Literature DB >> 22606153

Benzyl 2-methyl-3-[(E)-(thio-phen-2-yl)methyl-idene]dithio-carbazate.

Saroj K S Hazari, B K Dey, Tapashi G Roy, B Ganguly, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(14)H(14)N(2)S(3), the thione S atom and methyl group are syn, as are the two thio-ether S atoms. The mol-ecule is twisted, the dihedral angles between the central (C(2)N(2)S(2)) residue and the pendent 2-thienyl and phenyl rings being 21.57 (6) and 77.54 (3)°, respectively. In the crystal, mol-ecules assemble into a three-dimensional architecture via C-H⋯π inter-actions, involving both the five- and six-membered rings as acceptors, as well as S⋯S inter-actions [3.3406 (5) Å] between centrosymmetrically related 2-thienyl rings.

Entities:  

Year:  2012        PMID: 22606153      PMCID: PMC3344150          DOI: 10.1107/S1600536812012652

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related Schiff base compounds, see: Hazari et al. (2002 ▶). For a related structure, see: Scovill & Silverton (1980 ▶).

Experimental

Crystal data

C14H14N2S3 M = 306.45 Monoclinic, a = 6.0585 (1) Å b = 19.3774 (5) Å c = 12.5769 (3) Å β = 103.200 (2)° V = 1437.49 (6) Å3 Z = 4 Cu Kα radiation μ = 4.60 mm−1 T = 100 K 0.15 × 0.15 × 0.15 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.871, T max = 1.000 5742 measured reflections 2958 independent reflections 2746 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.080 S = 1.04 2958 reflections 173 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.50 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012652/hg5198sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012652/hg5198Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812012652/hg5198Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H14N2S3F(000) = 640
Mr = 306.45Dx = 1.416 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ynCell parameters from 3411 reflections
a = 6.0585 (1) Åθ = 3.6–76.3°
b = 19.3774 (5) ŵ = 4.60 mm1
c = 12.5769 (3) ÅT = 100 K
β = 103.200 (2)°Block, yellow-green
V = 1437.49 (6) Å30.15 × 0.15 × 0.15 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector2958 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2746 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.017
Detector resolution: 10.4041 pixels mm-1θmax = 76.5°, θmin = 4.3°
ω scanh = −7→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −21→24
Tmin = 0.871, Tmax = 1.000l = −14→15
5742 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0498P)2 + 0.373P] where P = (Fo2 + 2Fc2)/3
2958 reflections(Δ/σ)max = 0.001
173 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.38152 (6)0.42510 (2)0.02208 (3)0.02374 (11)
S20.98715 (5)0.412867 (18)0.30849 (3)0.01609 (10)
S31.13698 (6)0.28550 (2)0.44362 (3)0.02327 (11)
N10.6131 (2)0.34137 (6)0.21795 (9)0.0164 (2)
N20.7444 (2)0.30069 (6)0.29841 (9)0.0173 (2)
C10.1243 (3)0.43987 (9)−0.06539 (13)0.0309 (4)
H10.09950.4737−0.12150.037*
C2−0.0402 (3)0.39739 (10)−0.04503 (13)0.0308 (4)
H2−0.19310.3985−0.08550.037*
C30.0401 (3)0.35160 (8)0.04254 (12)0.0226 (3)
H3−0.05200.31850.06770.027*
C40.2703 (2)0.36066 (8)0.08760 (11)0.0176 (3)
C50.4082 (2)0.32207 (7)0.17652 (11)0.0171 (3)
H50.34790.28250.20440.020*
C60.6657 (3)0.23282 (8)0.32401 (13)0.0230 (3)
H6A0.78810.20900.37530.035*
H6B0.62110.20570.25680.035*
H6C0.53520.23820.35710.035*
C70.9478 (2)0.32789 (7)0.35022 (11)0.0161 (3)
C81.2618 (2)0.43443 (8)0.39547 (11)0.0182 (3)
H8A1.25690.43010.47330.022*
H8B1.37970.40280.38090.022*
C91.3146 (2)0.50761 (8)0.36994 (11)0.0167 (3)
