Literature DB >> 22606159

2-(4-Isobutyl-phen-yl)-N'-[(3Z)-2-oxoindolin-3-yl-idene]propano-hydrazide.

Shaaban K Mohamed, Mehmet Akkurt, Mustafa R Albayati, Kuldip Singh, Herman Potgieter.   

Abstract

In the title compound, C(21)H(23)N(3)O(2), the indolin-2-one group is essentially planar, with a maximum deviation of 0.016 (2) Å for the N atom, and makes a dihedral angle of 84.38 (14)° with the benzene ring. The =N-N(H)-C(=O)-C- torsion angle is 0.9 (3)°. In the crystal, mol-ecules are linked into a three-dimensional network via N-H⋯O and C-H⋯O hydrogen bonds. In addition, a C-H⋯π inter-action was observed.

Entities:  

Year:  2012        PMID: 22606159      PMCID: PMC3344156          DOI: 10.1107/S160053681201269X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical applications of hydrazones, see: Bedia et al. (2006 ▶); Rollas et al. (2002 ▶). For the pharmaceutical applications of ibuprofen, see: Palaska et al. (2002 ▶). For the synthesis of hydrazones, see: Rollas & Küçükgüzel (2007 ▶). For some of our studies on the synthesis of biologically active compounds, see: Mohamed et al. (2012a ▶,b ▶); Soliman et al. (2012 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C21H23N3O2 M = 349.42 Monoclinic, a = 30.366 (14) Å b = 7.383 (3) Å c = 21.904 (10) Å β = 130.311 (8)° V = 3745 (3) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 150 K 0.35 × 0.21 × 0.10 mm

Data collection

Bruker APEX 2000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.972, T max = 0.992 15933 measured reflections 4494 independent reflections 2050 reflections with I > 2σ(I) R int = 0.096

