—C6122.02 (14)
O1—Sr1—C624.62 (4)C1—C2—C6119.69 (13)
N1iv—Sr1—C698.90 (4)N1—C5—C4123.41 (14)
O6—Sr1—Sr1ii132.57 (3)N1—C5—H5118.3
O3i—Sr1—Sr1ii79.75 (3)C4—C5—H5118.3
O1ii—Sr1—Sr1ii35.06 (3)O1—C6—O2122.85 (14)
O4iii—Sr1—Sr1ii115.72 (3)O1—C6—C2118.69 (14)
O5—Sr1—Sr1ii65.11 (3)O2—C6—C2118.45 (14)
O2—Sr1—Sr1ii81.27 (3)O1—C6—Sr164.98 (8)
O1—Sr1—Sr1ii32.85 (2)O2—C6—Sr161.29 (8)
N1iv—Sr1—Sr1ii142.01 (3)C2—C6—Sr1159.61 (11)
C6—Sr1—Sr1ii57.36 (3)N1—C1—C2123.75 (14)
O6—Sr1—H6B15.8N1—C1—H1118.1
O3i—Sr1—H6B150.4C2—C1—H1118.1
O6—Sr1—O1—C6−43.90 (11)Sr1—O1—C6—O2−21.19 (17)
O3i—Sr1—O1—C6111.03 (10)Sr1ii—O1—C6—C2−6.4 (4)
O1ii—Sr1—O1—C6−173.14 (12)Sr1—O1—C6—C2157.48 (13)
O4iii—Sr1—O1—C6−153.28 (9)Sr1ii—O1—C6—Sr1−163.9 (3)
O5—Sr1—O1—C6−96.05 (10)Sr1—O2—C6—O121.92 (17)
O2—Sr1—O1—C611.13 (9)Sr1—O2—C6—C2−156.75 (12)
N1iv—Sr1—O1—C641.81 (11)C3—C2—C6—O1139.97 (16)
Sr1ii—Sr1—O1—C6−173.14 (12)C1—C2—C6—O1−39.0 (2)
O6—Sr1—O1—Sr1ii129.25 (5)C3—C2—C6—O2−41.3 (2)
O3i—Sr1—O1—Sr1ii−75.83 (5)C1—C2—C6—O2139.73 (16)
O1ii—Sr1—O1—Sr1ii0.0C3—C2—C6—Sr1−125.0 (3)
O4iii—Sr1—O1—Sr1ii19.86 (10)C1—C2—C6—Sr156.1 (4)
O5—Sr1—O1—Sr1ii77.09 (5)O6—Sr1—C6—O1141.06 (10)
O2—Sr1—O1—Sr1ii−175.73 (8)O3i—Sr1—C6—O1−69.51 (10)
N1iv—Sr1—O1—Sr1ii−145.05 (5)O1ii—Sr1—C6—O16.36 (11)
C6—Sr1—O1—Sr1ii173.14 (12)O4iii—Sr1—C6—O170.52 (19)
O6—Sr1—O2—C6121.16 (11)O5—Sr1—C6—O175.34 (10)
O3i—Sr1—O2—C6−92.19 (10)O2—Sr1—C6—O1−159.75 (16)
O1ii—Sr1—O2—C6−15.52 (11)N1iv—Sr1—C6—O1−143.48 (9)
O4iii—Sr1—O2—C6142.24 (12)Sr1ii—Sr1—C6—O14.41 (8)
O5—Sr1—O2—C651.69 (10)O6—Sr1—C6—O2−59.19 (11)
O1—Sr1—O2—C6−11.10 (9)O3i—Sr1—C6—O290.24 (10)
N1iv—Sr1—O2—C6−163.36 (11)O1ii—Sr1—C6—O2166.11 (10)
Sr1ii—Sr1—O2—C6−13.45 (10)O4iii—Sr1—C6—O2−129.73 (16)
Sr1v—O4—C7—O3−33.4 (3)O5—Sr1—C6—O2−124.91 (11)
Sr1v—O4—C7—C4145.77 (12)O1—Sr1—C6—O2159.75 (16)
Sr1i—O3—C7—O4105.41 (18)N1iv—Sr1—C6—O216.27 (11)
Sr1i—O3—C7—C4−73.8 (2)Sr1ii—Sr1—C6—O2164.16 (11)
O4—C7—C4—C5−15.8 (2)O6—Sr1—C6—C235.7 (3)
O3—C7—C4—C5163.49 (15)O3i—Sr1—C6—C2−174.9 (3)
O4—C7—C4—C3169.42 (14)O1ii—Sr1—C6—C2−99.0 (3)
O3—C7—C4—C3−11.3 (2)O4iii—Sr1—C6—C2−34.8 (4)
C5—C4—C3—C2−0.7 (2)O5—Sr1—C6—C2−30.0 (3)
C7—C4—C3—C2174.30 (14)O2—Sr1—C6—C294.9 (3)
C4—C3—C2—C1−0.2 (2)O1—Sr1—C6—C2−105.4 (3)
C4—C3—C2—C6−179.19 (14)N1iv—Sr1—C6—C2111.2 (3)
C1—N1—C5—C4−1.0 (3)Sr1ii—Sr1—C6—C2−100.9 (3)
Sr1vi—N1—C5—C4157.24 (12)C5—N1—C1—C20.0 (3)
C3—C4—C5—N11.3 (2)Sr1vi—N1—C1—C2−162.51 (13)
C7—C4—C5—N1−173.61 (15)C3—C2—C1—N10.6 (2)
Sr1ii—O1—C6—O2174.94 (19)C6—C2—C1—N1179.60 (15)
D—H···AD—HH···AD···AD—H···A
O5—H5A···O4vii0.852.012.8046 (17)155
O5—H5B···O3viii0.852.052.8718 (18)163
O6—H6A···O2ix0.851.872.7135 (17)172
O6—H6B···O5x0.862.032.848 (2)160
C1—H1···O3viii0.932.373.286 (2)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O4i0.852.012.8046 (17)155
O5—H5B⋯O3ii0.852.052.8718 (18)163
O6—H6A⋯O2iii0.851.872.7135 (17)172
O6—H6B⋯O5iv0.862.032.848 (2)160
C1—H1⋯O3ii0.932.373.286 (2)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[tetra-aqua-μ(3)-pyridine-3,5-dicarboxyl-ato-strontium(II)].

Authors:  Hossein Aghabozorg; Andya Nemati; Zohreh Derikvand; Mohammad Ghadermazi; Shirin Daneshvar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23

3.  Poly[diaqua-(μ(3)-pyridine-3,5-dicarboxyl-ato-κN:O:O)copper(II)].

Authors:  Lin Du; Li-Nan Li; Qi-Hua Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-22
  3 in total

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