| Literature DB >> 21201331 |
Hossein Aghabozorg, Andya Nemati, Zohreh Derikvand, Mohammad Ghadermazi, Shirin Daneshvar.
Abstract
The reaction of strontium(II) nitrate with the proton-transfer compound (pdaH(2))(py-3,5-dc)·H(2)O (where pda = propane-1,3-diamine and py-3,5-dcH(2) = pyridine-3,5-dicarboxylic acid) leads to the formation of the title polymeric compound, [Sr(C(7)H(3)NO(4))(H(2)O)(4)](n). The propane-1,3-diaminium cation is not incorporated in this crystal structure. The Sr(II) atom lies on an inversion centre and is eight-coordinated by four O atoms from three py-3,5-dc ligands and four O atoms from four coordinated water mol-ecules. The coordination polyhedron of the Sr(II) atom is a distorted dodeca-hedron. These binuclear units are connected via the carboxyl-ate O atoms to build a one-dimensional polymeric chain. In the crystal structure, non-covalant inter-actions consisting of hydrogen bonds (X-H⋯O, with X = O and C) and π-π stacking inter-actions [3.4604 (19) Å] connect the various components to form a supra-molecular structure.Entities:
Year: 2008 PMID: 21201331 PMCID: PMC2960463 DOI: 10.1107/S1600536808001335
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Sr(C7H3NO4)(H2O)4] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2708 reflections | |
| θ = 2.6–30.0º | |
| µ = 5.06 mm−1 | |
| α = 69.405 (6)º | |
| β = 72.144 (6)º | Prism, colourless |
| γ = 75.944 (6)º | 0.30 × 0.22 × 0.18 mm |
| Bruker APEXII CCD area-detector diffractometer | 2540 independent reflections |
| Radiation source: fine-focus sealed tube | 2277 reflections with |
| Monochromator: graphite | |
| θmax = 28.0º | |
| ω scans | θmin = 2.2º |
| Absorption correction: multi-scan(APEX2; Bruker, 2005) | |
| 4533 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 2540 reflections | Δρmax = 0.65 e Å−3 |
| 154 parameters | Δρmin = −0.66 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Sr1 | 0.27281 (3) | 0.61146 (3) | 0.39986 (2) | 0.00977 (8) | |
| O1 | 0.0595 (3) | 0.4107 (2) | 0.64828 (18) | 0.0145 (4) | |
| O2 | 0.3414 (3) | 0.4771 (2) | 0.65401 (17) | 0.0134 (4) | |
| O3 | −0.3603 (3) | 0.0688 (3) | 1.10676 (18) | 0.0171 (4) | |
| O4 | −0.2944 (3) | 0.0464 (3) | 1.30871 (19) | 0.0208 (4) | |
| N1 | 0.1904 (3) | 0.3128 (3) | 1.0958 (2) | 0.0117 (4) | |
| C1 | 0.2362 (4) | 0.3684 (3) | 0.9544 (3) | 0.0106 (5) | |
