Literature DB >> 27844430

High-Resolution "Fleezers": Dual-Trap Optical Tweezers Combined with Single-Molecule Fluorescence Detection.

Kevin D Whitley1, Matthew J Comstock2, Yann R Chemla3.   

Abstract

Recent advances in optical tweezers have greatly expanded their measurement capabilities. A new generation of hybrid instrument that combines nanomechanical manipulation with fluorescence detection-fluorescence optical tweezers, or "fleezers"-is providing a powerful approach to study complex macromolecular dynamics. Here, we describe a combined high-resolution optical trap/confocal fluorescence microscope that can simultaneously detect sub-nanometer displacements, sub-piconewton forces, and single-molecule fluorescence signals. The primary technical challenge to these hybrid instruments is how to combine both measurement modalities without sacrificing the sensitivity of either one. We present general design principles to overcome this challenge and provide detailed, step-by-step instructions to implement them in the construction and alignment of the instrument. Lastly, we present a set of protocols to perform a simple, proof-of-principle experiment that highlights the instrument capabilities.

Entities:  

Keywords:  Confocal microscopy; FRET; Fleezers; Förster resonance energy transfer; Optical trapping; Optical tweezers; Single-molecule fluorescence

Mesh:

Substances:

Year:  2017        PMID: 27844430      PMCID: PMC5541766          DOI: 10.1007/978-1-4939-6421-5_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  45 in total

1.  Three-dimensional high-resolution particle tracking for optical tweezers by forward scattered light.

Authors:  A Pralle; M Prummer; E L Florin; E H Stelzer; J K Hörber
Journal:  Microsc Res Tech       Date:  1999-03-01       Impact factor: 2.769

2.  Simultaneous, coincident optical trapping and single-molecule fluorescence.

Authors:  Matthew J Lang; Polly M Fordyce; Anita M Engh; Keir C Neuman; Steven M Block
Journal:  Nat Methods       Date:  2004-10-21       Impact factor: 28.547

3.  Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins.

Authors:  Michael T Woodside; William M Behnke-Parks; Kevan Larizadeh; Kevin Travers; Daniel Herschlag; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

4.  Nonblinking and long-lasting single-molecule fluorescence imaging.

Authors:  Ivan Rasnik; Sean A McKinney; Taekjip Ha
Journal:  Nat Methods       Date:  2006-10-01       Impact factor: 28.547

5.  Interference model for back-focal-plane displacement detection in optical tweezers.

Authors:  F Gittes; C F Schmidt
Journal:  Opt Lett       Date:  1998-01-01       Impact factor: 3.776

6.  Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction.

Authors:  Sungchul Hohng; Ruobo Zhou; Michelle K Nahas; Jin Yu; Klaus Schulten; David M J Lilley; Taekjip Ha
Journal:  Science       Date:  2007-10-12       Impact factor: 47.728

7.  Laminar flow cells for single-molecule studies of DNA-protein interactions.

Authors:  Laurence R Brewer; Piero R Bianco
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

8.  An improved optical tweezers assay for measuring the force generation of single kinesin molecules.

Authors:  Matthew P Nicholas; Lu Rao; Arne Gennerich
Journal:  Methods Mol Biol       Date:  2014

Review 9.  Visualizing protein-DNA interactions at the single-molecule level.

Authors:  Jovencio Hilario; Stephen C Kowalczykowski
Journal:  Curr Opin Chem Biol       Date:  2009-11-27       Impact factor: 8.822

10.  Micromanipulation by "multiple" optical traps created by a single fast scanning trap integrated with the bilateral confocal scanning laser microscope.

Authors:  K Visscher; G J Brakenhoff; J J Krol
Journal:  Cytometry       Date:  1993
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  12 in total

1.  High-resolution and high-accuracy topographic and transcriptional maps of the nucleosome barrier.

Authors:  Zhijie Chen; Ronen Gabizon; Aidan I Brown; Antony Lee; Aixin Song; César Díaz-Celis; Craig D Kaplan; Elena F Koslover; Tingting Yao; Carlos Bustamante
Journal:  Elife       Date:  2019-07-31       Impact factor: 8.140

2.  Extreme mechanical diversity of human telomeric DNA revealed by fluorescence-force spectroscopy.

Authors:  Jaba Mitra; Monika A Makurath; Thuy T M Ngo; Alice Troitskaia; Yann R Chemla; Taekjip Ha
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-03       Impact factor: 11.205

Review 3.  Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain.

Authors:  Philippe C Baveye; Wilfred Otten; Alexandra Kravchenko; María Balseiro-Romero; Éléonore Beckers; Maha Chalhoub; Christophe Darnault; Thilo Eickhorst; Patricia Garnier; Simona Hapca; Serkan Kiranyaz; Olivier Monga; Carsten W Mueller; Naoise Nunan; Valérie Pot; Steffen Schlüter; Hannes Schmidt; Hans-Jörg Vogel
Journal:  Front Microbiol       Date:  2018-08-27       Impact factor: 5.640

4.  High-Resolution Optical Tweezers Combined With Single-Molecule Confocal Microscopy.

Authors:  K D Whitley; M J Comstock; Y R Chemla
Journal:  Methods Enzymol       Date:  2016-12-14       Impact factor: 1.600

5.  Co-temporal Force and Fluorescence Measurements Reveal a Ribosomal Gear Shift Mechanism of Translation Regulation by Structured mRNAs.

Authors:  Varsha P Desai; Filipp Frank; Antony Lee; Maurizio Righini; Laura Lancaster; Harry F Noller; Ignacio Tinoco; Carlos Bustamante
Journal:  Mol Cell       Date:  2019-08-27       Impact factor: 17.970

6.  POTATO: Automated pipeline for batch analysis of optical tweezers data.

Authors:  Stefan Buck; Lukas Pekarek; Neva Caliskan
Journal:  Biophys J       Date:  2022-06-30       Impact factor: 3.699

7.  Force determination in lateral magnetic tweezers combined with TIRF microscopy.

Authors:  J Madariaga-Marcos; S Hormeño; C L Pastrana; G L M Fisher; M S Dillingham; F Moreno-Herrero
Journal:  Nanoscale       Date:  2018-03-01       Impact factor: 7.790

Review 8.  History of DNA Helicases.

Authors:  Robert M Brosh; Steven W Matson
Journal:  Genes (Basel)       Date:  2020-02-27       Impact factor: 4.096

9.  Switch-like control of helicase processivity by single-stranded DNA binding protein.

Authors:  Barbara Stekas; Steve Yeo; Alice Troitskaia; Masayoshi Honda; Sei Sho; Maria Spies; Yann R Chemla
Journal:  Elife       Date:  2021-03-19       Impact factor: 8.140

10.  Observation of processive telomerase catalysis using high-resolution optical tweezers.

Authors:  Eric M Patrick; Joseph D Slivka; Bramyn Payne; Matthew J Comstock; Jens C Schmidt
Journal:  Nat Chem Biol       Date:  2020-02-17       Impact factor: 15.040

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