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.182 S = 0.89 4494 reflections 223 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201269X/hg5199sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201269X/hg5199Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201269X/hg5199Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H23N3O2F(000) = 1488
Mr = 349.42Dx = 1.240 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 654 reflections
a = 30.366 (14) Åθ = 2.9–23.4°
b = 7.383 (3) ŵ = 0.08 mm1
c = 21.904 (10) ÅT = 150 K
β = 130.311 (8)°Plate, yellow
V = 3745 (3) Å30.35 × 0.21 × 0.10 mm
Z = 8
Bruker APEX 2000 CCD area-detector diffractometer4494 independent reflections
Radiation source: fine-focus sealed tube2050 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.096
phi and ω scansθmax = 28.7°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −40→39
Tmin = 0.972, Tmax = 0.992k = −9→9
15933 measured reflectionsl = −29→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.067Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.182H-atom parameters constrained
S = 0.89w = 1/[σ2(Fo2) + (0.0771P)2] where P = (Fo2 + 2Fc2)/3
4494 reflections(Δ/σ)max < 0.001
223 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.27378 (8)0.1979 (3)0.28135 (11)0.0610 (8)
O20.30262 (7)−0.3536 (2)0.51498 (11)0.0551 (7)
N10.21763 (9)0.3981 (3)0.28414 (12)0.0513 (8)
N20.26682 (8)−0.0134 (3)0.38256 (12)0.0441 (7)
N30.26590 (8)−0.1154 (3)0.43261 (12)0.0438 (7)
C10.19248 (10)0.4090 (3)0.31931 (14)0.0449 (9)
C20.16039 (11)0.5488 (4)0.31409 (15)0.0536 (9)
C30.13834 (11)0.5291 (4)0.35241 (16)0.0552 (10)
C40.14805 (11)0.3748 (4)0.39497 (16)0.0518 (10)
C50.18120 (10)0.2344 (3)0.40110 (14)0.0462 (8)
C60.20363 (9)0.2513 (3)0.36274 (13)0.0406 (8)
C70.23936 (10)0.1382 (3)0.35482 (14)0.0426 (8)
C80.24645 (11)0.2419 (4)0.30246 (15)0.0480 (9)
C90.30217 (10)−0.2603 (3)0.46825 (15)0.0445 (8)
C100.34176 (10)−0.2953 (3)0.45024 (15)0.0469 (9)
C110.36252 (12)−0.4915 (4)0.47037 (18)0.0631 (11)
C120.39149 (10)−0.1604 (3)0.49514 (16)0.0445 (9)
C130.43620 (11)−0.1733 (4)0.57647 (16)0.0511 (10)
C140.48254 (11)−0.0548 (4)0.61611 (17)0.0571 (10)
C150.48610 (12)0.0796 (4)0.57581 (19)0.0556 (10)
C160.44102 (12)0.0942 (4)0.49473 (19)0.0583 (11)
C170.39438 (12)−0.0220 (4)0.45516 (17)0.0533 (10)
C180.53791 (12)0.2047 (4)0.6173 (2)0.0705 (13)
C190.52905 (13)0.3956 (4)0.63358 (19)0.0679 (7)
C200.58104 (12)0.5126 (4)0.66581 (18)0.0679 (7)
C210.51718 (12)0.3939 (4)0.68999 (18)0.0679 (7)
H10.215000.481100.254400.0620*
H20.153700.653500.285600.0640*
H30.116400.622200.349500.0660*
H3A0.24300−0.089900.441800.0530*
H40.132300.364500.419800.0620*
H50.188200.130900.430400.0550*
H100.31960−0.277400.392700.0560*
H11A0.38740−0.513600.458400.0950*
H11B0.32980−0.571300.439100.0950*
H11C0.38340−0.512900.526300.0950*
H130.43530−0.263300.605300.0610*
H140.51190−0.066200.671200.0690*
H160.442000.184300.466000.0700*
H170.36430−0.007100.400500.0640*
H18A0.549000.212700.584700.0850*
H18B0.569900.150200.667900.0850*
H190.495400.447800.582700.0810*
H20A0.587500.513400.628300.1020*
H20B0.614400.464600.716100.1020*
H20C0.574100.634000.673500.1020*
H21A0.483900.320300.668200.1020*
H21B0.510100.515300.697500.1020*
H21C0.549900.345000.740600.1020*
U11U22U33U12U13U23
O10.0792 (14)0.0562 (13)0.0671 (13)0.0042 (10)0.0561 (12)−0.0018 (10)
O20.0503 (11)0.0447 (11)0.0692 (13)0.0100 (8)0.0381 (10)0.0125 (10)
N10.0603 (14)0.0449 (14)0.0494 (13)0.0086 (11)0.0358 (12)0.0091 (11)
N20.0440 (12)0.0377 (13)0.0491 (12)0.0025 (10)0.0294 (11)−0.0028 (10)
N30.0415 (12)0.0376 (12)0.0540 (13)0.0078 (9)0.0316 (11)0.0026 (10)
C10.0454 (15)0.0418 (16)0.0387 (14)0.0060 (12)0.0232 (13)−0.0001 (12)
C20.0568 (16)0.0387 (16)0.0482 (16)0.0117 (13)0.0263 (14)0.0041 (13)
C30.0562 (17)0.0466 (17)0.0532 (16)0.0140 (13)0.0311 (15)−0.0016 (14)
C40.0547 (16)0.0478 (17)0.0545 (17)0.0088 (13)0.0360 (14)−0.0005 (14)
C50.0448 (14)0.0406 (15)0.0456 (14)0.0058 (12)0.0258 (13)−0.0013 (12)
C60.0394 (13)0.0342 (14)0.0396 (13)0.0044 (11)0.0217 (12)−0.0016 (11)
C70.0417 (14)0.0358 (14)0.0417 (14)0.0020 (11)0.0231 (12)−0.0029 (11)
C80.0532 (16)0.0434 (16)0.0435 (14)0.0009 (13)0.0295 (14)−0.0058 (13)
C90.0387 (14)0.0336 (14)0.0517 (15)0.0017 (11)0.0250 (13)−0.0039 (13)
C100.0461 (15)0.0420 (16)0.0503 (15)0.0079 (12)0.0302 (13)−0.0044 (12)
C110.0606 (18)0.0435 (18)0.081 (2)0.0089 (14)0.0439 (17)−0.0083 (15)
C120.0421 (14)0.0431 (16)0.0563 (16)0.0105 (12)0.0354 (14)−0.0026 (13)
