Literature DB >> 22691788

Identification, crystallization and preliminary X-ray diffraction analysis of esterase A from Caulobacter crescentus CB15, a family VIII lipolytic enzyme.

Bum Han Ryu1, Tri Duc Ngo, Eunjin Jang, Sungsoo Kim, Hansol Ju, Kyeong Kyu Kim, T Doohun Kim.   

Abstract

The structures and functions of family VIII lipolytic enzymes, which have moderate sequence identity to class C β-lactamases and penicillin-binding proteins, are largely unknown. Here, the X-ray crystallographic study of a family VIII esterase from Caulobacter crescentus CB15 (CcEstA) is described. Sequence analysis revealed that CcEstA has a conserved serine residue within the S-X-X-K motif which acts as a catalytic nucleophile. Recombinant protein containing an N-terminal His tag was expressed in Escherichia coli and purified to homogeneity. Functional studies showed that CcEstA acts on α- and β-naphthyl acetate as substrates. In addition, it can catalyze the hydrolysis of ketoprofen ethyl ester, a highly useful product in industrial applications. CcEstA was crystallized using a solution consisting of 1.0 M potassium/sodium tartrate, 0.1 M imidazole pH 8.0, 0.2 M NaCl, and X-ray diffraction data were collected to a resolution of 1.62 Å with an R(merge) of 9.4%. The crystals of CcEstA belonged to space group C222(1), with unit-cell parameters a = 172.23, b = 176.68, c = 47.93 Å. Structure determination is in progress.

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Year:  2012        PMID: 22691788      PMCID: PMC3374513          DOI: 10.1107/S1744309112009992

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  39 in total

1.  Bacterial lipolytic enzymes: classification and properties.

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Review 3.  Microbial carboxyl esterases: classification, properties and application in biocatalysis.

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Journal:  Curr Protein Pept Sci       Date:  2000-09       Impact factor: 3.272

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Journal:  Protein Eng       Date:  1992-04

6.  CD-Search: protein domain annotations on the fly.

Authors:  Aron Marchler-Bauer; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

7.  EstB from Burkholderia gladioli: a novel esterase with a beta-lactamase fold reveals steric factors to discriminate between esterolytic and beta-lactam cleaving activity.

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Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

8.  A novel esterase from Burkholderia gladioli which shows high deacetylation activity on cephalosporins is related to beta-lactamases and DD-peptidases.

Authors:  E I Petersen; G Valinger; B Sölkner; G Stubenrauch; H Schwab
Journal:  J Biotechnol       Date:  2001-07-26       Impact factor: 3.307

9.  Cloning, expression, and characterization of a lipolytic enzyme gene (lip8) from Pseudomonas aeruginosa LST-03.

Authors:  Hiroyasu Ogino; Takashi Mimitsuka; Toshiaki Muto; Miharu Matsumura; Masahiro Yasuda; Kosaku Ishimi; Haruo Ishikawa
Journal:  J Mol Microbiol Biotechnol       Date:  2004

10.  Molecular analysis of an esterase-encoding gene from a lipolytic psychrotrophic pseudomonad.

Authors:  D B McKay; M P Jennings; E A Godfrey; I C MacRae; P J Rogers; I R Beacham
Journal:  J Gen Microbiol       Date:  1992-04
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  4 in total

1.  Crystallization and preliminary X-ray analysis of a highly stable novel SGNH hydrolase (Est24) from Sinorhizobium meliloti.

Authors:  Bum Han Ryu; Duy Duc Nguyen; Tri Duc Ngo; Changsuk Oh; Ramesh Pandian; Kyeong Kyu Kim; T Doohun Kim
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-21       Impact factor: 1.056

2.  Characterization, crystallization and preliminary X-ray diffraction analysis of an (S)-specific esterase (pfEstA) from Pseudomonas fluorescens KCTC 1767: enantioselectivity for potential industrial applications.

Authors:  Seulgi Kim; Tri Duc Ngo; Kyeong Kyu Kim; T Doohun Kim
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-10-30

3.  Crystallization and preliminary X-ray analysis of a novel type of lipolytic hydrolase from Bacillus licheniformis.

Authors:  Hansol Ju; Ramesh Pandian; Kyungmin Kim; Kyeong Kyu Kim; T Doohun Kim
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-03-25       Impact factor: 1.056

4.  Biochemical and Structural Analysis of a Novel Esterase from Caulobacter crescentus related to Penicillin-Binding Protein (PBP).

Authors:  Bum Han Ryu; Tri Duc Ngo; Wanki Yoo; Sojeong Lee; Boo-Young Kim; Euijoo Lee; Kyeong Kyu Kim; T Doohun Kim
Journal:  Sci Rep       Date:  2016-12-01       Impact factor: 4.379

  4 in total

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