| H1A | 0.3469 | 0.4306 | 0.9064 | 0.013* | |
| C2 | 0.1298 (4) | 0.3398 (3) | 0.8736 (2) | 0.0098 (5) | |
| C3 | −0.0306 (4) | 0.2479 (3) | 0.9450 (2) | 0.0110 (5) | |
| H3A | −0.1061 | 0.2257 | 0.8931 | 0.013* | |
| C4 | −0.0808 (4) | 0.1885 (3) | 1.0922 (3) | 0.0106 (5) | |
| C5 | 0.0352 (4) | 0.2248 (3) | 1.1627 (3) | 0.0120 (5) | |
| H5A | 0.0023 | 0.1849 | 1.2635 | 0.014* | |
| C6 | 0.1813 (4) | 0.4129 (3) | 0.7142 (2) | 0.0103 (5) | |
| C7 | −0.2567 (4) | 0.0930 (3) | 1.1741 (3) | 0.0115 (5) | |
| O1W | 0.3572 (3) | 0.8563 (2) | 0.17360 (18) | 0.0157 (4) | |
| H1WA | 0.3591 | 0.8811 | 0.0888 | 0.019* | |
| H1WB | 0.4416 | 0.9316 | 0.1631 | 0.019* | |
| O2W | 0.4291 (3) | 0.8227 (3) | 0.4569 (2) | 0.0253 (5) | |
| H2WA | 0.5046 | 0.8998 | 0.4043 | 0.030* | |
| H2WB | 0.3802 | 0.8404 | 0.5389 | 0.030* | |
| O3W | −0.0230 (3) | 0.8411 (3) | 0.4823 (2) | 0.0223 (4) | |
| H3WA | −0.1078 | 0.8936 | 0.4213 | 0.027* | |
| H3WB | −0.1145 | 0.7842 | 0.5417 | 0.027* | |
| O4W | 0.3526 (3) | 0.3705 (3) | 0.2812 (3) | 0.0372 (6) | |
| H4WA | 0.3192 | 0.3499 | 0.2194 | 0.045* | |
| H4WB | 0.4424 | 0.2960 | 0.3008 | 0.045* |
| Sr1 | 0.00856 (13) | 0.01397 (13) | 0.00712 (11) | −0.00508 (8) | −0.00166 (8) | −0.00157 (8) |
| O1 | 0.0111 (9) | 0.0211 (11) | 0.0115 (8) | −0.0067 (7) | −0.0042 (7) | −0.0012 (7) |
| O2 | 0.0096 (9) | 0.0179 (10) | 0.0100 (8) | −0.0065 (7) | −0.0011 (7) | 0.0008 (7) |
| O3 | 0.0166 (10) | 0.0243 (11) | 0.0120 (8) | −0.0116 (8) | −0.0025 (7) | −0.0026 (8) |
| O4 | 0.0223 (11) | 0.0316 (13) | 0.0097 (8) | −0.0172 (9) | 0.0009 (8) | −0.0028 (8) |
| N1 | 0.0117 (11) | 0.0117 (11) | 0.0117 (10) | −0.0014 (8) | −0.0038 (8) | −0.0028 (8) |
| C1 | 0.0089 (12) | 0.0102 (13) | 0.0122 (11) | −0.0021 (9) | −0.0020 (9) | −0.0029 (10) |
| C2 | 0.0083 (12) | 0.0095 (13) | 0.0095 (11) | 0.0004 (9) | −0.0023 (9) | −0.0013 (9) |
| C3 | 0.0105 (12) | 0.0109 (13) | 0.0111 (11) | −0.0005 (10) | −0.0040 (9) | −0.0021 (9) |
| C4 | 0.0100 (12) | 0.0089 (13) | 0.0110 (11) | −0.0026 (9) | −0.0010 (9) | −0.0011 (9) |
| C5 | 0.0138 (13) | 0.0108 (13) | 0.0096 (11) | −0.0019 (10) | −0.0016 (9) | −0.0020 (9) |
| C6 | 0.0107 (12) | 0.0085 (13) | 0.0104 (11) | −0.0011 (9) | −0.0021 (9) | −0.0018 (9) |
| C7 | 0.0112 (13) | 0.0112 (13) | 0.0112 (11) | −0.0022 (10) | −0.0008 (9) | −0.0034 (10) |
| O1W | 0.0186 (10) | 0.0179 (10) | 0.0109 (8) | −0.0100 (8) | −0.0046 (7) | 0.0010 (7) |
