Literature DB >> 22650253

Using fragment-based technologies to target protein-protein interactions.

Justin F Bower1, Andrew Pannifer.   

Abstract

Whilst fragment-based screening has found significant utility in aiding the discovery of high quality hits against a range of targets, the use of this technology in the protein-protein interaction inhibitor field is very much in its infancy. This review aims to highlight the key technologies used to identify fragment hits, such as NMR, SPR, X-ray crystallography and biochemical screening, the fragment-based protein-protein interaction case studies reported to date and, more importantly, the potential of this methodology in unearthing high quality hit molecules in this critical area of drug discovery. In addition, we also discuss some of the key aspects of fragment library design, the composition of a high quality library and suggest ways in which future, more structurally diverse fragments which occupy different regions of chemical space to the vast majority of current fragment libraries may be selected.

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Year:  2012        PMID: 22650253     DOI: 10.2174/138161212802651689

Source DB:  PubMed          Journal:  Curr Pharm Des        ISSN: 1381-6128            Impact factor:   3.116


  9 in total

Review 1.  Oncogenic protein interfaces: small molecules, big challenges.

Authors:  Tracy L Nero; Craig J Morton; Jessica K Holien; Jerome Wielens; Michael W Parker
Journal:  Nat Rev Cancer       Date:  2014-03-13       Impact factor: 60.716

2.  Deconstruction of a nutlin: dissecting the binding determinants of a potent protein-protein interaction inhibitor.

Authors:  David C Fry; Charles Wartchow; Bradford Graves; Cheryl Janson; Christine Lukacs; Ursula Kammlott; Charles Belunis; Stefan Palme; Christian Klein; Binh Vu
Journal:  ACS Med Chem Lett       Date:  2013-05-24       Impact factor: 4.345

3.  Identification of fragments targeting an alternative pocket on HIV-1 gp41 by NMR screening and similarity searching.

Authors:  Shidong Chu; Miriam Gochin
Journal:  Bioorg Med Chem Lett       Date:  2013-07-22       Impact factor: 2.823

4.  Development of Inhibitors of Protein-protein Interactions through REPLACE: Application to the Design and Development Non-ATP Competitive CDK Inhibitors.

Authors:  Padmavathy Nandha Premnath; Sandra Craig; Campbell McInnes
Journal:  J Vis Exp       Date:  2015-10-26       Impact factor: 1.355

5.  Luminescence complementation assay for measurement of binding to protein C-termini in live cells.

Authors:  Cory M Nadel; Xu Ran; Jason E Gestwicki
Journal:  Anal Biochem       Date:  2020-09-10       Impact factor: 3.365

6.  Thermo-kinetic analysis space expansion for cyclophilin-ligand interactions - identification of a new nonpeptide inhibitor using Biacore™ T200.

Authors:  Martin A Wear; Matthew W Nowicki; Elizabeth A Blackburn; Iain W McNae; Malcolm D Walkinshaw
Journal:  FEBS Open Bio       Date:  2017-02-23       Impact factor: 2.693

Review 7.  Process of Fragment-Based Lead Discovery-A Perspective from NMR.

Authors:  Rongsheng Ma; Pengchao Wang; Jihui Wu; Ke Ruan
Journal:  Molecules       Date:  2016-07-16       Impact factor: 4.411

Review 8.  Applications of Solution NMR in Drug Discovery.

Authors:  Li Shi; Naixia Zhang
Journal:  Molecules       Date:  2021-01-22       Impact factor: 4.411

9.  BcL-xL conformational changes upon fragment binding revealed by NMR.

Authors:  Clémentine Aguirre; Tim Ten Brink; Olivier Walker; Florence Guillière; Dany Davesne; Isabelle Krimm
Journal:  PLoS One       Date:  2013-05-23       Impact factor: 3.240

  9 in total

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