Literature DB >> 21201331

Poly[tetra-aqua-μ(3)-pyridine-3,5-dicarboxyl-ato-strontium(II)].

Hossein Aghabozorg, Andya Nemati, Zohreh Derikvand, Mohammad Ghadermazi, Shirin Daneshvar.   

Abstract

The reaction of strontium(II) nitrate with the proton-transfer compound (pdaH(2))(py-3,5-dc)·H(2)O (where pda = propane-1,3-diamine and py-3,5-dcH(2) = pyridine-3,5-dicarboxylic acid) leads to the formation of the title polymeric compound, [Sr(C(7)H(3)NO(4))(H(2)O)(4)](n). The propane-1,3-diaminium cation is not incorporated in this crystal structure. The Sr(II) atom lies on an inversion centre and is eight-coordinated by four O atoms from three py-3,5-dc ligands and four O atoms from four coordinated water mol-ecules. The coordination polyhedron of the Sr(II) atom is a distorted dodeca-hedron. These binuclear units are connected via the carboxyl-ate O atoms to build a one-dimensional polymeric chain. In the crystal structure, non-covalant inter-actions consisting of hydrogen bonds (X-H⋯O, with X = O and C) and π-π stacking inter-actions [3.4604 (19) Å] connect the various components to form a supra-molecular structure.

Entities:  

Year:  2008        PMID: 21201331      PMCID: PMC2960463          DOI: 10.1107/S1600536808001335

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Aghabozorg et al. (2006 ▶, 2007 ▶, 2008 ▶); Starosta et al. (2002a ▶,b ▶).

