Literature DB >> 33499337

Applications of Solution NMR in Drug Discovery.

Li Shi1, Naixia Zhang1,2.   

Abstract

During the past decades, solution nuclear magnetic resonance (NMR) spectroscopy has demonstrated itself as a promising tool in drug discovery. Especially, fragment-based drug discovery (FBDD) has benefited a lot from the NMR development. Multiple candidate compounds and FDA-approved drugs derived from FBDD have been developed with the assistance of NMR techniques. NMR has broad applications in different stages of the FBDD process, which includes fragment library construction, hit generation and validation, hit-to-lead optimization and working mechanism elucidation, etc. In this manuscript, we reviewed the current progresses of NMR applications in fragment-based drug discovery, which were illustrated by multiple reported cases. Moreover, the NMR applications in protein-protein interaction (PPI) modulators development and the progress of in-cell NMR for drug discovery were also briefly summarized.

Entities:  

Keywords:  fragment-based drug discovery (FBDD); ligand-observed NMR; nuclear magnetic resonance (NMR); target-observed NMR; working mechanism elucidation

Mesh:

Substances:

Year:  2021        PMID: 33499337      PMCID: PMC7865596          DOI: 10.3390/molecules26030576

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  169 in total

1.  Fragment based drug discovery: practical implementation based on ¹⁹F NMR spectroscopy.

Authors:  John B Jordan; Leszek Poppe; Xiaoyang Xia; Alan C Cheng; Yax Sun; Klaus Michelsen; Heather Eastwood; Paul D Schnier; Thomas Nixey; Wenge Zhong
Journal:  J Med Chem       Date:  2012-01-11       Impact factor: 7.446

Review 2.  NMR screening and hit validation in fragment based drug discovery.

Authors:  Ramón Campos-Olivas
Journal:  Curr Top Med Chem       Date:  2011       Impact factor: 3.295

Review 3.  Paramagnetic NMR in solution and the solid state.

Authors:  Andrew J Pell; Guido Pintacuda; Clare P Grey
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2018-05-24       Impact factor: 9.795

Review 4.  Protein-Small Molecule Interactions by WaterLOGSY.

Authors:  Renjie Huang; Ivanhoe K H Leung
Journal:  Methods Enzymol       Date:  2018-09-20       Impact factor: 1.600

5.  Probing the interaction of a quercetin bioconjugate with Bcl-2 in living human cancer cells with in-cell NMR spectroscopy.

Authors:  Alexandra Primikyri; Nisar Sayyad; Giacomo Quilici; Eirinaios I Vrettos; Kyungeun Lim; Seung-Wook Chi; Giovanna Musco; Ioannis P Gerothanassis; Andreas G Tzakos
Journal:  FEBS Lett       Date:  2018-09-29       Impact factor: 4.124

6.  Binding mode characterization of novel RNA polymerase inhibitors using a combined biochemical and NMR approach.

Authors:  Martina Fruth; Alberto Plaza; Stefan Hinsberger; Jan Henning Sahner; Jörg Haupenthal; Markus Bischoff; Rolf Jansen; Rolf Müller; Rolf W Hartmann
Journal:  ACS Chem Biol       Date:  2014-09-26       Impact factor: 5.100

7.  Ligand-Based Fluorine NMR Screening: Principles and Applications in Drug Discovery Projects.

Authors:  Claudio Dalvit; Anna Vulpetti
Journal:  J Med Chem       Date:  2018-10-29       Impact factor: 7.446

8.  Fragment Linking and Optimization of Inhibitors of the Aspartic Protease Endothiapepsin: Fragment-Based Drug Design Facilitated by Dynamic Combinatorial Chemistry.

Authors:  Milon Mondal; Nedyalka Radeva; Hugo Fanlo-Virgós; Sijbren Otto; Gerhard Klebe; Anna K H Hirsch
Journal:  Angew Chem Int Ed Engl       Date:  2016-07-12       Impact factor: 15.336

9.  Is NMR Fragment Screening Fine-Tuned to Assess Druggability of Protein-Protein Interactions?

Authors:  David M Dias; Inge Van Molle; Matthias G J Baud; Carles Galdeano; Carlos F G C Geraldes; Alessio Ciulli
Journal:  ACS Med Chem Lett       Date:  2013-11-03       Impact factor: 4.345

10.  Combined Protein- and Ligand-Observed NMR Workflow to Screen Fragment Cocktails against Multiple Proteins: A Case Study Using Bromodomains.

Authors:  Jorden A Johnson; Noelle M Olson; Madison J Tooker; Scott K Bur; William C K Pomerantz
Journal:  Molecules       Date:  2020-08-29       Impact factor: 4.411

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  3 in total

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Authors:  Anja Thalhammer; Nina K Bröker
Journal:  Methods Mol Biol       Date:  2023

Review 2.  Assays Used for Discovering Small Molecule Inhibitors of YAP Activity in Cancers.

Authors:  Subhajit Maity; Artem Gridnev; Jyoti R Misra
Journal:  Cancers (Basel)       Date:  2022-02-17       Impact factor: 6.639

3.  Deep Learning-Based Method for Compound Identification in NMR Spectra of Mixtures.

Authors:  Weiwei Wei; Yuxuan Liao; Yufei Wang; Shaoqi Wang; Wen Du; Hongmei Lu; Bo Kong; Huawu Yang; Zhimin Zhang
Journal:  Molecules       Date:  2022-06-07       Impact factor: 4.927

  3 in total

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