Literature DB >> 22673905

Structure and mechanism of a canonical poly(ADP-ribose) glycohydrolase.

Mark S Dunstan1, Eva Barkauskaite, Pierre Lafite, Claire E Knezevic, Amy Brassington, Marijan Ahel, Paul J Hergenrother, David Leys, Ivan Ahel.   

Abstract

Poly(ADP-ribosyl)ation is a reversible post-translational protein modification involved in the regulation of a number of cellular processes including DNA repair, chromatin structure, mitosis, transcription, checkpoint activation, apoptosis and asexual development. The reversion of poly(ADP-ribosyl)ation is catalysed by poly(ADP-ribose) (PAR) glycohydrolase (PARG), which specifically targets the unique PAR (1''-2') ribose-ribose bonds. Here we report the structure and mechanism of the first canonical PARG from the protozoan Tetrahymena thermophila. In addition, we reveal the structure of T. thermophila PARG in a complex with a novel rhodanine-containing mammalian PARG inhibitor RBPI-3. Our data demonstrate that the protozoan PARG represents a good model for human PARG and is therefore likely to prove useful in guiding structure-based discovery of new classes of PARG inhibitors.

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Year:  2012        PMID: 22673905     DOI: 10.1038/ncomms1889

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  26 in total

1.  Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation.

Authors:  Araz Jakalian; David B Jack; Christopher I Bayly
Journal:  J Comput Chem       Date:  2002-12       Impact factor: 3.376

2.  Loss of poly(ADP-ribose) glycohydrolase causes progressive neurodegeneration in Drosophila melanogaster.

Authors:  Shuji Hanai; Masayuki Kanai; Sayaka Ohashi; Keiji Okamoto; Mitsunori Yamada; Hitoshi Takahashi; Masanao Miwa
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-15       Impact factor: 11.205

3.  Failure to degrade poly(ADP-ribose) causes increased sensitivity to cytotoxicity and early embryonic lethality.

Authors:  David W Koh; Ann M Lawler; Marc F Poitras; Masayuki Sasaki; Sigrid Wattler; Michael C Nehls; Tobias Stöger; Guy G Poirier; Valina L Dawson; Ted M Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-10       Impact factor: 11.205

4.  Identification of three critical acidic residues of poly(ADP-ribose) glycohydrolase involved in catalysis: determining the PARG catalytic domain.

Authors:  Chandra N Patel; David W Koh; Myron K Jacobson; Marcos A Oliveira
Journal:  Biochem J       Date:  2005-06-01       Impact factor: 3.857

5.  Identification of an inhibitor binding site of poly(ADP-ribose) glycohydrolase.

Authors:  David W Koh; Chandra N Patel; Sushma Ramsinghani; James T Slama; Marcos A Oliveira; Myron K Jacobson
Journal:  Biochemistry       Date:  2003-05-06       Impact factor: 3.162

6.  Isolation and characterization of the cDNA encoding bovine poly(ADP-ribose) glycohydrolase.

Authors:  W Lin; J C Amé; N Aboul-Ela; E L Jacobson; M K Jacobson
Journal:  J Biol Chem       Date:  1997-05-02       Impact factor: 5.157

7.  Poly(ADP-ribose)-binding zinc finger motifs in DNA repair/checkpoint proteins.

Authors:  Ivan Ahel; Dragana Ahel; Takahiro Matsusaka; Allison J Clark; Jonathon Pines; Simon J Boulton; Stephen C West
Journal:  Nature       Date:  2008-01-03       Impact factor: 49.962

8.  tej defines a role for poly(ADP-ribosyl)ation in establishing period length of the arabidopsis circadian oscillator.

Authors:  Satchidananda Panda; Guy G Poirier; Steve A Kay
Journal:  Dev Cell       Date:  2002-07       Impact factor: 12.270

9.  The structure and catalytic mechanism of a poly(ADP-ribose) glycohydrolase.

Authors:  Dea Slade; Mark S Dunstan; Eva Barkauskaite; Ria Weston; Pierre Lafite; Neil Dixon; Marijan Ahel; David Leys; Ivan Ahel
Journal:  Nature       Date:  2011-09-04       Impact factor: 49.962

Review 10.  The expanding field of poly(ADP-ribosyl)ation reactions. 'Protein Modifications: Beyond the Usual Suspects' Review Series.