Experimental

Crystal data

[Sr(C7H3NO4)(H2O)4] M = 324.79 Triclinic, a = 7.066 (2) Å b = 8.308 (3) Å c = 10.368 (3) Å α = 69.405 (6)° β = 72.144 (6)° γ = 75.944 (6)° V = 536.0 (3) Å3 Z = 2 Mo Kα radiation μ = 5.06 mm−1 T = 100 (2) K 0.30 × 0.22 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (APEX2; Bruker, 2005 ▶) T min = 0.257, T max = 0.402 4533 measured reflections 2540 independent reflections 2277 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.065 S = 0.99 2540 reflections 154 parameters H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.66 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808001335/su2030sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808001335/su2030Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sr(C7H3NO4)(H2O)4]Z = 2
Mr = 324.79F000 = 324
Triclinic, P1Dx = 2.012 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.066 (2) ÅCell parameters from 2708 reflections
b = 8.308 (3) Åθ = 2.6–30.0º
c = 10.368 (3) ŵ = 5.06 mm1
α = 69.405 (6)ºT = 100 (2) K
β = 72.144 (6)ºPrism, colourless
γ = 75.944 (6)º0.30 × 0.22 × 0.18 mm
V = 536.0 (3) Å3
Bruker APEXII CCD area-detector diffractometer2540 independent reflections
Radiation source: fine-focus sealed tube2277 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.038
T = 100(2) Kθmax = 28.0º
ω scansθmin = 2.2º
Absorption correction: multi-scan(APEX2; Bruker, 2005)h = −8→9
Tmin = 0.257, Tmax = 0.402k = −10→10
4533 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.065  w = 1/[σ2(Fo2) + (0.0193P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
2540 reflectionsΔρmax = 0.65 e Å3
154 parametersΔρmin = −0.66 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sr10.27281 (3)0.61146 (3)0.39986 (2)0.00977 (8)
O10.0595 (3)0.4107 (2)0.64828 (18)0.0145 (4)
O20.3414 (3)0.4771 (2)0.65401 (17)0.0134 (4)
O3−0.3603 (3)0.0688 (3)1.10676 (18)0.0171 (4)
O4−0.2944 (3)0.0464 (3)1.30871 (19)0.0208 (4)
N10.1904 (3)0.3128 (3)1.0958 (2)0.0117 (4)
C10.2362 (4)0.3684 (3)0.9544 (3)0.0106 (5)
H1A0.34690.43060.90640.013*
C20.1298 (4)0.3398 (3)0.8736 (2)0.0098 (5)
C3−0.0306 (4)0.2479 (3)0.9450 (2)0.0110 (5)
H3A−0.10610.22570.89310.013*
C4−0.0808 (4)0.1885 (3)1.0922 (3)0.0106 (5)
C50.0352 (4)0.2248 (3)1.1627 (3)0.0120 (5)
H5A0.00230.18491.26350.014*
C60.1813 (4)0.4129 (3)0.7142 (2)0.0103 (5)
C7−0.2567 (4)0.0930 (3)1.1741 (3)0.0115 (5)
O1W0.3572 (3)0.8563 (2)0.17360 (18)0.0157 (4)
H1WA0.35910.88110.08880.019*
H1WB0.44160.93160.16310.019*
O2W0.4291 (3)0.8227 (3)0.4569 (2)0.0253 (5)
H2WA0.50460.89980.40430.030*