| O2W | 0.0307 (12) | 0.0316 (13) | 0.0181 (10) | −0.0236 (10) | 0.0068 (9) | −0.0110 (9) |
| O3W | 0.0261 (11) | 0.0217 (12) | 0.0211 (10) | −0.0013 (9) | −0.0091 (8) | −0.0077 (9) |
| O4W | 0.0324 (13) | 0.0473 (16) | 0.0527 (15) | 0.0211 (11) | −0.0306 (11) | −0.0405 (13) |
| Sr1—O1W | 2.5240 (19) | C1—C2 | 1.392 (3) |
| Sr1—O4W | 2.568 (2) | C1—H1A | 0.9500 |
| Sr1—O2i | 2.5816 (19) | C2—C3 | 1.387 (3) |
| Sr1—O2W | 2.592 (2) | C2—C6 | 1.505 (3) |
| Sr1—O1ii | 2.6063 (19) | C3—C4 | 1.386 (3) |
| Sr1—O3W | 2.618 (2) | C3—H3A | 0.9500 |
| Sr1—O2 | 2.6223 (19) | C4—C5 | 1.393 (3) |
| Sr1—O1 | 2.7395 (18) | C4—C7 | 1.501 (3) |
| Sr1—C6 | 3.034 (3) | C5—H5A | 0.9500 |
| Sr1—Sr1i | 4.0677 (11) | O1W—H1WA | 0.8258 |
| Sr1—Sr1ii | 4.2965 (12) | O1W—H1WB | 0.9233 |
| O1—C6 | 1.259 (3) | O2W—H2WA | 0.8569 |
| O1—Sr1ii | 2.6063 (19) | O2W—H2WB | 0.8650 |
| O2—C6 | 1.257 (3) | O3W—H3WA | 0.9275 |
| O2—Sr1i | 2.5816 (19) | O3W—H3WB | 0.8485 |
| O3—C7 | 1.244 (3) | O4W—H4WA | 0.8287 |
| O4—C7 | 1.269 (3) | O4W—H4WB | 0.7918 |
| N1—C1 | 1.332 (3) | Cg1—Cg1(N1/C1-C5)iii | 3.4604 (19) |
| N1—C5 | 1.335 (3) | ||
| O1W—Sr1—O4W | 96.37 (8) | O1ii—Sr1—Sr1ii | 37.58 (4) |
| O1W—Sr1—O2i | 82.73 (6) | O3W—Sr1—Sr1ii | 69.44 (5) |
| O4W—Sr1—O2i | 73.73 (6) | O2—Sr1—Sr1ii | 84.10 (4) |
| O1W—Sr1—O2W | 72.85 (7) | O1—Sr1—Sr1ii | 35.47 (4) |
| O4W—Sr1—O2W | 144.24 (7) | C6—Sr1—Sr1ii | 59.79 (5) |
| O2i—Sr1—O2W | 71.15 (7) | Sr1i—Sr1—Sr1ii | 115.28 (2) |
| O1W—Sr1—O1ii | 93.47 (6) | C6—O1—Sr1ii | 160.12 (16) |
| O4W—Sr1—O1ii | 72.57 (6) | C6—O1—Sr1 | 90.96 (15) |
| O2i—Sr1—O1ii | 145.42 (6) | Sr1ii—O1—Sr1 | 106.95 (6) |
| O2W—Sr1—O1ii | 140.38 (7) | C6—O2—Sr1i | 141.33 (16) |
| O1W—Sr1—O3W | 85.06 (7) | C6—O2—Sr1 | 96.51 (14) |
| O4W—Sr1—O3W | 141.51 (7) | Sr1i—O2—Sr1 | 102.83 (6) |
| O2i—Sr1—O3W | 143.96 (6) | C1—N1—C5 | 118.1 (2) |
| O2W—Sr1—O3W | 72.86 (7) | N1—C1—C2 | 123.1 (2) |
| O1ii—Sr1—O3W | 68.96 (6) | N1—C1—H1A | 118.4 |
| O1W—Sr1—O2 | 141.03 (6) | C2—C1—H1A | 118.4 |
| O4W—Sr1—O2 | 109.25 (7) | C3—C2—C1 | 117.8 (2) |
| O2i—Sr1—O2 | 77.17 (6) | C3—C2—C6 | 121.0 (2) |
| O2W—Sr1—O2 | 69.18 (6) | C1—C2—C6 | 121.1 (2) |
| O1ii—Sr1—O2 | 121.59 (5) | C4—C3—C2 | 120.0 (2) |
| O3W—Sr1—O2 | 91.91 (6) | C4—C3—H3A | 120.0 |
| O1W—Sr1—O1 | 161.19 (6) | C2—C3—H3A | 120.0 |
| O4W—Sr1—O1 | 92.07 (8) | C3—C4—C5 | 117.5 (2) |