Authors:  Antoinette Hakmé; Heng-Kuan Wong; Françoise Dantzer; Valérie Schreiber
Journal:  EMBO Rep       Date:  2008-10-17       Impact factor: 8.807

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  40 in total

1.  Monitoring Poly(ADP-ribosyl)glycohydrolase Activity with a Continuous Fluorescent Substrate.

Authors:  Bryon S Drown; Tomohiro Shirai; Johannes Gregor Matthias Rack; Ivan Ahel; Paul J Hergenrother
Journal:  Cell Chem Biol       Date:  2018-10-11       Impact factor: 8.116

Review 2.  Macro domains as metabolite sensors on chromatin.

Authors:  Melanija Posavec; Gyula Timinszky; Marcus Buschbeck
Journal:  Cell Mol Life Sci       Date:  2013-03-03       Impact factor: 9.261

3.  Family-wide analysis of poly(ADP-ribose) polymerase activity.

Authors:  Sejal Vyas; Ivan Matic; Lilen Uchima; Jenny Rood; Roko Zaja; Ronald T Hay; Ivan Ahel; Paul Chang
Journal:  Nat Commun       Date:  2014-07-21       Impact factor: 14.919

Review 4.  The rise and fall of poly(ADP-ribose): An enzymatic perspective.

Authors:  John M Pascal; Tom Ellenberger
Journal:  DNA Repair (Amst)       Date:  2015-05-01

5.  Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases.

Authors:  Florian Rosenthal; Karla L H Feijs; Emilie Frugier; Mario Bonalli; Alexandra H Forst; Ralph Imhof; Hans C Winkler; David Fischer; Amedeo Caflisch; Paul O Hassa; Bernhard Lüscher; Michael O Hottiger
Journal:  Nat Struct Mol Biol       Date:  2013-03-10       Impact factor: 15.369

Review 6.  PARP-1 mechanism for coupling DNA damage detection to poly(ADP-ribose) synthesis.

Authors:  Marie-France Langelier; John M Pascal
Journal:  Curr Opin Struct Biol       Date:  2013-01-16       Impact factor: 6.809

Review 7.  Poly(ADP-ribosyl)ation in regulation of chromatin structure and the DNA damage response.

Authors:  Michael Tallis; Rosa Morra; Eva Barkauskaite; Ivan Ahel
Journal:  Chromosoma       Date:  2013-10-27       Impact factor: 4.316

8.  Unrestrained poly-ADP-ribosylation provides insights into chromatin regulation and human disease.

Authors:  Evgeniia Prokhorova; Thomas Agnew; Anne R Wondisford; Michael Tellier; Nicole Kaminski; Danique Beijer; James Holder; Josephine Groslambert; Marcin J Suskiewicz; Kang Zhu; Julia M Reber; Sarah C Krassnig; Luca Palazzo; Shona Murphy; Michael L Nielsen; Aswin Mangerich; Dragana Ahel; Jonathan Baets; Roderick J O'Sullivan; Ivan Ahel
Journal:  Mol Cell       Date:  2021-05-20       Impact factor: 17.970

9.  Host cell poly(ADP-ribose) glycohydrolase is crucial for Trypanosoma cruzi infection cycle.

Authors:  Salomé C Vilchez Larrea; Mariana Schlesinger; María L Kevorkian; Mirtha M Flawiá; Guillermo D Alonso; Silvia H Fernández Villamil
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240

10.  Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.

Authors:  Reza Sharifi; Rosa Morra; C Denise Appel; Michael Tallis; Barry Chioza; Gytis Jankevicius; Michael A Simpson; Ivan Matic; Ege Ozkan; Barbara Golia; Matthew J Schellenberg; Ria Weston; Jason G Williams; Marianna N Rossi; Hamid Galehdari; Juno Krahn; Alexander Wan; Richard C Trembath; Andrew H Crosby; Dragana Ahel; Ron Hay; Andreas G Ladurner; Gyula Timinszky; R Scott Williams; Ivan Ahel
Journal:  EMBO J       Date:  2013-03-12       Impact factor: 11.598

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