H2WB0.38020.84040.53890.030*
O3W−0.0230 (3)0.8411 (3)0.4823 (2)0.0223 (4)
H3WA−0.10780.89360.42130.027*
H3WB−0.11450.78420.54170.027*
O4W0.3526 (3)0.3705 (3)0.2812 (3)0.0372 (6)
H4WA0.31920.34990.21940.045*
H4WB0.44240.29600.30080.045*
U11U22U33U12U13U23
Sr10.00856 (13)0.01397 (13)0.00712 (11)−0.00508 (8)−0.00166 (8)−0.00157 (8)
O10.0111 (9)0.0211 (11)0.0115 (8)−0.0067 (7)−0.0042 (7)−0.0012 (7)
O20.0096 (9)0.0179 (10)0.0100 (8)−0.0065 (7)−0.0011 (7)0.0008 (7)
O30.0166 (10)0.0243 (11)0.0120 (8)−0.0116 (8)−0.0025 (7)−0.0026 (8)
O40.0223 (11)0.0316 (13)0.0097 (8)−0.0172 (9)0.0009 (8)−0.0028 (8)
N10.0117 (11)0.0117 (11)0.0117 (10)−0.0014 (8)−0.0038 (8)−0.0028 (8)
C10.0089 (12)0.0102 (13)0.0122 (11)−0.0021 (9)−0.0020 (9)−0.0029 (10)
C20.0083 (12)0.0095 (13)0.0095 (11)0.0004 (9)−0.0023 (9)−0.0013 (9)
C30.0105 (12)0.0109 (13)0.0111 (11)−0.0005 (10)−0.0040 (9)−0.0021 (9)
C40.0100 (12)0.0089 (13)0.0110 (11)−0.0026 (9)−0.0010 (9)−0.0011 (9)
C50.0138 (13)0.0108 (13)0.0096 (11)−0.0019 (10)−0.0016 (9)−0.0020 (9)
C60.0107 (12)0.0085 (13)0.0104 (11)−0.0011 (9)−0.0021 (9)−0.0018 (9)
C70.0112 (13)0.0112 (13)0.0112 (11)−0.0022 (10)−0.0008 (9)−0.0034 (10)
O1W0.0186 (10)0.0179 (10)0.0109 (8)−0.0100 (8)−0.0046 (7)0.0010 (7)
O2W0.0307 (12)0.0316 (13)0.0181 (10)−0.0236 (10)0.0068 (9)−0.0110 (9)
O3W0.0261 (11)0.0217 (12)0.0211 (10)−0.0013 (9)−0.0091 (8)−0.0077 (9)
O4W0.0324 (13)0.0473 (16)0.0527 (15)0.0211 (11)−0.0306 (11)−0.0405 (13)
Sr1—O1W2.5240 (19)C1—C21.392 (3)
Sr1—O4W2.568 (2)C1—H1A0.9500
Sr1—O2i2.5816 (19)C2—C31.387 (3)
Sr1—O2W2.592 (2)C2—C61.505 (3)
Sr1—O1ii2.6063 (19)C3—C41.386 (3)
Sr1—O3W2.618 (2)C3—H3A0.9500
Sr1—O22.6223 (19)C4—C51.393 (3)
Sr1—O12.7395 (18)C4—C71.501 (3)
Sr1—C63.034 (3)C5—H5A0.9500
Sr1—Sr1i4.0677 (11)O1W—H1WA0.8258
Sr1—Sr1ii4.2965 (12)O1W—H1WB0.9233
O1—C61.259 (3)O2W—H2WA0.8569
O1—Sr1ii2.6063 (19)O2W—H2WB0.8650
O2—C61.257 (3)O3W—H3WA0.9275
O2—Sr1i2.5816 (19)O3W—H3WB0.8485
O3—C71.244 (3)O4W—H4WA0.8287
O4—C71.269 (3)O4W—H4WB0.7918
N1—C11.332 (3)Cg1—Cg1(N1/C1-C5)iii3.4604 (19)
N1—C51.335 (3)
O1W—Sr1—O4W96.37 (8)O1ii—Sr1—Sr1ii37.58 (4)
O1W—Sr1—O2i82.73 (6)O3W—Sr1—Sr1ii69.44 (5)
O4W—Sr1—O2i73.73 (6)O2—Sr1—Sr1ii84.10 (4)
O1W—Sr1—O2W72.85 (7)O1—Sr1—Sr1ii35.47 (4)
O4W—Sr1—O2W144.24 (7)C6—Sr1—Sr1ii59.79 (5)
O2i—Sr1—O2W71.15 (7)Sr1i—Sr1—Sr1ii115.28 (2)
O1W—Sr1—O1ii93.47 (6)C6—O1—Sr1ii160.12 (16)
O4W—Sr1—O1ii72.57 (6)C6—O1—Sr190.96 (15)
O2i—Sr1—O1ii145.42 (6)Sr1ii—O1—Sr1106.95 (6)
O2W—Sr1—O1ii140.38 (7)C6—O2—Sr1i141.33 (16)
O1W—Sr1—O3W85.06 (7)C6—O2—Sr196.51 (14)
