Literature DB >> 21522323

5-Nitro-1-n-octyl-1H-benzimidazol-2(3H)-one.

Younes Ouzidan, Y Kandri Rodi, Natalie Saffon, El Mokhtar Essassi, Seik Weng Ng.   

Abstract

The benzimidazolone part of the mol-ecule of the title compound, C(15)H(21)N(3)O(3), is almost planar (r.m.s. deviation = 0.007 Å) with its mean plane aligned at a dihedral angle of 10.4 (3)° with respect to the mean plane of the nitro substituent. In the crystal, two mol-ecules are disposed about a center of inversion, generating an N-H⋯O hydrogen-bonded cyclic dimer with R(2) (2)(8) graph-set motif.

Entities:  

Year:  2011        PMID: 21522323      PMCID: PMC3052093          DOI: 10.1107/S1600536811003503

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of 1-isopropenyl-1H-benzimidazol-2(3H)-one, see: Saber et al. (2010 ▶). For graph-set notation, see: Etter (1990 ▶).

Experimental

Crystal data

C15H21N3O3 M = 291.35 Triclinic, a = 4.9997 (3) Å b = 11.4942 (6) Å c = 13.8739 (7) Å α = 74.214 (3)° β = 79.637 (4)° γ = 84.108 (4)° V = 753.50 (7) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.22 × 0.12 × 0.06 mm

Data collection

Bruker APEXII diffractometer 10215 measured reflections 3084 independent reflections 1538 reflections with I > 2σ(I) R int = 0.080

