Literature DB >> 22658507

Nanopores: A journey towards DNA sequencing.

Meni Wanunu1.   

Abstract

Much more than ever, nucleic acids are recognized as key building blocks in many of life's processes, and the science of studying these molecular wonders at the single-molecule level is thriving. A new method of doing so has been introduced in the mid 1990's. This method is exceedingly simple: a nanoscale pore that spans across an impermeable thin membrane is placed between two chambers that contain an electrolyte, and voltage is applied across the membrane using two electrodes. These conditions lead to a steady stream of ion flow across the pore. Nucleic acid molecules in solution can be driven through the pore, and structural features of the biomolecules are observed as measurable changes in the trans-membrane ion current. In essence, a nanopore is a high-throughput ion microscope and a single-molecule force apparatus. Nanopores are taking center stage as a tool that promises to read a DNA sequence, and this promise has resulted in overwhelming academic, industrial, and national interest. Regardless of the fate of future nanopore applications, in the process of this 16-year-long exploration, many studies have validated the indispensability of nanopores in the toolkit of single-molecule biophysics. This review surveys past and current studies related to nucleic acid biophysics, and will hopefully provoke a discussion of immediate and future prospects for the field.
Copyright © 2012 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22658507      PMCID: PMC3780799          DOI: 10.1016/j.plrev.2012.05.010

Source DB:  PubMed          Journal:  Phys Life Rev        ISSN: 1571-0645            Impact factor:   11.025


  122 in total

1.  Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter.

Authors:  L Q Gu; O Braha; S Conlan; S Cheley; H Bayley
Journal:  Nature       Date:  1999-04-22       Impact factor: 49.962

2.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

3.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

4.  Detecting single stranded DNA with a solid state nanopore.

Authors:  Daniel Fologea; Marc Gershow; Bradley Ledden; David S McNabb; Jene A Golovchenko; Jiali Li
Journal:  Nano Lett       Date:  2005-10       Impact factor: 11.189

5.  Slowing DNA translocation in a solid-state nanopore.

Authors:  Daniel Fologea; James Uplinger; Brian Thomas; David S McNabb; Jiali Li
Journal:  Nano Lett       Date:  2005-09       Impact factor: 11.189

6.  Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channel.

Authors:  Jérôme Mathé; Aleksei Aksimentiev; David R Nelson; Klaus Schulten; Amit Meller
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-19       Impact factor: 11.205

7.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

8.  Nanopore detection of 8-oxo-7,8-dihydro-2'-deoxyguanosine in immobilized single-stranded DNA via adduct formation to the DNA damage site.

Authors:  Anna E P Schibel; Na An; Qian Jin; Aaron M Fleming; Cynthia J Burrows; Henry S White
Journal:  J Am Chem Soc       Date:  2010-12-07       Impact factor: 15.419

9.  Nucleobase recognition in ssDNA at the central constriction of the alpha-hemolysin pore.

Authors:  David Stoddart; Andrew J Heron; Jochen Klingelhoefer; Ellina Mikhailova; Giovanni Maglia; Hagan Bayley
Journal:  Nano Lett       Date:  2010-09-08       Impact factor: 11.189

10.  Artificial nanopores that mimic the transport selectivity of the nuclear pore complex.

Authors:  Tijana Jovanovic-Talisman; Jaclyn Tetenbaum-Novatt; Anna Sophia McKenney; Anton Zilman; Reiner Peters; Michael P Rout; Brian T Chait
Journal:  Nature       Date:  2008-12-21       Impact factor: 49.962

View more
  124 in total

1.  SDS-assisted protein transport through solid-state nanopores.

Authors:  Laura Restrepo-Pérez; Shalini John; Aleksei Aksimentiev; Chirlmin Joo; Cees Dekker
Journal:  Nanoscale       Date:  2017-08-17       Impact factor: 7.790

2.  Molecular dynamics simulation of water permeation through the alpha-hemolysin channel.

Authors:  Jirasak Wong-Ekkabut; Mikko Karttunen
Journal:  J Biol Phys       Date:  2015-08-12       Impact factor: 1.365

3.  Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA.

Authors:  Andrew H Laszlo; Ian M Derrington; Henry Brinkerhoff; Kyle W Langford; Ian C Nova; Jenny Mae Samson; Joshua J Bartlett; Mikhail Pavlenok; Jens H Gundlach
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

4.  Electrostatic Control of Polymer Translocation Speed through α‑Hemolysin Protein Pore.

Authors:  Byoung-Jin Jeon; Murugappan Muthukumar
Journal:  Macromolecules       Date:  2016-11-22       Impact factor: 5.985

5.  Solid-state nanopore localization by controlled breakdown of selectively thinned membranes.

Authors:  Autumn T Carlsen; Kyle Briggs; Adam R Hall; Vincent Tabard-Cossa
Journal:  Nanotechnology       Date:  2017-01-03       Impact factor: 3.874

6.  A Nanopore Approach for Analysis of Caspase-7 Activity in Cell Lysates.

Authors:  Bach Pham; Scott J Eron; Maureen E Hill; Xin Li; Monifa A Fahie; Jeanne A Hardy; Min Chen
Journal:  Biophys J       Date:  2019-08-02       Impact factor: 4.033

7.  A tip-attached tuning fork sensor for the control of DNA translocation through a nanopore.

Authors:  Changbae Hyun; Harpreet Kaur; Tao Huang; Jiali Li
Journal:  Rev Sci Instrum       Date:  2017-02       Impact factor: 1.523

8.  Wavelet Denoising of High-Bandwidth Nanopore and Ion-Channel Signals.

Authors:  Siddharth Shekar; Chen-Chi Chien; Andreas Hartel; Peijie Ong; Oliver B Clarke; Andrew Marks; Marija Drndic; Kenneth L Shepard
Journal:  Nano Lett       Date:  2019-01-07       Impact factor: 11.189

9.  Mechanical Trapping of DNA in a Double-Nanopore System.

Authors:  Sergii Pud; Shu-Han Chao; Maxim Belkin; Daniel Verschueren; Teun Huijben; Casper van Engelenburg; Cees Dekker; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2016-12-01       Impact factor: 11.189

10.  Electrically controlled nanoparticle synthesis inside nanopores.

Authors:  Kimberly Venta; Meni Wanunu; Marija Drndić
Journal:  Nano Lett       Date:  2013-01-11       Impact factor: 11.189

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.