O4W—Sr1—O3W141.51 (7)Sr1i—O2—Sr1102.83 (6)
O2i—Sr1—O3W143.96 (6)C1—N1—C5118.1 (2)
O2W—Sr1—O3W72.86 (7)N1—C1—C2123.1 (2)
O1ii—Sr1—O3W68.96 (6)N1—C1—H1A118.4
O1W—Sr1—O2141.03 (6)C2—C1—H1A118.4
O4W—Sr1—O2109.25 (7)C3—C2—C1117.8 (2)
O2i—Sr1—O277.17 (6)C3—C2—C6121.0 (2)
O2W—Sr1—O269.18 (6)C1—C2—C6121.1 (2)
O1ii—Sr1—O2121.59 (5)C4—C3—C2120.0 (2)
O3W—Sr1—O291.91 (6)C4—C3—H3A120.0
O1W—Sr1—O1161.19 (6)C2—C3—H3A120.0
O4W—Sr1—O192.07 (8)C3—C4—C5117.5 (2)
O2i—Sr1—O1115.84 (6)C3—C4—C7121.9 (2)
O2W—Sr1—O1109.03 (6)C5—C4—C7120.6 (2)
O1ii—Sr1—O173.05 (6)N1—C5—C4123.4 (2)
O3W—Sr1—O177.93 (6)N1—C5—H5A118.3
O2—Sr1—O148.73 (5)C4—C5—H5A118.3
O1W—Sr1—C6159.89 (7)O2—C6—O1123.3 (2)
O4W—Sr1—C6103.03 (8)O2—C6—C2118.2 (2)
O2i—Sr1—C697.56 (6)O1—C6—C2118.4 (2)
O2W—Sr1—C688.14 (7)O2—C6—Sr159.18 (12)
O1ii—Sr1—C697.29 (6)O1—C6—Sr164.53 (13)
O3W—Sr1—C683.05 (7)C2—C6—Sr1171.70 (17)
O2—Sr1—C624.31 (6)O3—C7—O4123.8 (2)
O1—Sr1—C624.51 (6)O3—C7—C4118.4 (2)
O1W—Sr1—Sr1i114.89 (5)O4—C7—C4117.7 (2)
O4W—Sr1—Sr1i91.99 (5)Sr1—O1W—H1WA138.3
O2i—Sr1—Sr1i38.94 (4)Sr1—O1W—H1WB121.7
O2W—Sr1—Sr1i64.27 (5)H1WA—O1W—H1WB97.4
O1ii—Sr1—Sr1i149.34 (4)Sr1—O2W—H2WA132.5
O3W—Sr1—Sr1i122.32 (5)Sr1—O2W—H2WB118.0
O2—Sr1—Sr1i38.23 (4)H2WA—O2W—H2WB107.9
O1—Sr1—Sr1i81.46 (4)Sr1—O3W—H3WA114.3
C6—Sr1—Sr1i59.74 (5)Sr1—O3W—H3WB106.3
O1W—Sr1—Sr1ii129.81 (4)H3WA—O3W—H3WB89.7
O4W—Sr1—Sr1ii80.87 (6)Sr1—O4W—H4WA138.5
O2i—Sr1—Sr1ii141.02 (4)Sr1—O4W—H4WB115.5
O2W—Sr1—Sr1ii132.47 (5)H4WA—O4W—H4WB105.6
O1W—Sr1—O1—C6−125.5 (2)C2—C3—C4—C50.0 (4)
O4W—Sr1—O1—C6117.69 (15)C2—C3—C4—C7178.2 (2)
O2i—Sr1—O1—C644.79 (16)C1—N1—C5—C40.0 (4)
O2W—Sr1—O1—C6−32.93 (16)C3—C4—C5—N1−0.1 (4)
O1ii—Sr1—O1—C6−171.24 (19)C7—C4—C5—N1−178.3 (2)
O3W—Sr1—O1—C6−99.82 (16)Sr1i—O2—C6—O1−112.8 (3)
O2—Sr1—O1—C63.66 (14)Sr1—O2—C6—O17.2 (3)
Sr1i—Sr1—O1—C625.99 (14)Sr1i—O2—C6—C269.0 (3)
Sr1ii—Sr1—O1—C6−171.24 (19)Sr1—O2—C6—C2−170.94 (19)
O1W—Sr1—O1—Sr1ii45.7 (2)Sr1i—O2—C6—Sr1−120.0 (2)
O4W—Sr1—O1—Sr1ii−71.07 (7)Sr1ii—O1—C6—O2−161.5 (4)
O2i—Sr1—O1—Sr1ii−143.98 (6)Sr1—O1—C6—O2−6.9 (3)
O2W—Sr1—O1—Sr1ii138.31 (7)Sr1ii—O1—C6—C216.7 (7)
O1ii—Sr1—O1—Sr1ii0.0Sr1—O1—C6—C2171.3 (2)
O3W—Sr1—O1—Sr1ii71.42 (7)Sr1ii—O1—C6—Sr1−154.6 (5)
O2—Sr1—O1—Sr1ii174.89 (11)C3—C2—C6—O2−171.8 (2)
C6—Sr1—O1—Sr1ii171.24 (19)C1—C2—C6—O210.9 (4)
Sr1i—Sr1—O1—Sr1ii−162.78 (6)C3—C2—C6—O19.9 (4)
O1W—Sr1—O2—C6152.90 (14)C1—C2—C6—O1−167.3 (2)
O4W—Sr1—O2—C6−78.87 (16)O1W—Sr1—C6—O2−56.4 (2)
O2i—Sr1—O2—C6−146.30 (18)O4W—Sr1—C6—O2108.05 (15)
O2W—Sr1—O2—C6139.24 (16)O2i—Sr1—C6—O233.08 (18)
O1ii—Sr1—O2—C62.05 (17)O2W—Sr1—C6—O2−37.63 (15)
