Literature DB >> 20099799

Theoretical analysis of the resonance assisted hydrogen bond based on the combined extended transition state method and natural orbitals for chemical valence scheme.

Rafał Kurczab1, Mariusz P Mitoraj, Artur Michalak, Tom Ziegler.   

Abstract

We have analyzed hydrogen bonding in a number of species, containing from two to four hydrogen bonds. The examples were chosen in such a way that they would enable us to examine three different hydrogen bonds involving OH-O, NH-O, and NH-N. A common feature of the investigated systems is that they all are expected to exhibit resonance assisted hydrogen bonding (RAHB) in the electronic pi-framework. Our analysis was based on a recently developed method that combines the extended transition state scheme with the theory of natural orbitals for chemical valence (ETS-NOCV). We find that hydrogen bonding is associated with charge rearrangement in both the electronic sigma-framework (Deltarho(sigma)) and the electronic pi-framework (Deltarho(pi)). However the stabilization due to Deltarho(sigma) is four times as important as the stabilization (RAHB) due to Deltarho(pi). Stabilization due to the electrostatic interaction (DeltaE(elstat)) between the two monomers that are brought together to form the hydrogen bonds is also important. However DeltaE(el) cannot alone account for the strength of the hydrogen bonds as it is more than compensated for by the repulsive Pauli repulsion (DeltaE(Pauli)). When N' is part of an aromatic ring, N'H-O and N'H-N bonds are similar in strength to OH-O links involving carboxylic groups. However, NH-O bonds involving amide groups (-NH(2)) are considerably weaker than the OH-O links mentioned above. In systems with different hydrogen bonds, their relative strength is determined collectively in such a way as to optimize the total interaction. This can result in that one of the bonds (OH-O, NH-O, and NH-N) becomes particularly strong or exceptionally weak. Even within the same dimer two X'-HX bonds of the same type can show quite different strength.

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Year:  2010        PMID: 20099799     DOI: 10.1021/jp911405e

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  14 in total

1.  Theoretical description of halogen bonding - an insight based on the natural orbitals for chemical valence combined with the extended-transition-state method (ETS-NOCV).

Authors:  Mariusz P Mitoraj; Artur Michalak
Journal:  J Mol Model       Date:  2012-06-06       Impact factor: 1.810

2.  Applications of the ETS-NOCV method in descriptions of chemical reactions.

Authors:  Mariusz Paweł Mitoraj; Monika Parafiniuk; Monika Srebro; Michał Handzlik; Agnieszka Buczek; Artur Michalak
Journal:  J Mol Model       Date:  2011-03-29       Impact factor: 1.810

3.  ETS-NOCV description of σ-hole bonding.

Authors:  Karol Dyduch; Mariusz P Mitoraj; Artur Michalak
Journal:  J Mol Model       Date:  2012-09-30       Impact factor: 1.810

4.  Deformation density and energy decomposition to describe interactions between (η5-C5H5)M and highly reactive molecules C4H4 and (C3H3)-.

Authors:  Masoumeh Mousavi; Ali H Pakiari
Journal:  J Mol Model       Date:  2014-08-13       Impact factor: 1.810

Review 5.  Transition Metal Catalysis Controlled by Hydrogen Bonding in the Second Coordination Sphere.

Authors:  Joost N H Reek; Bas de Bruin; Sonja Pullen; Tiddo J Mooibroek; Alexander M Kluwer; Xavier Caumes
Journal:  Chem Rev       Date:  2022-05-20       Impact factor: 72.087

6.  The Role of Aromaticity, Hybridization, Electrostatics, and Covalency in Resonance-Assisted Hydrogen Bonds of Adenine-Thymine (AT) Base Pairs and Their Mimics.

Authors:  L Guillaumes; S Simon; C Fonseca Guerra
Journal:  ChemistryOpen       Date:  2015-03-09       Impact factor: 2.911

7.  On the origin of internal rotation in ammonia borane.

Authors:  Monika Parafiniuk; Mariusz P Mitoraj
Journal:  J Mol Model       Date:  2014-05-27       Impact factor: 1.810

8.  Evidences for Cooperative Resonance-Assisted Hydrogen Bonds in Protein Secondary Structure Analogs.

Authors:  Yu Zhou; Geng Deng; Yan-Zhen Zheng; Jing Xu; Hamad Ashraf; Zhi-Wu Yu
Journal:  Sci Rep       Date:  2016-11-16       Impact factor: 4.379

9.  Heterolytic Splitting of Molecular Hydrogen by Frustrated and Classical Lewis Pairs: A Unified Reactivity Concept.

Authors:  Gabriella Skara; Freija De Vleeschouwer; Paul Geerlings; Frank De Proft; Balazs Pinter
Journal:  Sci Rep       Date:  2017-11-22       Impact factor: 4.379

10.  Revealing the thermodynamic driving force for ligand-based reductions in quinoids; conceptual rules for designing redox active and non-innocent ligands.

Authors:  G Skara; B Pinter; P Geerlings; F De Proft
Journal:  Chem Sci       Date:  2015-05-01       Impact factor: 9.825

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