C130.0471 (15)0.0458 (17)0.0614 (18)0.0061 (13)0.0356 (15)0.0005 (14)
C140.0444 (16)0.0588 (19)0.0588 (17)0.0081 (14)0.0292 (15)−0.0030 (15)
C150.0484 (16)0.0472 (18)0.079 (2)0.0078 (13)0.0447 (17)−0.0033 (15)
C160.0610 (18)0.0468 (18)0.081 (2)0.0095 (14)0.0522 (18)0.0074 (16)
C170.0545 (17)0.0521 (18)0.0603 (17)0.0114 (14)0.0403 (15)0.0012 (15)
C180.0526 (17)0.058 (2)0.104 (3)0.0077 (15)0.0520 (19)−0.0014 (18)
C190.0653 (11)0.0599 (12)0.0753 (12)0.0005 (9)0.0441 (10)0.0013 (10)
C200.0653 (11)0.0599 (12)0.0753 (12)0.0005 (9)0.0441 (10)0.0013 (10)
C210.0653 (11)0.0599 (12)0.0753 (12)0.0005 (9)0.0441 (10)0.0013 (10)
O1—C81.227 (5)C16—C171.380 (5)
O2—C91.227 (4)C18—C191.520 (5)
N1—C11.394 (5)C19—C211.494 (6)
N1—C81.343 (4)C19—C201.515 (6)
N2—N31.345 (3)C2—H20.9300
N2—C71.289 (3)C3—H30.9300
N3—C91.362 (4)C4—H40.9300
N1—H10.8600C5—H50.9300
N3—H3A0.8600C10—H100.9800
C1—C61.399 (3)C11—H11A0.9600
C1—C21.373 (5)C11—H11B0.9600
C2—C31.379 (5)C11—H11C0.9600
C3—C41.378 (4)C13—H130.9300
C4—C51.390 (5)C14—H140.9300
C5—C61.388 (5)C16—H160.9300
C6—C71.466 (4)C17—H170.9300
C7—C81.506 (4)C18—H18A0.9700
C9—C101.510 (5)C18—H18B0.9700
C10—C121.523 (4)C19—H190.9800
C10—C111.527 (4)C20—H20A0.9600
C12—C131.377 (4)C20—H20B0.9600
C12—C171.385 (4)C20—H20C0.9600
C13—C141.385 (5)C21—H21A0.9600
C14—C151.378 (5)C21—H21B0.9600
C15—C181.518 (5)C21—H21C0.9600
C15—C161.376 (5)
C1—N1—C8111.6 (2)C3—C2—H2121.00
N3—N2—C7121.5 (3)C2—C3—H3119.00
N2—N3—C9118.1 (3)C4—C3—H3119.00
C8—N1—H1124.00C3—C4—H4120.00
C1—N1—H1124.00C5—C4—H4120.00
C9—N3—H3A121.00C4—C5—H5121.00
N2—N3—H3A121.00C6—C5—H5121.00
N1—C1—C2127.6 (2)C9—C10—H10108.00
C2—C1—C6121.9 (3)C11—C10—H10108.00
N1—C1—C6110.5 (2)C12—C10—H10108.00
C1—C2—C3117.9 (3)C10—C11—H11A109.00
C2—C3—C4121.6 (3)C10—C11—H11B109.00
C3—C4—C5120.5 (3)C10—C11—H11C109.00
C4—C5—C6118.9 (2)H11A—C11—H11B110.00
C1—C6—C7105.4 (3)H11A—C11—H11C109.00
C5—C6—C7135.3 (2)H11B—C11—H11C109.00
C1—C6—C5119.3 (3)C12—C13—H13119.00
N2—C7—C8115.7 (3)C14—C13—H13119.00
C6—C7—C8106.4 (2)C13—C14—H14119.00
N2—C7—C6137.9 (3)C15—C14—H14119.00
O1—C8—N1125.7 (3)C15—C16—H16119.00
O1—C8—C7128.1 (3)C17—C16—H16119.00
N1—C8—C7106.1 (3)C12—C17—H17119.00
O2—C9—N3119.2 (3)C16—C17—H17119.00
N3—C9—C10118.0 (2)C15—C18—H18A108.00
O2—C9—C10122.7 (2)C15—C18—H18B108.00
C9—C10—C11109.7 (3)C19—C18—H18A108.00
C9—C10—C12110.1 (2)C19—C18—H18B108.00
C11—C10—C12112.5 (3)H18A—C18—H18B107.00
C13—C12—C17117.2 (3)C18—C19—H19108.00
C10—C12—C13121.8 (3)C20—C19—H19108.00
C10—C12—C17121.1 (2)C21—C19—H19108.00
C12—C13—C14121.3 (3)C19—C20—H20A109.00
C13—C14—C15121.5 (3)C19—C20—H20B109.00
C14—C15—C16117.3 (3)C19—C20—H20C109.00
C14—C15—C18122.4 (3)H20A—C20—H20B110.00
C16—C15—C18120.4 (3)H20A—C20—H20C110.00
C15—C16—C17121.4 (3)H20B—C20—H20C109.00
C12—C17—C16121.4 (3)C19—C21—H21A109.00
C15—C18—C19115.6 (4)C19—C21—H21B110.00
C18—C19—C21111.1 (3)C19—C21—H21C110.00
C20—C19—C21110.8 (3)H21A—C21—H21B109.00
C18—C19—C20110.4 (4)H21A—C21—H21C109.00
C1—C2—H2121.00H21B—C21—H21C109.00
C1—N1—C8—C70.3 (3)C6—C7—C8—O1179.0 (3)
C8—N1—C1—C2179.5 (3)C6—C7—C8—N10.5 (3)
C8—N1—C1—C6−1.1 (3)N2—C7—C8—O12.1 (4)
C1—N1—C8—O1−178.2 (3)O2—C9—C10—C1121.8 (3)
N3—N2—C7—C8177.3 (2)O2—C9—C10—C12−102.5 (3)
C7—N2—N3—C9−171.0 (2)N3—C9—C10—C11−160.3 (2)
N3—N2—C7—C61.7 (5)N3—C9—C10—C1275.4 (3)
N2—N3—C9—C100.9 (3)C9—C10—C12—C1373.9 (4)
N2—N3—C9—O2179.0 (2)C9—C10—C12—C17−108.0 (3)
N1—C1—C6—C71.4 (3)C11—C10—C12—C13−48.8 (4)
C2—C1—C6—C50.7 (4)C11—C10—C12—C17129.4 (3)
C2—C1—C6—C7−179.2 (2)C10—C12—C13—C14177.0 (3)
N1—C1—C6—C5−178.8 (2)C17—C12—C13—C14−1.2 (5)
C6—C1—C2—C3−0.9 (4)C10—C12—C17—C16−176.1 (3)
N1—C1—C2—C3178.5 (3)C13—C12—C17—C162.1 (5)
C1—C2—C3—C40.2 (4)C12—C13—C14—C15−0.6 (6)
C2—C3—C4—C50.7 (5)C13—C14—C15—C161.5 (6)
C3—C4—C5—C6−0.9 (4)C13—C14—C15—C18−176.8 (4)
C4—C5—C6—C7−180.0 (3)C14—C15—C16—C17−0.6 (6)
C4—C5—C6—C10.2 (4)C18—C15—C16—C17177.7 (4)
C1—C6—C7—C8−1.2 (3)C14—C15—C18—C19−104.2 (4)
C5—C6—C7—C8179.1 (3)C16—C15—C18—C1977.6 (5)
C5—C6—C7—N2−5.1 (6)C15—C16—C17—C12−1.2 (6)
C1—C6—C7—N2174.7 (3)C15—C18—C19—C20−173.2 (3)
N2—C7—C8—N1−176.4 (2)C15—C18—C19—C2163.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.861.912.740 (4)163
N3—H3A···O2ii0.862.162.965 (4)155
C5—H5···O2ii0.932.303.218 (3)172
C11—H11B···Cg1iii0.962.773.703 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/C1/C6–C8 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.861.912.740 (4)163
N3—H3A⋯O2ii0.862.162.965 (4)155
C5—H5⋯O2ii0.932.303.218 (3)172
C11—H11BCg1iii0.962.773.703 (4)164