O3W—Sr1—O2—C668.40 (15)O1ii—Sr1—C6—O2−178.24 (15)
O1—Sr1—O2—C6−3.68 (14)O3W—Sr1—C6—O2−110.59 (15)
Sr1i—Sr1—O2—C6−146.30 (18)O1—Sr1—C6—O2173.3 (2)
Sr1ii—Sr1—O2—C6−0.71 (14)Sr1i—Sr1—C6—O223.42 (13)
O1W—Sr1—O2—Sr1i−60.80 (11)Sr1ii—Sr1—C6—O2179.19 (16)
O4W—Sr1—O2—Sr1i67.43 (8)O1W—Sr1—C6—O1130.25 (19)
O2i—Sr1—O2—Sr1i0.0O4W—Sr1—C6—O1−65.27 (16)
O2W—Sr1—O2—Sr1i−74.46 (7)O2i—Sr1—C6—O1−140.24 (15)
O1ii—Sr1—O2—Sr1i148.35 (6)O2W—Sr1—C6—O1149.06 (15)
O3W—Sr1—O2—Sr1i−145.30 (7)O1ii—Sr1—C6—O18.45 (18)
O1—Sr1—O2—Sr1i142.62 (10)O3W—Sr1—C6—O176.10 (15)
C6—Sr1—O2—Sr1i146.30 (18)O2—Sr1—C6—O1−173.3 (2)
Sr1ii—Sr1—O2—Sr1i145.59 (6)Sr1i—Sr1—C6—O1−149.89 (16)
C5—N1—C1—C20.3 (4)Sr1ii—Sr1—C6—O15.87 (12)
N1—C1—C2—C3−0.4 (4)C3—C4—C7—O3−0.7 (4)
N1—C1—C2—C6177.0 (2)C5—C4—C7—O3177.5 (2)
C1—C2—C3—C40.2 (4)C3—C4—C7—O4−178.6 (2)
C6—C2—C3—C4−177.1 (2)C5—C4—C7—O4−0.4 (4)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O3ii0.831.922.744 (3)178
O1W—H1WB···O3iv0.921.852.754 (3)168
O2W—H2WA···O4iv0.861.902.747 (3)169
O2W—H2WB···O4iii0.861.982.816 (3)162
O3W—H3WA···O4v0.931.952.863 (3)168
O3W—H3WB···O4Wii0.852.313.159 (4)175
O4W—H4WA···N1vi0.831.922.739 (4)169
O4W—H4WB···O4vii0.792.423.192 (4)164
C3—H3A···O1Wii0.952.403.324 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O3ii0.831.922.744 (3)178
O1W—H1WB⋯O3iii0.921.852.754 (3)168
O2W—H2WA⋯O4iii0.861.902.747 (3)169
O2W—H2WB⋯O4i0.861.982.816 (3)162
O3W—H3WA⋯O4iv0.931.952.863 (3)168
O3W—H3WB⋯O4Wii0.852.313.159 (4)175
O4W—H4WA⋯N1v0.831.922.739 (4)169
O4W—H4WB⋯O4vi0.792.423.192 (4)164
C3—H3A⋯O1Wii0.952.403.324 (4)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[triaqua-μ(4)-pyridine-3,5-dicarboxyl-ato-barium(II)].

Authors:  Hossein Aghabozorg; Andya Nemati; Zohreh Derikvand; Mohammad Ghadermazi; Shirin Daneshvar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23
  2 in total
  3 in total

1.  Poly[μ(2)-aqua-aqua-μ(4)-pyridine-2,4-dicarboxyl-ato-strontium].

Authors:  Janet Soleimannejad; Yaghoub Mohammadzadeh; Hossein Aghabozorg; Zohreh Derikvand
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-15

2.  Poly[triaqua-μ(4)-pyridine-3,5-dicarboxyl-ato-barium(II)].

Authors:  Hossein Aghabozorg; Andya Nemati; Zohreh Derikvand; Mohammad Ghadermazi; Shirin Daneshvar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23

3.  Poly[diaqua-(μ(5)-pyridine-3,5-dicarboxyl-ato)strontium].

Authors:  Dan Li; Chaowen Duan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31
  3 in total

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