Literature DB >> 22714309

The symmetries of image formation by scattering. I. Theoretical framework.

Dimitrios Giannakis1, Peter Schwander, Abbas Ourmazd.   

Abstract

We perceive the world through images formed by scattering. The ability to interpret scattering data mathematically has opened to our scrutiny the constituents of matter, the building blocks of life, and the remotest corners of the universe. Here, we present an approach to image formation based on the symmetry properties of operations in three-dimensional space. Augmented with graph-theoretic means, this approach can recover the three-dimensional structure of objects from random snapshots of unknown orientation at four orders of magnitude higher complexity than previously demonstrated. This is critical for the burgeoning field of structure recovery by X-ray Free Electron Lasers, as well as the more established electron microscopic techniques, including cryo-electron microscopy of biological systems. In a subsequent paper, we demonstrate the recovery of structure and dynamics from experimental, ultralow-signal random sightings of systems with X-rays, electrons, and photons, with no orientational or timing information.

Entities:  

Year:  2012        PMID: 22714309     DOI: 10.1364/OE.20.012799

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  19 in total

1.  Trajectories of the ribosome as a Brownian nanomachine.

Authors:  Ali Dashti; Peter Schwander; Robert Langlois; Russell Fung; Wen Li; Ahmad Hosseinizadeh; Hstau Y Liao; Jesper Pallesen; Gyanesh Sharma; Vera A Stupina; Anne E Simon; Jonathan D Dinman; Joachim Frank; Abbas Ourmazd
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-24       Impact factor: 11.205

2.  Conformational landscape of a virus by single-particle X-ray scattering.

Authors:  Ahmad Hosseinizadeh; Ghoncheh Mashayekhi; Jeremy Copperman; Peter Schwander; Ali Dashti; Reyhaneh Sepehr; Russell Fung; Marius Schmidt; Chun Hong Yoon; Brenda G Hogue; Garth J Williams; Andrew Aquila; Abbas Ourmazd
Journal:  Nat Methods       Date:  2017-08-14       Impact factor: 28.547

3.  Reconstruction from limited single-particle diffraction data via simultaneous determination of state, orientation, intensity, and phase.

Authors:  Jeffrey J Donatelli; James A Sethian; Peter H Zwart
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

4.  The correlation of single-particle diffraction patterns as a continuous function of particle orientation.

Authors:  Andrew V Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

Review 5.  Emerging Themes in CryoEM─Single Particle Analysis Image Processing.

Authors:  Jose Luis Vilas; Jose Maria Carazo; Carlos Oscar S Sorzano
Journal:  Chem Rev       Date:  2022-07-04       Impact factor: 72.087

6.  Solving structure with sparse, randomly-oriented x-ray data.

Authors:  Hugh T Philipp; Kartik Ayyer; Mark W Tate; Veit Elser; Sol M Gruner
Journal:  Opt Express       Date:  2012-06-04       Impact factor: 3.894

Review 7.  Conformations of macromolecules and their complexes from heterogeneous datasets.

Authors:  P Schwander; R Fung; A Ourmazd
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

8.  Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Authors:  Ruslan P Kurta; Jeffrey J Donatelli; Chun Hong Yoon; Peter Berntsen; Johan Bielecki; Benedikt J Daurer; Hasan DeMirci; Petra Fromme; Max Felix Hantke; Filipe R N C Maia; Anna Munke; Carl Nettelblad; Kanupriya Pande; Hemanth K N Reddy; Jonas A Sellberg; Raymond G Sierra; Martin Svenda; Gijs van der Schot; Ivan A Vartanyants; Garth J Williams; P Lourdu Xavier; Andrew Aquila; Peter H Zwart; Adrian P Mancuso
Journal:  Phys Rev Lett       Date:  2017-10-12       Impact factor: 9.161

9.  Single-molecule imaging with longer X-ray laser pulses.

Authors:  Andrew V Martin; Justine K Corso; Carl Caleman; Nicusor Timneanu; Harry M Quiney
Journal:  IUCrJ       Date:  2015-10-21       Impact factor: 4.769

10.  High-resolution structure of viruses from random diffraction snapshots.

Authors:  A Hosseinizadeh; P Schwander; A Dashti; R Fung; R M D'Souza; A Ourmazd
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

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