| O2i—Sr1—O1 | 115.84 (6) | C3—C4—C7 | 121.9 (2) |
| O2W—Sr1—O1 | 109.03 (6) | C5—C4—C7 | 120.6 (2) |
| O1ii—Sr1—O1 | 73.05 (6) | N1—C5—C4 | 123.4 (2) |
| O3W—Sr1—O1 | 77.93 (6) | N1—C5—H5A | 118.3 |
| O2—Sr1—O1 | 48.73 (5) | C4—C5—H5A | 118.3 |
| O1W—Sr1—C6 | 159.89 (7) | O2—C6—O1 | 123.3 (2) |
| O4W—Sr1—C6 | 103.03 (8) | O2—C6—C2 | 118.2 (2) |
| O2i—Sr1—C6 | 97.56 (6) | O1—C6—C2 | 118.4 (2) |
| O2W—Sr1—C6 | 88.14 (7) | O2—C6—Sr1 | 59.18 (12) |
| O1ii—Sr1—C6 | 97.29 (6) | O1—C6—Sr1 | 64.53 (13) |
| O3W—Sr1—C6 | 83.05 (7) | C2—C6—Sr1 | 171.70 (17) |
| O2—Sr1—C6 | 24.31 (6) | O3—C7—O4 | 123.8 (2) |
| O1—Sr1—C6 | 24.51 (6) | O3—C7—C4 | 118.4 (2) |
| O1W—Sr1—Sr1i | 114.89 (5) | O4—C7—C4 | 117.7 (2) |
| O4W—Sr1—Sr1i | 91.99 (5) | Sr1—O1W—H1WA | 138.3 |
| O2i—Sr1—Sr1i | 38.94 (4) | Sr1—O1W—H1WB | 121.7 |
| O2W—Sr1—Sr1i | 64.27 (5) | H1WA—O1W—H1WB | 97.4 |
| O1ii—Sr1—Sr1i | 149.34 (4) | Sr1—O2W—H2WA | 132.5 |
| O3W—Sr1—Sr1i | 122.32 (5) | Sr1—O2W—H2WB | 118.0 |
| O2—Sr1—Sr1i | 38.23 (4) | H2WA—O2W—H2WB | 107.9 |
| O1—Sr1—Sr1i | 81.46 (4) | Sr1—O3W—H3WA | 114.3 |
| C6—Sr1—Sr1i | 59.74 (5) | Sr1—O3W—H3WB | 106.3 |
| O1W—Sr1—Sr1ii | 129.81 (4) | H3WA—O3W—H3WB | 89.7 |
| O4W—Sr1—Sr1ii | 80.87 (6) | Sr1—O4W—H4WA | 138.5 |
| O2i—Sr1—Sr1ii | 141.02 (4) | Sr1—O4W—H4WB | 115.5 |
| O2W—Sr1—Sr1ii | 132.47 (5) | H4WA—O4W—H4WB | 105.6 |
| O1W—Sr1—O1—C6 | −125.5 (2) | C2—C3—C4—C5 | 0.0 (4) |
| O4W—Sr1—O1—C6 | 117.69 (15) | C2—C3—C4—C7 | 178.2 (2) |
| O2i—Sr1—O1—C6 | 44.79 (16) | C1—N1—C5—C4 | 0.0 (4) |
| O2W—Sr1—O1—C6 | −32.93 (16) | C3—C4—C5—N1 | −0.1 (4) |
| O1ii—Sr1—O1—C6 | −171.24 (19) | C7—C4—C5—N1 | −178.3 (2) |
| O3W—Sr1—O1—C6 | −99.82 (16) | Sr1i—O2—C6—O1 | −112.8 (3) |
| O2—Sr1—O1—C6 | 3.66 (14) | Sr1—O2—C6—O1 | 7.2 (3) |
| Sr1i—Sr1—O1—C6 | 25.99 (14) | Sr1i—O2—C6—C2 | 69.0 (3) |
| Sr1ii—Sr1—O1—C6 | −171.24 (19) | Sr1—O2—C6—C2 | −170.94 (19) |
| O1W—Sr1—O1—Sr1ii | 45.7 (2) | Sr1i—O2—C6—Sr1 | −120.0 (2) |
| O4W—Sr1—O1—Sr1ii | −71.07 (7) | Sr1ii—O1—C6—O2 | −161.5 (4) |
| O2i—Sr1—O1—Sr1ii | −143.98 (6) | Sr1—O1—C6—O2 | −6.9 (3) |
| O2W—Sr1—O1—Sr1ii | 138.31 (7) | Sr1ii—O1—C6—C2 | 16.7 (7) |
| O1ii—Sr1—O1—Sr1ii | 0.0 | Sr1—O1—C6—C2 | 171.3 (2) |
| O3W—Sr1—O1—Sr1ii | 71.42 (7) | Sr1ii—O1—C6—Sr1 | −154.6 (5) |
| O2—Sr1—O1—Sr1ii | 174.89 (11) | C3—C2—C6—O2 | −171.8 (2) |
| C6—Sr1—O1—Sr1ii | 171.24 (19) | C1—C2—C6—O2 | 10.9 (4) |