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.144 S = 0.95 3084 reflections 195 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811003503/zs2090sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003503/zs2090Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H21N3O3Z = 2
Mr = 291.35F(000) = 312
Triclinic, P1Dx = 1.284 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.9997 (3) ÅCell parameters from 926 reflections
b = 11.4942 (6) Åθ = 2.1–26.5°
c = 13.8739 (7) ŵ = 0.09 mm1
α = 74.214 (3)°T = 295 K
β = 79.637 (4)°Block, colorless
γ = 84.108 (4)°0.22 × 0.12 × 0.06 mm
V = 753.50 (7) Å3
Bruker APEXII diffractometer1538 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.080
graphiteθmax = 26.5°, θmin = 2.1°
φ and ω scansh = −5→6
10215 measured reflectionsk = −14→14
3084 independent reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.144w = 1/[σ2(Fo2) + (0.0609P)2] where P = (Fo2 + 2Fc2)/3
S = 0.95(Δ/σ)max = 0.001
3084 reflectionsΔρmax = 0.21 e Å3
195 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.016 (4)
xyzUiso*/Ueq
O10.6268 (4)0.47630 (17)0.37325 (14)0.0426 (5)
O2−0.5372 (4)0.15689 (19)0.72705 (15)0.0534 (6)
O3−0.5678 (4)0.02018 (19)0.64945 (15)0.0534 (6)
N10.3626 (4)0.32787 (19)0.35991 (16)0.0325 (6)
N20.2757 (5)0.3907 (2)0.50001 (18)0.0351 (6)
N3−0.4666 (5)0.1112 (2)0.65519 (18)0.0407 (6)
C10.1487 (5)0.2628 (2)0.42194 (19)0.0299 (6)
C20.0021 (5)0.1746 (2)0.4085 (2)0.0341 (7)
H20.03870.14910.34910.041*
C3−0.2003 (5)0.1257 (2)0.48628 (19)0.0336 (7)
H3−0.30340.06600.48000.040*
C4−0.2502 (5)0.1658 (2)0.57430 (19)0.0324 (6)
C5−0.1062 (5)0.2549 (2)0.58994 (19)0.0339 (7)
H5−0.14330.28020.64940.041*
C60.0937 (5)0.3025 (2)0.51182 (19)0.0316 (7)
C70.4414 (6)0.4067 (3)0.4080 (2)0.0364 (7)
C80.4867 (6)0.3212 (3)0.25805 (19)0.0399 (7)
H8A0.51280.23700.25630.048*
H8B0.66440.35490.24170.048*
C90.3124 (6)0.3898 (2)0.17815 (19)0.0381 (7)
H9A0.41300.39080.11130.046*
H9B0.14880.34690.18720.046*
C100.2313 (6)0.5199 (2)0.1835 (2)0.0407 (7)
H10A0.11830.51810.24840.049*
H10B0.39470.56020.18060.049*
C110.0788 (6)0.5937 (3)0.0999 (2)0.0429 (8)
H11A−0.07210.54900.09640.051*
H11B0.19970.60620.03540.051*
C12−0.0298 (6)0.7161 (3)0.1179 (2)0.0491 (8)
H12A0.12150.75810.12480.059*
H12B−0.15430.70240.18160.059*
C13−0.1770 (6)0.7985 (3)0.0349 (2)0.0507 (9)
H13A−0.31210.75280.02130.061*
H13B−0.27290.86470.06010.061*
C140.0045 (6)0.8505 (3)−0.0629 (2)0.0509 (8)
H14A0.09160.7847−0.09080.061*
H14B0.14630.8924−0.04920.061*
C15−0.1477 (7)0.9384 (3)−0.1419 (2)0.0608 (10)
H15A−0.02200.9683−0.20270.091*
H15B−0.23011.0050−0.11560.091*
H15C−0.28640.8972−0.15680.091*
H10.296 (6)0.428 (3)0.549 (2)0.059 (10)*
U11U22U33U12U13U23
O10.0398 (12)0.0451 (12)0.0468 (12)−0.0145 (11)−0.0018 (10)−0.0170 (10)
O20.0546 (14)0.0572 (14)0.0491 (13)−0.0085 (12)0.0087 (11)−0.0240 (11)
O30.0546 (14)0.0502 (14)0.0571 (14)−0.0244 (12)0.0059 (11)−0.0184 (11)
N10.0301 (13)0.0333 (13)0.0366 (13)−0.0044 (11)−0.0056 (11)−0.0123 (10)
N20.0323 (13)0.0398 (14)0.0369 (14)−0.0067 (11)−0.0038 (11)−0.0153 (11)
N30.0350 (14)0.0398 (15)0.0446 (15)−0.0036 (12)−0.0038 (12)−0.0074 (12)
C10.0253 (15)0.0291 (15)0.0350 (15)−0.0002 (13)−0.0035 (12)−0.0089 (12)
C20.0343 (16)0.0342 (16)0.0353 (15)0.0021 (13)−0.0053 (13)−0.0129 (12)
C30.0337 (16)0.0302 (15)0.0402 (16)−0.0038 (13)−0.0076 (13)−0.0127 (13)
C40.0276 (15)0.0311 (15)0.0357 (15)−0.0002 (13)−0.0033 (12)−0.0058 (12)
C50.0327 (16)0.0371 (16)0.0327 (15)0.0001 (14)−0.0044 (13)−0.0119 (13)
C60.0306 (15)0.0303 (15)0.0371 (16)0.0002 (13)−0.0102 (13)−0.0115 (12)
C70.0348 (17)0.0355 (16)0.0426 (17)−0.0001 (14)−0.0136 (14)−0.0123 (14)
C80.0335 (16)0.0457 (18)0.0409 (17)−0.0014 (14)−0.0004 (13)−0.0159 (14)
C90.0344 (16)0.0467 (18)0.0353 (16)−0.0033 (14)0.0021 (13)−0.0186 (13)
C100.0399 (17)0.0428 (17)0.0394 (16)−0.0041 (14)−0.0029 (14)−0.0121 (13)
C110.0412 (17)0.0477 (18)0.0393 (16)−0.0004 (15)−0.0021 (14)−0.0142 (14)
