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Literature DB >> 22673064

Directed evolution: an evolving and enabling synthetic biology tool.

Abstract

Synthetic biology, with its goal of designing biological entities for wide-ranging purposes, remains a field of intensive research interest. However, the vast complexity of biological systems has heretofore rendered rational design prohibitively difficult. As a result, directed evolution remains a valuable tool for synthetic biology, enabling the identification of desired functionalities from large libraries of variants. This review highlights the most recent advances in the use of directed evolution in synthetic biology, focusing on new techniques and applications at the pathway and genome scale.

Entities: Chemical Disease Gene Species

Mesh：

Year: 2012 PMID： 22673064 PMCID： PMC3424333 DOI： 10.1016/j.cbpa.2012.05.186

Source DB: PubMed Journal: Curr Opin Chem Biol ISSN： 1367-5931 Impact factor: 8.822

53 in total

1. Synthetic chromosome arms function in yeast and generate phenotypic diversity by design.

Authors: Jessica S Dymond; Sarah M Richardson; Candice E Coombes; Timothy Babatz; Héloïse Muller; Narayana Annaluru; William J Blake; Joy W Schwerzmann; Junbiao Dai; Derek L Lindstrom; Annabel C Boeke; Daniel E Gottschling; Srinivasan Chandrasegaran; Joel S Bader; Jef D Boeke
Journal: Nature Date: 2011-09-14 Impact factor: 49.962

2. A de novo protein binding pair by computational design and directed evolution.

Authors: John Karanicolas; Jacob E Corn; Irwin Chen; Lukasz A Joachimiak; Orly Dym; Sun H Peck; Shira Albeck; Tamar Unger; Wenxin Hu; Gaohua Liu; Scott Delbecq; Gaetano T Montelione; Clint P Spiegel; David R Liu; David Baker
Journal: Mol Cell Date: 2011-03-31 Impact factor: 17.970

3. Reiterative Recombination for the in vivo assembly of libraries of multigene pathways.

Authors: Laura M Wingler; Virginia W Cornish
Journal: Proc Natl Acad Sci U S A Date: 2011-08-26 Impact factor: 11.205

4. Modularity of MAP kinases allows deformation of their signalling pathways.

Authors: Areez Mody; Joan Weiner; Sharad Ramanathan
Journal: Nat Cell Biol Date: 2009-03-22 Impact factor: 28.824

5. Directed evolution of LuxI for enhanced OHHL production.

Authors: Pavan Kumar Reddy Kambam; Daniel J Sayut; Yan Niu; Dawn T Eriksen; Lianhong Sun
Journal: Biotechnol Bioeng Date: 2008-10-01 Impact factor: 4.530

6. Programming cells by multiplex genome engineering and accelerated evolution.

Authors: Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal: Nature Date: 2009-07-26 Impact factor: 49.962

Review 7. Engineering multicellular systems by cell-cell communication.

Authors: Anand Pai; Yu Tanouchi; Cynthia H Collins; Lingchong You
Journal: Curr Opin Biotechnol Date: 2009-09-03 Impact factor: 9.740

8. A nucleoside kinase as a dual selector for genetic switches and circuits.

Authors: Yohei Tashiro; Hiroki Fukutomi; Kei Terakubo; Kyoichi Saito; Daisuke Umeno
Journal: Nucleic Acids Res Date: 2010-11-09 Impact factor: 16.971

9. Evolved orthogonal ribosomes enhance the efficiency of synthetic genetic code expansion.

Authors: Kaihang Wang; Heinz Neumann; Sew Y Peak-Chew; Jason W Chin
Journal: Nat Biotechnol Date: 2007-06-24 Impact factor: 54.908

10. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors: Zengyi Shao; Hua Zhao; Huimin Zhao
Journal: Nucleic Acids Res Date: 2008-12-12 Impact factor: 16.971

22 in total

Review 1. Systems strategies for developing industrial microbial strains.

Authors: Sang Yup Lee; Hyun Uk Kim
Journal: Nat Biotechnol Date: 2015-10 Impact factor: 54.908

2. Thirty-degree shift in optimum temperature of a thermophilic lipase by a single-point mutation: effect of serine to threonine mutation on structural flexibility.

Authors: Monika Sharma; Rakesh Kumar; Ranvir Singh; Jagdeep Kaur
Journal: Mol Cell Biochem Date: 2017-02-11 Impact factor: 3.396

Review 3. Directed evolution combined with synthetic biology strategies expedite semi-rational engineering of genes and genomes.

Authors: Zhen Kang; Junli Zhang; Peng Jin; Sen Yang
Journal: Bioengineered Date: 2015-01-26 Impact factor: 3.269

4. Precise and reliable gene expression via standard transcription and translation initiation elements.

Authors: Vivek K Mutalik; Joao C Guimaraes; Guillaume Cambray; Colin Lam; Marc Juul Christoffersen; Quynh-Anh Mai; Andrew B Tran; Morgan Paull; Jay D Keasling; Adam P Arkin; Drew Endy
Journal: Nat Methods Date: 2013-03-10 Impact factor: 28.547

5. Physical constraints on biological integral control design for homeostasis and sensory adaptation.

Authors: Jordan Ang; David R McMillen
Journal: Biophys J Date: 2013-01-22 Impact factor: 4.033

6. Functional Site Discovery in a Sulfur Metabolism Enzyme by Using Directed Evolution.

Authors: Hanumantharao Paritala; Prakash B Palde; Kate S Carroll
Journal: Chembiochem Date: 2016-08-12 Impact factor: 3.164

7. Directed Evolution: Past, Present and Future.

Authors: Ryan E Cobb; Ran Chao; Huimin Zhao
Journal: AIChE J Date: 2013-05 Impact factor: 3.993

Review 8. Protein engineering for metabolic engineering: current and next-generation tools.

Authors: Ryan J Marcheschi; Luisa S Gronenberg; James C Liao
Journal: Biotechnol J Date: 2013-04-16 Impact factor: 4.677

9. Kinetic characterization and structure analysis of an altered polyol dehydrogenase with d-lactate dehydrogenase activity.

Authors: Diane Chauliac; Qingzhao Wang; Franz J St John; Grace Jones; Jason C Hurlbert; Lonnie O Ingram; Keelnatham T Shanmugam
Journal: Protein Sci Date: 2020-10-24 Impact factor: 6.725

Review 10. Protein design for pathway engineering.

Authors: Dawn T Eriksen; Jiazhang Lian; Huimin Zhao
Journal: J Struct Biol Date: 2013-04-01 Impact factor: 2.867