| Sr1i—Sr1—O1—Sr1ii | −162.78 (6) | C3—C2—C6—O1 | 9.9 (4) |
| O1W—Sr1—O2—C6 | 152.90 (14) | C1—C2—C6—O1 | −167.3 (2) |
| O4W—Sr1—O2—C6 | −78.87 (16) | O1W—Sr1—C6—O2 | −56.4 (2) |
| O2i—Sr1—O2—C6 | −146.30 (18) | O4W—Sr1—C6—O2 | 108.05 (15) |
| O2W—Sr1—O2—C6 | 139.24 (16) | O2i—Sr1—C6—O2 | 33.08 (18) |
| O1ii—Sr1—O2—C6 | 2.05 (17) | O2W—Sr1—C6—O2 | −37.63 (15) |
| O3W—Sr1—O2—C6 | 68.40 (15) | O1ii—Sr1—C6—O2 | −178.24 (15) |
| O1—Sr1—O2—C6 | −3.68 (14) | O3W—Sr1—C6—O2 | −110.59 (15) |
| Sr1i—Sr1—O2—C6 | −146.30 (18) | O1—Sr1—C6—O2 | 173.3 (2) |
| Sr1ii—Sr1—O2—C6 | −0.71 (14) | Sr1i—Sr1—C6—O2 | 23.42 (13) |
| O1W—Sr1—O2—Sr1i | −60.80 (11) | Sr1ii—Sr1—C6—O2 | 179.19 (16) |
| O4W—Sr1—O2—Sr1i | 67.43 (8) | O1W—Sr1—C6—O1 | 130.25 (19) |
| O2i—Sr1—O2—Sr1i | 0.0 | O4W—Sr1—C6—O1 | −65.27 (16) |
| O2W—Sr1—O2—Sr1i | −74.46 (7) | O2i—Sr1—C6—O1 | −140.24 (15) |
| O1ii—Sr1—O2—Sr1i | 148.35 (6) | O2W—Sr1—C6—O1 | 149.06 (15) |
| O3W—Sr1—O2—Sr1i | −145.30 (7) | O1ii—Sr1—C6—O1 | 8.45 (18) |
| O1—Sr1—O2—Sr1i | 142.62 (10) | O3W—Sr1—C6—O1 | 76.10 (15) |
| C6—Sr1—O2—Sr1i | 146.30 (18) | O2—Sr1—C6—O1 | −173.3 (2) |
| Sr1ii—Sr1—O2—Sr1i | 145.59 (6) | Sr1i—Sr1—C6—O1 | −149.89 (16) |
| C5—N1—C1—C2 | 0.3 (4) | Sr1ii—Sr1—C6—O1 | 5.87 (12) |
| N1—C1—C2—C3 | −0.4 (4) | C3—C4—C7—O3 | −0.7 (4) |
| N1—C1—C2—C6 | 177.0 (2) | C5—C4—C7—O3 | 177.5 (2) |
| C1—C2—C3—C4 | 0.2 (4) | C3—C4—C7—O4 | −178.6 (2) |
| C6—C2—C3—C4 | −177.1 (2) | C5—C4—C7—O4 | −0.4 (4) |
| H··· | ||||
| O1W—H1WA···O3ii | 0.83 | 1.92 | 2.744 (3) | 178 |
| O1W—H1WB···O3iv | 0.92 | 1.85 | 2.754 (3) | 168 |
| O2W—H2WA···O4iv | 0.86 | 1.90 | 2.747 (3) | 169 |
| O2W—H2WB···O4iii | 0.86 | 1.98 | 2.816 (3) | 162 |
| O3W—H3WA···O4v | 0.93 | 1.95 | 2.863 (3) | 168 |
| O3W—H3WB···O4Wii | 0.85 | 2.31 | 3.159 (4) | 175 |
| O4W—H4WA···N1vi | 0.83 | 1.92 | 2.739 (4) | 169 |
| O4W—H4WB···O4vii | 0.79 | 2.42 | 3.192 (4) | 164 |
| C3—H3A···O1Wii | 0.95 | 2.40 | 3.324 (4) | 164 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.83 | 1.92 | 2.744 (3) | 178 |
| O1 | 0.92 | 1.85 | 2.754 (3) | 168 |
| O2 | 0.86 | 1.90 | 2.747 (3) | 169 |
| O2 | 0.86 | 1.98 | 2.816 (3) | 162 |
| O3 | 0.93 | 1.95 | 2.863 (3) | 168 |
| O3 | 0.85 | 2.31 | 3.159 (4) | 175 |
| O4 | 0.83 | 1.92 | 2.739 (4) | 169 |
| O4 | 0.79 | 2.42 | 3.192 (4) | 164 |
| C3—H3 | 0.95 | 2.40 | 3.324 (4) | 164 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .