Literature DB >> 22710184

Rewiring translation - Genetic code expansion and its applications.

Heinz Neumann1.   

Abstract

With few minor variations, the genetic code is universal to all forms of life on our planet. It is difficult to imagine that one day organisms might exist that use an entirely different code to translate the information of their genome. Recent developments in the field of synthetic biology, however, have opened the gate to their creation. The genetic code of several organisms has been expanded by the heterologous expression of evolved aminoacyl-tRNA synthetase/tRNA(CUA) pairs that mediate the incorporation of unnatural amino acids in response to amber codons. These UAAs introduce exciting new features into proteins, such as spectroscopic probes, UV-inducible crosslinkers, and functional groups for bioorthogonal conjugations or posttranslational modifications. Orthogonal ribosomes provide a parallel translational machinery in Escherichia coli that has lost its evolutionary constraints. Evolved variants of these ribosomes translate amber or quadruplet codons with massively enhanced efficiency. Here, I review these recent developments emphasizing their tremendous potential to facilitate biochemical and cell biological studies.
Copyright © 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22710184     DOI: 10.1016/j.febslet.2012.02.002

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  30 in total

1.  Improved Incorporation of Noncanonical Amino Acids by an Engineered tRNA(Tyr) Suppressor.

Authors:  Benjamin J Rauch; Joseph J Porter; Ryan A Mehl; John J Perona
Journal:  Biochemistry       Date:  2016-01-08       Impact factor: 3.162

2.  Genetically Incorporating Two Distinct Post-translational Modifications into One Protein Simultaneously.

Authors:  Sumana Venkat; Jourdan Sturges; Alleigh Stahman; Caroline Gregory; Qinglei Gan; Chenguang Fan
Journal:  ACS Synth Biol       Date:  2018-01-17       Impact factor: 5.110

Review 3.  Physiological and Transcriptional Responses of Different Industrial Microbes at Near-Zero Specific Growth Rates.

Authors:  Onur Ercan; Markus M M Bisschops; Wout Overkamp; Thomas R Jørgensen; Arthur F Ram; Eddy J Smid; Jack T Pronk; Oscar P Kuipers; Pascale Daran-Lapujade; Michiel Kleerebezem
Journal:  Appl Environ Microbiol       Date:  2015-06-05       Impact factor: 4.792

4.  Design specifications for cellular regulation.

Authors:  David C Krakauer; Lydia Müller; Sonja J Prohaska; Peter F Stadler
Journal:  Theory Biosci       Date:  2016-11-18       Impact factor: 1.919

5.  A Robust and Quantitative Reporter System To Evaluate Noncanonical Amino Acid Incorporation in Yeast.

Authors:  Jessica T Stieglitz; Haixing P Kehoe; Ming Lei; James A Van Deventer
Journal:  ACS Synth Biol       Date:  2018-09-04       Impact factor: 5.110

6.  Direct Enzymatic Synthesis of a Deep-Blue Fluorescent Noncanonical Amino Acid from Azulene and Serine.

Authors:  Ella J Watkins; Patrick J Almhjell; Frances H Arnold
Journal:  Chembiochem       Date:  2019-11-18       Impact factor: 3.164

7.  Biochemical Characterization of the Lysine Acetylation of Tyrosyl-tRNA Synthetase in Escherichia coli.

Authors:  Sumana Venkat; Caroline Gregory; Qinglei Gan; Chenguang Fan
Journal:  Chembiochem       Date:  2017-08-15       Impact factor: 3.164

8.  Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion.

Authors:  Patrick O'Donoghue; Laure Prat; Ilka U Heinemann; Jiqiang Ling; Keturah Odoi; Wenshe R Liu; Dieter Söll
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

Review 9.  Incorporation of Non-Canonical Amino Acids.

Authors:  Lilia Leisle; Francis Valiyaveetil; Ryan A Mehl; Christopher A Ahern
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

10.  Enhanced phosphoserine insertion during Escherichia coli protein synthesis via partial UAG codon reassignment and release factor 1 deletion.

Authors:  Ilka U Heinemann; Alexis J Rovner; Hans R Aerni; Svetlana Rogulina; Laura Cheng; William Olds; Jonathan T Fischer; Dieter Söll; Farren J Isaacs; Jesse Rinehart
Journal:  FEBS Lett       Date:  2012-09-13       Impact factor: 4.124

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