Literature DB >> 22713231

Task-based evaluation of segmentation algorithms for diffusion-weighted MRI without using a gold standard.

Abhinav K Jha1, Matthew A Kupinski, Jeffrey J Rodríguez, Renu M Stephen, Alison T Stopeck.   

Abstract

In many studies, the estimation of the apparent diffusion coefficient (ADC) of lesions in visceral organs in diffusion-weighted (DW) magnetic resonance images requires an accurate lesion-segmentation algorithm. To evaluate these lesion-segmentation algorithms, region-overlap measures are used currently. However, the end task from the DW images is accurate ADC estimation, and the region-overlap measures do not evaluate the segmentation algorithms on this task. Moreover, these measures rely on the existence of gold-standard segmentation of the lesion, which is typically unavailable. In this paper, we study the problem of task-based evaluation of segmentation algorithms in DW imaging in the absence of a gold standard. We first show that using manual segmentations instead of gold-standard segmentations for this task-based evaluation is unreliable. We then propose a method to compare the segmentation algorithms that does not require gold-standard or manual segmentation results. The no-gold-standard method estimates the bias and the variance of the error between the true ADC values and the ADC values estimated using the automated segmentation algorithm. The method can be used to rank the segmentation algorithms on the basis of both the ensemble mean square error and precision. We also propose consistency checks for this evaluation technique.

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Year:  2012        PMID: 22713231      PMCID: PMC3932666          DOI: 10.1088/0031-9155/57/13/4425

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  44 in total

1.  Fast, iterative image reconstruction for MRI in the presence of field inhomogeneities.

Authors:  Bradley P Sutton; Douglas C Noll; Jeffrey A Fessler
Journal:  IEEE Trans Med Imaging       Date:  2003-02       Impact factor: 10.048

Review 2.  Basic principles of diffusion-weighted imaging.

Authors:  Roland Bammer
Journal:  Eur J Radiol       Date:  2003-03       Impact factor: 3.528

3.  Evaluation of Segmentation algorithms for Medical Imaging.

Authors:  Aaron Fenster; Bernard Chiu
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2005

4.  Receiver operator characteristic (ROC) analysis without truth.

Authors:  R M Henkelman; I Kay; M J Bronskill
Journal:  Med Decis Making       Date:  1990 Jan-Mar       Impact factor: 2.583

5.  Unbiased segmentation of diffusion-weighted magnetic resonance images of the brain using iterative clustering.

Authors:  Andreas Hadjiprocopis; Waqar Rashid; Paul S Tofts
Journal:  Magn Reson Imaging       Date:  2005-10-03       Impact factor: 2.546

6.  A Clustering Algorithm for Liver Lesion Segmentation of Diffusion-Weighted MR Images.

Authors:  Abhinav K Jha; Jeffrey J Rodríguez; Renu M Stephen; Alison T Stopeck
Journal:  Proc IEEE Southwest Symp Image Anal Interpret       Date:  2010-05-23

7.  Evaluating segmentation algorithms for diffusion-weighted MR images: a task-based approach.

Authors:  Abhinav K Jha; Matthew A Kupinski; Jeffrey J Rodríguez; Renu M Stephen; Alison T Stopeck
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-02-27

Review 8.  A review of segmentation methods in short axis cardiac MR images.

Authors:  Caroline Petitjean; Jean-Nicolas Dacher
Journal:  Med Image Anal       Date:  2010-12-24       Impact factor: 8.545

9.  Liver tumor volume estimation by semi-automatic segmentation method.

Authors:  Rui Lu; Pina Marziliano; Choon Hua Thng
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2005

10.  Comparing cardiac ejection fraction estimation algorithms without a gold standard.

Authors:  Matthew A Kupinski; John W Hoppin; Joshua Krasnow; Seth Dahlberg; Jeffrey A Leppo; Michael A King; Eric Clarkson; Harrison H Barrett
Journal:  Acad Radiol       Date:  2006-03       Impact factor: 3.173

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  10 in total

1.  Factors affecting the normality of channel outputs of channelized model observers: an investigation using realistic myocardial perfusion SPECT images.

Authors:  Fatma E A Elshahaby; Michael Ghaly; Abhinav K Jha; Eric C Frey
Journal:  J Med Imaging (Bellingham)       Date:  2016-01-28

2.  Bayesian framework inspired no-reference region-of-interest quality measure for brain MRI images.

Authors:  Michael Osadebey; Marius Pedersen; Douglas Arnold; Katrina Wendel-Mitoraj
Journal:  J Med Imaging (Bellingham)       Date:  2017-06-13

3.  No-gold-standard evaluation of image-acquisition methods using patient data.

Authors:  Abhinav K Jha; Eric Frey
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-03-10

4.  A no-gold-standard technique for objective assessment of quantitative nuclear-medicine imaging methods.

Authors:  Abhinav K Jha; Brian Caffo; Eric C Frey
Journal:  Phys Med Biol       Date:  2016-03-16       Impact factor: 3.609

5.  Objective evaluation of reconstruction methods for quantitative SPECT imaging in the absence of ground truth.

Authors:  Abhinav K Jha; Na Song; Brian Caffo; Eric C Frey
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-04-13

6.  Practical no-gold-standard evaluation framework for quantitative imaging methods: application to lesion segmentation in positron emission tomography.

Authors:  Abhinav K Jha; Esther Mena; Brian Caffo; Saeed Ashrafinia; Arman Rahmim; Eric Frey; Rathan M Subramaniam
Journal:  J Med Imaging (Bellingham)       Date:  2017-03-03

7.  Diffusion MRI with Semi-Automated Segmentation Can Serve as a Restricted Predictive Biomarker of the Therapeutic Response of Liver Metastasis.

Authors:  Renu M Stephen; Abhinav K Jha; Denise J Roe; Theodore P Trouard; Jean-Philippe Galons; Matthew A Kupinski; Georgette Frey; Haiyan Cui; Scott Squire; Mark D Pagel; Jeffrey J Rodriguez; Robert J Gillies; Alison T Stopeck
Journal:  Magn Reson Imaging       Date:  2015-08-15       Impact factor: 2.546

8.  A maximum-likelihood method to estimate a single ADC value of lesions using diffusion MRI.

Authors:  Abhinav K Jha; Jeffrey J Rodríguez; Alison T Stopeck
Journal:  Magn Reson Med       Date:  2016-01-07       Impact factor: 4.668

9.  Designing image segmentation studies: Statistical power, sample size and reference standard quality.

Authors:  Eli Gibson; Yipeng Hu; Henkjan J Huisman; Dean C Barratt
Journal:  Med Image Anal       Date:  2017-07-22       Impact factor: 8.545

10.  A Bayesian approach to tissue-fraction estimation for oncological PET segmentation.

Authors:  Ziping Liu; Joyce C Mhlanga; Richard Laforest; Paul-Robert Derenoncourt; Barry A Siegel; Abhinav K Jha
Journal:  Phys Med Biol       Date:  2021-06-14       Impact factor: 3.609

  10 in total

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