Literature DB >> 22628515

Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.

Steven D Brown1, Raphael Lamed, Ely Morag, Ilya Borovok, Yuval Shoham, Dawn M Klingeman, Courtney M Johnson, Zamin Yang, Miriam L Land, Sagar M Utturkar, Martin Keller, Edward A Bayer.   

Abstract

Clostridium thermocellum wild-type strain YS is an anaerobic, thermophilic, cellulolytic bacterium capable of directly converting cellulosic substrates into ethanol. Strain YS and a derived cellulose adhesion-defective mutant strain, AD2, played pivotal roles in describing the original cellulosome concept. We present their draft genome sequences.

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Year:  2012        PMID： 22628515      PMCID： PMC3370843          DOI： 10.1128/JB.00473-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  35 in total

1.  Characterization and purification of thermostable beta-glucosidase from Clostridium thermocellum.

Authors:  N Aït; N Creuzet; J Cattanéo
Journal:  Biochem Biophys Res Commun       Date:  1979-09-27       Impact factor: 3.575

Review 2.  From cellulosomes to cellulosomics.

Authors:  Edward A Bayer; Raphael Lamed; Bryan A White; Harry J Flint
Journal:  Chem Rec       Date:  2008       Impact factor: 6.771

3.  Effects of Stirring and Hydrogen on Fermentation Products of Clostridium thermocellum.

Authors:  R J Lamed; J H Lobos; T M Su
Journal:  Appl Environ Microbiol       Date:  1988-05       Impact factor: 4.792

Review 4.  Cellulose, cellulases and cellulosomes.

Authors:  E A Bayer; H Chanzy; R Lamed; Y Shoham
Journal:  Curr Opin Struct Biol       Date:  1998-10       Impact factor: 6.809

5.  Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.

Authors:  Lawrence Feinberg; Justine Foden; Trisha Barrett; Karen Walston Davenport; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Alla Lapidus; Susan Lucas; Jan-Fang Cheng; Samuel Pitluck; Tanja Woyke; Natalia Ivanova; Natalia Mikhailova; Miriam Land; Loren Hauser; D Aaron Argyros; Lynne Goodwin; David Hogsett; Nicky Caiazza
Journal:  J Bacteriol       Date:  2011-04-01       Impact factor: 3.490

6.  Novel O-linked carbohydrate chains in the cellulase complex (cellulosome) of Clostridium thermocellum. 3-O-Methyl-N-acetylglucosamine as a constituent of a glycoprotein.

Authors:  G J Gerwig; P de Waard; J P Kamerling; J F Vliegenthart; E Morgenstern; R Lamed; E A Bayer
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

7.  Ultrastructure of the cell surface cellulosome of Clostridium thermocellum and its interaction with cellulose.

Authors:  E A Bayer; R Lamed
Journal:  J Bacteriol       Date:  1986-09       Impact factor: 3.490

8.  Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum.

Authors:  Steven D Brown; Adam M Guss; Tatiana V Karpinets; Jerry M Parks; Nikolai Smolin; Shihui Yang; Miriam L Land; Dawn M Klingeman; Ashwini Bhandiwad; Miguel Rodriguez; Babu Raman; Xiongjun Shao; Jonathan R Mielenz; Jeremy C Smith; Martin Keller; Lee R Lynd
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

9.  Development of pyrF-based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta mutant.

Authors:  Shital A Tripathi; Daniel G Olson; D Aaron Argyros; Bethany B Miller; Trisha F Barrett; Daniel M Murphy; Jesse D McCool; Anne K Warner; Vineet B Rajgarhia; Lee R Lynd; David A Hogsett; Nicky C Caiazza
Journal:  Appl Environ Microbiol       Date:  2010-08-06       Impact factor: 4.792

10.  Identification of the cellulose-binding domain of the cellulosome subunit S1 from Clostridium thermocellum YS.

Authors:  D M Poole; E Morag; R Lamed; E A Bayer; G P Hazlewood; H J Gilbert
Journal:  FEMS Microbiol Lett       Date:  1992-12-01       Impact factor: 2.742
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  15 in total

Review 1.  Handling gene and protein names in the age of bioinformatics: the special challenge of secreted multimodular bacterial enzymes such as the cbhA/cbh9A gene of Clostridium thermocellum.

Authors:  Wolfgang H Schwarz; Roman Brunecky; Jannis Broeker; Wolfgang Liebl; Vladimir V Zverlov
Journal:  World J Microbiol Biotechnol       Date:  2018-02-26       Impact factor: 3.312

2.  Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.

Authors:  Shihui Yang; Richard J Giannone; Lezlee Dice; Zamin K Yang; Nancy L Engle; Timothy J Tschaplinski; Robert L Hettich; Steven D Brown
Journal:  BMC Genomics       Date:  2012-07-23       Impact factor: 3.969

3.  Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions.

Authors:  Yvonne Stolze; Martha Zakrzewski; Irena Maus; Felix Eikmeyer; Sebastian Jaenicke; Nils Rottmann; Clemens Siebner; Alfred Pühler; Andreas Schlüter
Journal:  Biotechnol Biofuels       Date:  2015-02-08       Impact factor: 6.040

4.  Comparison of transcriptional profiles of Clostridium thermocellum grown on cellobiose and pretreated yellow poplar using RNA-Seq.

Authors:  Hui Wei; Yan Fu; Lauren Magnusson; John O Baker; Pin-Ching Maness; Qi Xu; Shihui Yang; Andrew Bowersox; Igor Bogorad; Wei Wang; Melvin P Tucker; Michael E Himmel; Shi-You Ding
Journal:  Front Microbiol       Date:  2014-04-11       Impact factor: 5.640

5.  Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress.

Authors:  Charlotte M Wilson; Shihui Yang; Miguel Rodriguez; Qin Ma; Courtney M Johnson; Lezlee Dice; Ying Xu; Steven D Brown
Journal:  Biotechnol Biofuels       Date:  2013-09-12       Impact factor: 6.040

6.  Comparative genomic analysis of the microbiome [corrected] of herbivorous insects reveals eco-environmental adaptations: biotechnology applications.

Authors:  Weibing Shi; Shangxian Xie; Xueyan Chen; Su Sun; Xin Zhou; Lantao Liu; Peng Gao; Nikos C Kyrpides; En-Gyu No; Joshua S Yuan
Journal:  PLoS Genet       Date:  2013-01-10       Impact factor: 5.917

7.  Cellulosomics of the cellulolytic thermophile Clostridium clariflavum.

Authors:  Lior Artzi; Bareket Dassa; Ilya Borovok; Melina Shamshoum; Raphael Lamed; Edward A Bayer
Journal:  Biotechnol Biofuels       Date:  2014-07-01       Impact factor: 6.040

8.  Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community.

Authors:  Masahiro Yuki; Kenshiro Oshima; Wataru Suda; Mitsuo Sakamoto; Keiko Kitamura; Toshiya Iida; Masahira Hattori; Moriya Ohkuma
Journal:  Genome Announc       Date:  2014-02-20

9.  Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia.

Authors:  Steven D Brown; Shilpa Nagaraju; Sagar Utturkar; Sashini De Tissera; Simón Segovia; Wayne Mitchell; Miriam L Land; Asela Dassanayake; Michael Köpke
Journal:  Biotechnol Biofuels       Date:  2014-03-21       Impact factor: 6.040

Review 10.  The emergence of Clostridium thermocellum as a high utility candidate for consolidated bioprocessing applications.

Authors:  Hannah Akinosho; Kelsey Yee; Dan Close; Arthur Ragauskas
Journal:  Front Chem       Date:  2014-08-26       Impact factor: 5.221
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