C120.055 (2)0.0479 (19)0.0447 (18)0.0084 (16)−0.0101 (15)−0.0150 (15)
C130.051 (2)0.051 (2)0.0470 (18)0.0069 (16)−0.0025 (16)−0.0134 (15)
C140.0452 (19)0.054 (2)0.0514 (19)−0.0034 (16)−0.0071 (16)−0.0098 (16)
C150.063 (2)0.061 (2)0.053 (2)−0.0012 (19)−0.0071 (18)−0.0094 (17)
O1—C71.230 (3)C9—C101.526 (4)
O2—N31.231 (3)C9—H9A0.9700
O3—N31.235 (3)C9—H9B0.9700
N1—C71.385 (3)C10—C111.515 (4)
N1—C11.388 (3)C10—H10A0.9700
N1—C81.457 (3)C10—H10B0.9700
N2—C71.368 (3)C11—C121.524 (4)
N2—C61.389 (3)C11—H11A0.9700
N2—H10.93 (3)C11—H11B0.9700
N3—C41.464 (3)C12—C131.527 (4)
C1—C21.380 (4)C12—H12A0.9700
C1—C61.414 (3)C12—H12B0.9700
C2—C31.378 (4)C13—C141.500 (4)
C2—H20.9300C13—H13A0.9700
C3—C41.392 (4)C13—H13B0.9700
C3—H30.9300C14—C151.529 (4)
C4—C51.394 (4)C14—H14A0.9700
C5—C61.369 (4)C14—H14B0.9700
C5—H50.9300C15—H15A0.9600
C8—C91.530 (3)C15—H15B0.9600
C8—H8A0.9700C15—H15C0.9600
C8—H8B0.9700
C7—N1—C1109.6 (2)C10—C9—H9B108.9
C7—N1—C8123.1 (2)C8—C9—H9B108.9
C1—N1—C8127.3 (2)H9A—C9—H9B107.8
C7—N2—C6110.3 (2)C11—C10—C9114.5 (2)
C7—N2—H1123.8 (19)C11—C10—H10A108.6
C6—N2—H1125.6 (19)C9—C10—H10A108.6
O2—N3—O3122.7 (2)C11—C10—H10B108.6
O2—N3—C4118.5 (3)C9—C10—H10B108.6
O3—N3—C4118.8 (2)H10A—C10—H10B107.6
C2—C1—N1131.6 (2)C10—C11—C12111.7 (2)
C2—C1—C6121.5 (2)C10—C11—H11A109.3
N1—C1—C6106.8 (2)C12—C11—H11A109.3
C3—C2—C1117.6 (3)C10—C11—H11B109.3
C3—C2—H2121.2C12—C11—H11B109.3
C1—C2—H2121.2H11A—C11—H11B107.9
C2—C3—C4119.8 (3)C11—C12—C13115.1 (2)
C2—C3—H3120.1C11—C12—H12A108.5
C4—C3—H3120.1C13—C12—H12A108.5
C3—C4—C5123.8 (3)C11—C12—H12B108.5
C3—C4—N3118.1 (3)C13—C12—H12B108.5
C5—C4—N3118.0 (2)H12A—C12—H12B107.5
C6—C5—C4115.4 (2)C14—C13—C12114.8 (2)
C6—C5—H5122.3C14—C13—H13A108.6
C4—C5—H5122.3C12—C13—H13A108.6
C5—C6—N2131.8 (3)C14—C13—H13B108.6
C5—C6—C1121.7 (3)C12—C13—H13B108.6
N2—C6—C1106.5 (2)H13A—C13—H13B107.6
O1—C7—N2127.7 (3)C13—C14—C15113.2 (2)
O1—C7—N1125.5 (3)C13—C14—H14A108.9
N2—C7—N1106.8 (3)C15—C14—H14A108.9
N1—C8—C9112.1 (2)C13—C14—H14B108.9
N1—C8—H8A109.2C15—C14—H14B108.9
C9—C8—H8A109.2H14A—C14—H14B107.8
N1—C8—H8B109.2C14—C15—H15A109.5
C9—C8—H8B109.2C14—C15—H15B109.5
H8A—C8—H8B107.9H15A—C15—H15B109.5
C10—C9—C8113.2 (2)C14—C15—H15C109.5
C10—C9—H9A108.9H15A—C15—H15C109.5
C8—C9—H9A108.9H15B—C15—H15C109.5
C7—N1—C1—C2−179.8 (3)C2—C1—C6—C50.4 (4)
C8—N1—C1—C22.2 (4)N1—C1—C6—C5−179.3 (2)
C7—N1—C1—C6−0.2 (3)C2—C1—C6—N2−179.9 (2)
C8—N1—C1—C6−178.2 (2)N1—C1—C6—N20.5 (3)
N1—C1—C2—C3179.3 (2)C6—N2—C7—O1−179.2 (3)
C6—C1—C2—C3−0.3 (3)C6—N2—C7—N10.4 (3)
C1—C2—C3—C40.0 (4)C1—N1—C7—O1179.5 (2)
C2—C3—C4—C50.1 (4)C8—N1—C7—O1−2.4 (4)
C2—C3—C4—N3−179.8 (2)C1—N1—C7—N2−0.1 (3)
O2—N3—C4—C3−170.3 (2)C8—N1—C7—N2177.9 (2)
O3—N3—C4—C310.9 (3)C7—N1—C8—C9−100.3 (3)
O2—N3—C4—C59.7 (3)C1—N1—C8—C977.4 (3)
O3—N3—C4—C5−169.1 (2)N1—C8—C9—C1052.0 (3)
C3—C4—C5—C60.0 (4)C8—C9—C10—C11175.1 (2)
N3—C4—C5—C6179.9 (2)C9—C10—C11—C12172.1 (3)
C4—C5—C6—N2−179.9 (2)C10—C11—C12—C13177.7 (3)
C4—C5—C6—C1−0.2 (3)C11—C12—C13—C14−71.2 (4)
C7—N2—C6—C5179.2 (3)C12—C13—C14—C15−176.5 (3)
C7—N2—C6—C1−0.6 (3)
D—H···AD—HH···AD···AD—H···A
N2—H1···O1i0.93 (3)1.84 (3)2.755 (3)169 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1⋯O1i0.93 (3)1.84 (3)2.755 (3)169 (3)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Isopropenyl-1H-1,3-benzimidazol-2(3H)-one.

Authors:  Asmaa Saber; Hafid Zouihri; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-22
  2 in total
  3 in total

1.  5-Nitro-1-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one.

Authors:  Younes Ouzidan; Youssef Kandri Rodi; Hafid Zouihri; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-31

2.  1-n-Decyl-5-nitro-1H-benzimidazol-2(3H)-one.

Authors:  Younes Ouzidan; Y Kandri Rodi; Sonia Ladeira; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

3.  2-(4-Nitro-benzyl-idene)malononitrile.

Authors:  Ming-Jen Chang; Tzu-Chien Fang; Hsing-Yang Tsai; Ming-Hui Luo; Kew-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.