Literature DB >> 22652765

Superfamily 2 helicases.

Alicia K Byrd1, Kevin D Raney.   

Abstract

Superfamily 2 helicases are involved in all aspects of RNA metabolism, and many steps in DNA metabolism. This review focuses on the basic mechanistic, structural and biological properties of each of the families of helicases within superfamily 2. There are ten separate families of helicases within superfamily 2, each playing specific roles in nucleic acid metabolism. The mechanisms of action are diverse, as well as the effect on the nucleic acid. Some families translocate on single-stranded nucleic acid and unwind duplexes, some unwind double-stranded nucleic acids without translocation, and some translocate on double-stranded or single-stranded nucleic acids without unwinding.

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Year:  2012        PMID: 22652765      PMCID: PMC3775597          DOI: 10.2741/4038

Source DB:  PubMed          Journal:  Front Biosci (Landmark Ed)        ISSN: 2768-6698


  167 in total

1.  Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression.

Authors:  P McGlynn; R G Lloyd
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

2.  Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism.

Authors:  P Soultanas; M S Dillingham; P Wiley; M R Webb; D B Wigley
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

Review 3.  The ends of the affair: capping and polyadenylation.

Authors:  A J Shatkin; J L Manley
Journal:  Nat Struct Biol       Date:  2000-10

Review 4.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

5.  A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling.

Authors:  Ralf Strohner; Malte Wachsmuth; Karoline Dachauer; Jacek Mazurkiewicz; Julia Hochstatter; Karsten Rippe; Gernot Längst
Journal:  Nat Struct Mol Biol       Date:  2005-07-17       Impact factor: 15.369

6.  Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone.

Authors:  Pilar Tijerina; Hari Bhaskaran; Rick Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

Review 7.  Non-hexameric DNA helicases and translocases: mechanisms and regulation.

Authors:  Timothy M Lohman; Eric J Tomko; Colin G Wu
Journal:  Nat Rev Mol Cell Biol       Date:  2008-05       Impact factor: 94.444

8.  Prp43 is an essential RNA-dependent ATPase required for release of lariat-intron from the spliceosome.

Authors:  Arnold Martin; Susanne Schneider; Beate Schwer
Journal:  J Biol Chem       Date:  2002-03-08       Impact factor: 5.157

Review 9.  DNA helicases, genomic instability, and human genetic disease.

Authors:  A J van Brabant; R Stan; N A Ellis
Journal:  Annu Rev Genomics Hum Genet       Date:  2000       Impact factor: 8.929

10.  Type I restriction endonucleases are true catalytic enzymes.

Authors:  Piero R Bianco; Cuiling Xu; Min Chi
Journal:  Nucleic Acids Res       Date:  2009-03-30       Impact factor: 16.971

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  49 in total

1.  Cancer-associated mutants of RNA helicase DDX3X are defective in RNA-stimulated ATP hydrolysis.

Authors:  Leslie B Epling; Christy R Grace; Brandon R Lowe; Janet F Partridge; Eric J Enemark
Journal:  J Mol Biol       Date:  2015-02-25       Impact factor: 5.469

2.  N-Naphthoyl-substituted indole thio-barbituric acid analogs inhibit the helicase activity of the hepatitis C virus NS3.

Authors:  John C Marecki; Suja Aarattuthodiyil; Alicia K Byrd; Narsimha R Penthala; Peter A Crooks; Kevin D Raney
Journal:  Bioorg Med Chem Lett       Date:  2018-12-13       Impact factor: 2.823

Review 3.  Genome stability: recent insights in the topoisomerase reverse gyrase and thermophilic DNA alkyltransferase.

Authors:  Antonella Vettone; Giuseppe Perugino; Mosè Rossi; Anna Valenti; Maria Ciaramella
Journal:  Extremophiles       Date:  2014-08-08       Impact factor: 2.395

4.  A parallel quadruplex DNA is bound tightly but unfolded slowly by pif1 helicase.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  J Biol Chem       Date:  2015-01-14       Impact factor: 5.157

Review 5.  RecQ and Fe-S helicases have unique roles in DNA metabolism dictated by their unwinding directionality, substrate specificity, and protein interactions.

Authors:  Katrina N Estep; Robert M Brosh
Journal:  Biochem Soc Trans       Date:  2017-12-22       Impact factor: 5.407

6.  Unlocking Cryptic Metabolites with Mass Spectrometry-Guided Transposon Mutant Selection.

Authors:  Aya Yoshimura; Brett C Covington; Étienne Gallant; Chen Zhang; Anran Li; Mohammad R Seyedsayamdost
Journal:  ACS Chem Biol       Date:  2020-09-14       Impact factor: 5.100

7.  Revealing dynamics of helicase translocation on single-stranded DNA using high-resolution nanopore tweezers.

Authors:  Jonathan M Craig; Andrew H Laszlo; Henry Brinkerhoff; Ian M Derrington; Matthew T Noakes; Ian C Nova; Benjamin I Tickman; Kenji Doering; Noah F de Leeuw; Jens H Gundlach
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-16       Impact factor: 11.205

8.  Quantitative microspectroscopic imaging reveals viral and cellular RNA helicase interactions in live cells.

Authors:  M J Corby; Michael R Stoneman; Gabriel Biener; Joel D Paprocki; Rajesh Kolli; Valerica Raicu; David N Frick
Journal:  J Biol Chem       Date:  2017-05-08       Impact factor: 5.157

9.  Chemical modifications of DNA for study of helicase mechanisms.

Authors:  Kevin D Raney
Journal:  Bioorg Med Chem       Date:  2014-06-02       Impact factor: 3.641

Review 10.  Structure and function of Pif1 helicase.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  Biochem Soc Trans       Date:  2017-09-12       Impact factor: 5.407

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