Literature DB >> 23086491

Recent advances in plant-virus interaction with emphasis on small interfering RNAs (siRNAs).

Namisha Sharma1, Pranav Pankaj Sahu, Swati Puranik, Manoj Prasad.   

Abstract

Regulation of several biological functions in plants has now been known to involve diverse RNA silencing pathways. These vital pathways involve various components such as dsRNA, Dicer, RNA-dependent RNA polymerase and Argonaute proteins, which lead to the production of several small RNAs (sRNAs) varying in their sizes. These sRNAs have significant role in the regulation of gene expression at transcriptional and translational levels. Among them, small interfering RNAs (siRNAs; majorly 21, 22 and 24 nt) have been shown to play an important role in plants' resistance against many viruses by inhibiting the viral gene expression. Furthermore, it has also been highlighted that siRNA-mediated methylation of viral DNA confers resistance to various plant DNA viruses. In this review, we have outlined the recent advances made using the siRNA-mediated antiviral strategy, along with methylation-based epigenetic defensive mechanisms as a protective measure against diverse plant viruses.

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Year:  2013        PMID: 23086491     DOI: 10.1007/s12033-012-9615-7

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  107 in total

1.  Atypical RNA polymerase subunits required for RNA-directed DNA methylation.

Authors:  Tatsuo Kanno; Bruno Huettel; M Florian Mette; Werner Aufsatz; Estelle Jaligot; Lucia Daxinger; David P Kreil; Marjori Matzke; Antonius J M Matzke
Journal:  Nat Genet       Date:  2005-05-29       Impact factor: 38.330

2.  An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal.

Authors:  Frank Schwach; Fabian E Vaistij; Louise Jones; David C Baulcombe
Journal:  Plant Physiol       Date:  2005-07-22       Impact factor: 8.340

Review 3.  The diversity of RNA silencing pathways in plants.

Authors:  Peter Brodersen; Olivier Voinnet
Journal:  Trends Genet       Date:  2006-03-29       Impact factor: 11.639

Review 4.  Roles of plant small RNAs in biotic stress responses.

Authors:  Virginia Ruiz-Ferrer; Olivier Voinnet
Journal:  Annu Rev Plant Biol       Date:  2009       Impact factor: 26.379

5.  DNA methylation inhibits propagation of tomato golden mosaic virus DNA in transfected protoplasts.

Authors:  C L Brough; W E Gardiner; N M Inamdar; X Y Zhang; M Ehrlich; D M Bisaro
Journal:  Plant Mol Biol       Date:  1992-02       Impact factor: 4.076

6.  The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins.

Authors:  Atsushi Takeda; Shintaro Iwasaki; Toshiaki Watanabe; Maki Utsumi; Yuichiro Watanabe
Journal:  Plant Cell Physiol       Date:  2008-03-14       Impact factor: 4.927

7.  Recovery from Cucurbit leaf crumple virus (family Geminiviridae, genus Begomovirus) infection is an adaptive antiviral response associated with changes in viral small RNAs.

Authors:  C Hagen; M R Rojas; T Kon; R L Gilbertson
Journal:  Phytopathology       Date:  2008-09       Impact factor: 4.025

8.  The Polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing.

Authors:  Diane Bortolamiol; Maghsoud Pazhouhandeh; Katia Marrocco; Pascal Genschik; Véronique Ziegler-Graff
Journal:  Curr Biol       Date:  2007-09-18       Impact factor: 10.834

9.  Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing.

Authors:  Todd Blevins; Rajendran Rajeswaran; Padubidri V Shivaprasad; Daria Beknazariants; Azeddine Si-Ammour; Hyun-Sook Park; Franck Vazquez; Dominique Robertson; Frederick Meins; Thomas Hohn; Mikhail M Pooggin
Journal:  Nucleic Acids Res       Date:  2006-11-07       Impact factor: 16.971

10.  Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis.

Authors:  Xiaopeng Qi; Forrest Sheng Bao; Zhixin Xie
Journal:  PLoS One       Date:  2009-03-24       Impact factor: 3.240

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  21 in total

Review 1.  Epigenetic mechanisms of plant stress responses and adaptation.

Authors:  Pranav Pankaj Sahu; Garima Pandey; Namisha Sharma; Swati Puranik; Mehanathan Muthamilarasan; Manoj Prasad
Journal:  Plant Cell Rep       Date:  2013-05-30       Impact factor: 4.570

Review 2.  Involvement of host regulatory pathways during geminivirus infection: a novel platform for generating durable resistance.

Authors:  Pranav Pankaj Sahu; Namisha Sharma; Swati Puranik; Mehanathan Muthamilarasan; Manoj Prasad
Journal:  Funct Integr Genomics       Date:  2014-03       Impact factor: 3.410

Review 3.  Epigenetics in the plant-virus interaction.

Authors:  Chenguang Wang; Chaonan Wang; Jingze Zou; Yunshu Yang; Zhihong Li; Shuifang Zhu
Journal:  Plant Cell Rep       Date:  2019-05-07       Impact factor: 4.570

Review 4.  Advances in Setaria genomics for genetic improvement of cereals and bioenergy grasses.

Authors:  Mehanathan Muthamilarasan; Manoj Prasad
Journal:  Theor Appl Genet       Date:  2014-09-20       Impact factor: 5.699

Review 5.  DNA methylation dynamics in response to abiotic and pathogen stress in plants.

Authors:  Heena Arora; Roshan Kumar Singh; Shambhavi Sharma; Namisha Sharma; Anurag Panchal; Tuhin Das; Ashish Prasad; Manoj Prasad
Journal:  Plant Cell Rep       Date:  2022-07-14       Impact factor: 4.964

6.  Grafting on a Non-Transgenic Tolerant Tomato Variety Confers Resistance to the Infection of a Sw5-Breaking Strain of Tomato spotted wilt virus via RNA Silencing.

Authors:  Roberta Spanò; Tiziana Mascia; Richard Kormelink; Donato Gallitelli
Journal:  PLoS One       Date:  2015-10-23       Impact factor: 3.240

7.  Horticultural innovation by viral-induced gene regulation of carotenogenesis.

Authors:  Lucky Paudel; Stephanie Kerr; Peter Prentis; Miloš Tanurdžić; Alexie Papanicolaou; Jonathan M Plett; Christopher I Cazzonelli
Journal:  Hortic Res       Date:  2022-01-18       Impact factor: 7.291

8.  RIP-seq of BmAgo2-associated small RNAs reveal various types of small non-coding RNAs in the silkworm, Bombyx mori.

Authors:  Zuoming Nie; Fang Zhou; Dan Li; Zhengbing Lv; Jian Chen; Yue Liu; Jianhong Shu; Qing Sheng; Wei Yu; Wenping Zhang; Caiying Jiang; Yuhua Yao; Juming Yao; Yongfeng Jin; Yaozhou Zhang
Journal:  BMC Genomics       Date:  2013-09-28       Impact factor: 3.969

Review 9.  Dynamics of DNA Methylation and Its Functions in Plant Growth and Development.

Authors:  Suresh Kumar; Trilochan Mohapatra
Journal:  Front Plant Sci       Date:  2021-05-21       Impact factor: 5.753

10.  Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing.

Authors:  Vivek Anantharaman; Kira S Makarova; A Maxwell Burroughs; Eugene V Koonin; L Aravind
Journal:  Biol Direct       Date:  2013-06-15       Impact factor: 4.540

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