Literature DB >> 22621369

Modeling detergent organization around aquaporin-0 using small-angle X-ray scattering.

Alice Berthaud1, John Manzi, Javier Pérez, Stéphanie Mangenot.   

Abstract

Solubilization of integral membrane proteins in aqueous solutions requires the presence of amphiphilic molecules like detergents. The transmembrane region of the proteins is then surrounded by a corona formed by these molecules, ensuring a hydrophilic outer surface. The presence of this corona has strongly hampered structural studies of solubilized membrane proteins by small-angle X-ray scattering (SAXS), a technique frequently used to monitor conformational changes of soluble proteins. Through the online combination of size exclusion chromatography, SAXS, and refractometry, we have determined a precise geometrical model of the n-dodecyl β-d-maltopyranoside corona surrounding aquaporin-0, the most abundant membrane protein of the eye lens. The SAXS data were well-fitted by a detergent corona shaped in an elliptical toroid around the crystal structure of the protein, similar to the elliptical shape recently reported for nanodiscs (Skar-Gislinge et al. J. Am. Chem. Soc. 2010, 132, 13713-13722). The torus thickness determined from the curve-fitting protocol is in excellent agreement with the thickness of a lipid bilayer, while the number of detergent molecules deduced from the volume of the torus compares well with those obtained on the same sample from refractometry and mass analysis based on SAXS forward scattering. For the first time, the partial specific volume of the detergent surrounding a protein was measured. The present protocol is a crucial step toward future conformational studies of membrane proteins in solution.

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Year:  2012        PMID: 22621369     DOI: 10.1021/ja301667n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

Review 1.  Small angle neutron scattering for the study of solubilised membrane proteins.

Authors:  Cécile Breyton; Frank Gabel; Mathilde Lethier; Ali Flayhan; Grégory Durand; Jean-Michel Jault; Céline Juillan-Binard; Lionel Imbert; Martine Moulin; Stéphanie Ravaud; Michael Härtlein; Christine Ebel
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

Review 2.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

3.  Probing the conformation of FhaC with small-angle neutron scattering and molecular modeling.

Authors:  Frank Gabel; Marc F Lensink; Bernard Clantin; Françoise Jacob-Dubuisson; Vincent Villeret; Christine Ebel
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

4.  Shape matters in protein mobility within membranes.

Authors:  François Quemeneur; Jon K Sigurdsson; Marianne Renner; Paul J Atzberger; Patricia Bassereau; David Lacoste
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-24       Impact factor: 11.205

5.  Low-Resolution Structure of Detergent-Solubilized Membrane Proteins from Small-Angle Scattering Data.

Authors:  Alexandros Koutsioubas
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

6.  Membrane shape modulates transmembrane protein distribution.

Authors:  Sophie Aimon; Andrew Callan-Jones; Alice Berthaud; Mathieu Pinot; Gilman E S Toombes; Patricia Bassereau
Journal:  Dev Cell       Date:  2014-01-27       Impact factor: 12.270

7.  Domain Movements upon Activation of Phenylalanine Hydroxylase Characterized by Crystallography and Chromatography-Coupled Small-Angle X-ray Scattering.

Authors:  Steve P Meisburger; Alexander B Taylor; Crystal A Khan; Shengnan Zhang; Paul F Fitzpatrick; Nozomi Ando
Journal:  J Am Chem Soc       Date:  2016-05-12       Impact factor: 15.419

8.  Methods for SAXS-based structure determination of biomolecular complexes.

Authors:  Sichun Yang
Journal:  Adv Mater       Date:  2014-05-30       Impact factor: 30.849

9.  Protein unfolding by SDS: the microscopic mechanisms and the properties of the SDS-protein assembly.

Authors:  David Winogradoff; Shalini John; Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2020-02-21       Impact factor: 7.790

10.  Memprot: a program to model the detergent corona around a membrane protein based on SEC-SAXS data.

Authors:  Javier Pérez; Alexandros Koutsioubas
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01
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