Literature DB >> 19107866

From cellulosomes to cellulosomics.

Edward A Bayer1, Raphael Lamed, Bryan A White, Harry J Flint.   

Abstract

Cellulosomes are intricate multienzyme systems produced by several cellulolytic bacteria, the first example of which was discovered in the anaerobic thermophilic bacterium, Clostridium thermocellum. Cellulosomes are designed for efficient degradation of plant cell wall polysaccharides, notably cellulose--the most abundant renewable polymer on earth. The component parts of the multicomponent complex are integrated by virtue of a unique family of integrating modules, the cohesins and the dockerins, whose distribution and specificity dictate the overall cellulosome architecture. A full generation of research has elapsed since the original publications that documented the cellulosome concept. In this review, we provide a personal account on the discovery process, while describing how divergent cellulosome systems were identified and investigated, culminating in the collaboration of several labs worldwide to tackle together the challenging field of cellulosome genomics and metagenomics. 2008 The Japan Chemical Journal Forum and Wiley Periodicals, Inc.

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Year:  2008        PMID: 19107866     DOI: 10.1002/tcr.20160

Source DB:  PubMed          Journal:  Chem Rec        ISSN: 1528-0691            Impact factor:   6.771


  108 in total

1.  Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.

Authors:  Steven D Brown; Raphael Lamed; Ely Morag; Ilya Borovok; Yuval Shoham; Dawn M Klingeman; Courtney M Johnson; Zamin Yang; Miriam L Land; Sagar M Utturkar; Martin Keller; Edward A Bayer
Journal:  J Bacteriol       Date:  2012-06       Impact factor: 3.490

2.  Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass.

Authors:  Sara E Blumer-Schuette; Richard J Giannone; Jeffrey V Zurawski; Inci Ozdemir; Qin Ma; Yanbin Yin; Ying Xu; Irina Kataeva; Farris L Poole; Michael W W Adams; Scott D Hamilton-Brehm; James G Elkins; Frank W Larimer; Miriam L Land; Loren J Hauser; Robert W Cottingham; Robert L Hettich; Robert M Kelly
Journal:  J Bacteriol       Date:  2012-05-25       Impact factor: 3.490

3.  High-yield and phylogenetically robust methods of DNA recovery for analysis of microbial biofilms adherent to plant biomass in the herbivore gut.

Authors:  Carly P Rosewarne; Phillip B Pope; Stuart E Denman; Christopher S McSweeney; Paraic O'Cuiv; Mark Morrison
Journal:  Microb Ecol       Date:  2010-09-14       Impact factor: 4.552

4.  Structure of a fibronectin type III-like module from Clostridium thermocellum.

Authors:  Markus Alahuhta; Qi Xu; Roman Brunecky; William S Adney; Shi-You Ding; Michael E Himmel; Vladimir V Lunin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-07-27

5.  Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins.

Authors:  Peter J Turnbaugh; Christopher Quince; Jeremiah J Faith; Alice C McHardy; Tanya Yatsunenko; Faheem Niazi; Jason Affourtit; Michael Egholm; Bernard Henrissat; Rob Knight; Jeffrey I Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-02       Impact factor: 11.205

6.  Investigating receptor-ligand systems of the cellulosome with AFM-based single-molecule force spectroscopy.

Authors:  Markus A Jobst; Constantin Schoeler; Klara Malinowska; Michael A Nash
Journal:  J Vis Exp       Date:  2013-12-20       Impact factor: 1.355

7.  Structure of a family 3a carbohydrate-binding module from the cellulosomal scaffoldin CipA of Clostridium thermocellum with flanking linkers: implications for cellulosome structure.

Authors:  Oren Yaniv; Ely Morag; Ilya Borovok; Edward A Bayer; Raphael Lamed; Felix Frolow; Linda J W Shimon
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-06-27

8.  Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance.

Authors:  Marcelo Kern; John E McGeehan; Simon D Streeter; Richard N A Martin; Katrin Besser; Luisa Elias; Will Eborall; Graham P Malyon; Christina M Payne; Michael E Himmel; Kirk Schnorr; Gregg T Beckham; Simon M Cragg; Neil C Bruce; Simon J McQueen-Mason
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-03       Impact factor: 11.205

9.  A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment.

Authors:  Junhua Li; Huanzi Zhong; Yuliaxis Ramayo-Caldas; Nicolas Terrapon; Vincent Lombard; Gabrielle Potocki-Veronese; Jordi Estellé; Milka Popova; Ziyi Yang; Hui Zhang; Fang Li; Shanmei Tang; Fangming Yang; Weineng Chen; Bing Chen; Jiyang Li; Jing Guo; Cécile Martin; Emmanuelle Maguin; Xun Xu; Huanming Yang; Jian Wang; Lise Madsen; Karsten Kristiansen; Bernard Henrissat; Stanislav D Ehrlich; Diego P Morgavi
Journal:  Gigascience       Date:  2020-06-01       Impact factor: 6.524

10.  Characterization of Paenibacillus curdlanolyticus B-6 Xyn10D, a xylanase that contains a family 3 carbohydrate-binding module.

Authors:  Makiko Sakka; Yurika Higashi; Tetsuya Kimura; Khanok Ratanakhanokchai; Kazuo Sakka
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

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