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and anti-inflammatory activity of 1-acylthiosemicarbazides, 1,3,4-oxadiazoles, 1,3,4-thiadiazoles and 1,2,4-triazole-3-thiones.

Authors:  Erhan Palaska; Gülay Sahin; Pelin Kelicen; N Tuğba Durlu; Gülçin Altinok
Journal:  Farmaco       Date:  2002-02

3.  Synthesis and antimicrobial activity of some new hydrazones of 4-fluorobenzoic acid hydrazide and 3-acetyl-2,5-disubstituted-1,3,4-oxadiazolines.

Authors:  Sevim Rollas; Nehir Gulerman; Habibe Erdeniz
Journal:  Farmaco       Date:  2002-02

4.  Synthesis and characterization of novel hydrazide-hydrazones and the study of their structure-antituberculosis activity.

Authors:  Koçyiğit-Kaymakçioğlu Bedia; Oruç Elçin; Unsalan Seda; Kandemirli Fatma; Shvets Nathaly; Rollas Sevim; Anatholy Dimoglo
Journal:  Eur J Med Chem       Date:  2006-08-17       Impact factor: 6.514

5.  Synthesis and biological activity of dihydroimidazole and 3,4-dihydrobenzo[4,5]imidazo[1,2-a][1,3,5]triazins.

Authors:  Ahmed M Soliman; Shaaban K Mohamed; Mahmoud A A El Remaily; H Abdel-Ghany
Journal:  Eur J Med Chem       Date:  2011-10-25       Impact factor: 6.514

Review 6.  Biological activities of hydrazone derivatives.

Authors:  Sevim Rollas; S Güniz Küçükgüzel
Journal:  Molecules       Date:  2007-08-17       Impact factor: 4.411

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  1 in total

1.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-2-(4-isobutyl-phen-yl)propano-hydrazide.

Authors:  Shaaban K Mohamed; Peter N Horton; Mehmet Akkurt; Mustafa R Albayati; Antar A Abdelhamid
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07
  1 in total

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