C101.4672 (2)0.52084 (8)0.30438 (11)0.0186 (3)
H101.53290.48340.27370.022*
C111.5239 (3)0.58827 (8)0.28352 (12)0.0212 (3)
H111.62900.59670.23930.025*
C121.4274 (3)0.64340 (8)0.32713 (12)0.0217 (3)
H121.46630.68940.31290.026*
C131.2733 (3)0.63085 (8)0.39186 (12)0.0217 (3)
H131.20650.66840.42170.026*
C141.2175 (2)0.56349 (8)0.41276 (11)0.0204 (3)
H141.11200.55530.45680.025*
U11U22U33U12U13U23
S10.0266 (2)0.0239 (2)0.01970 (19)0.00074 (14)0.00326 (14)0.00408 (13)
S20.01503 (17)0.01798 (18)0.01359 (17)−0.00058 (12)−0.00020 (12)0.00121 (11)
S30.02006 (18)0.0231 (2)0.0235 (2)0.00380 (13)−0.00161 (14)0.00613 (14)
N10.0182 (6)0.0174 (6)0.0126 (5)0.0008 (4)0.0012 (4)0.0017 (4)
N20.0183 (6)0.0169 (6)0.0151 (5)−0.0003 (5)0.0005 (4)0.0031 (4)
C10.0414 (10)0.0315 (9)0.0169 (7)0.0162 (7)0.0005 (7)−0.0005 (6)
C20.0237 (8)0.0413 (10)0.0227 (8)0.0135 (7)−0.0043 (6)−0.0136 (7)
C30.0194 (7)0.0290 (8)0.0188 (7)−0.0013 (6)0.0030 (5)−0.0106 (6)
C40.0180 (6)0.0198 (7)0.0145 (6)−0.0010 (5)0.0028 (5)−0.0048 (5)
C50.0180 (6)0.0176 (6)0.0157 (6)−0.0028 (5)0.0041 (5)−0.0016 (5)
C60.0237 (7)0.0184 (7)0.0254 (7)−0.0028 (6)0.0025 (6)0.0057 (6)
C70.0160 (6)0.0190 (6)0.0139 (6)0.0016 (5)0.0044 (5)−0.0009 (5)
C80.0153 (6)0.0211 (7)0.0162 (6)0.0000 (5)−0.0008 (5)0.0001 (5)
C90.0136 (6)0.0208 (7)0.0130 (6)0.0006 (5)−0.0023 (5)−0.0002 (5)
C100.0168 (6)0.0221 (7)0.0161 (6)0.0031 (5)0.0023 (5)−0.0032 (5)
C110.0201 (7)0.0270 (8)0.0171 (7)−0.0013 (6)0.0056 (5)0.0003 (6)
C120.0229 (7)0.0215 (7)0.0186 (7)0.0000 (6)0.0007 (6)0.0014 (6)
C130.0234 (7)0.0217 (7)0.0194 (7)0.0051 (6)0.0038 (6)−0.0023 (5)
C140.0191 (7)0.0267 (8)0.0161 (6)0.0026 (6)0.0055 (5)−0.0007 (5)
S1—C11.7139 (17)C6—H6A0.9800
S1—C41.7164 (15)C6—H6B0.9800
S2—C71.7610 (15)C6—H6C0.9800
S2—C81.8188 (14)C8—C91.504 (2)
S3—C71.6594 (14)C8—H8A0.9900
N1—C51.2876 (18)C8—H8B0.9900
N1—N21.3821 (16)C9—C101.3960 (19)
N2—C71.3615 (18)C9—C141.398 (2)
N2—C61.4597 (18)C10—C111.391 (2)
C1—C21.362 (3)C10—H100.9500
C1—H10.9500C11—C121.389 (2)
C2—C31.412 (2)C11—H110.9500
C2—H20.9500C12—C131.393 (2)
C3—C41.3915 (19)C12—H120.9500
C3—H30.9500C13—C141.388 (2)
C4—C51.443 (2)C13—H130.9500
C5—H50.9500C14—H140.9500
C1—S1—C491.75 (8)N2—C7—S3123.41 (11)
C7—S2—C8101.72 (7)N2—C7—S2112.87 (10)
C5—N1—N2118.12 (12)S3—C7—S2123.72 (8)
C7—N2—N1115.86 (11)C9—C8—S2107.34 (9)
C7—N2—C6123.27 (12)C9—C8—H8A110.2
N1—N2—C6120.86 (11)S2—C8—H8A110.2
C2—C1—S1112.07 (13)C9—C8—H8B110.2
C2—C1—H1124.0S2—C8—H8B110.2
S1—C1—H1124.0H8A—C8—H8B108.5
C1—C2—C3112.96 (14)C10—C9—C14118.61 (14)
C1—C2—H2123.5C10—C9—C8120.07 (13)
C3—C2—H2123.5C14—C9—C8121.30 (13)
C4—C3—C2111.92 (15)C11—C10—C9120.62 (13)
C4—C3—H3124.0C11—C10—H10119.7
C2—C3—H3124.0C9—C10—H10119.7
C3—C4—C5126.83 (14)C12—C11—C10120.22 (14)
C3—C4—S1111.30 (11)C12—C11—H11119.9
C5—C4—S1121.87 (11)C10—C11—H11119.9
N1—C5—C4119.83 (13)C11—C12—C13119.67 (14)
N1—C5—H5120.1C11—C12—H12120.2
C4—C5—H5120.1C13—C12—H12120.2
N2—C6—H6A109.5C14—C13—C12119.97 (14)
N2—C6—H6B109.5C14—C13—H13120.0
H6A—C6—H6B109.5C12—C13—H13120.0
N2—C6—H6C109.5C13—C14—C9120.90 (13)
H6A—C6—H6C109.5C13—C14—H14119.6
H6B—C6—H6C109.5C9—C14—H14119.6
C5—N1—N2—C7−171.17 (12)C6—N2—C7—S2−175.83 (11)
C5—N1—N2—C69.13 (19)C8—S2—C7—N2177.56 (10)
C4—S1—C1—C20.23 (13)C8—S2—C7—S3−1.90 (10)
S1—C1—C2—C3−0.11 (18)C7—S2—C8—C9−178.59 (9)
C1—C2—C3—C4−0.10 (19)S2—C8—C9—C10−102.29 (13)
C2—C3—C4—C5−178.82 (13)S2—C8—C9—C1479.22 (14)
C2—C3—C4—S10.27 (16)C14—C9—C10—C110.9 (2)
C1—S1—C4—C3−0.28 (12)C8—C9—C10—C11−177.58 (13)
C1—S1—C4—C5178.86 (12)C9—C10—C11—C12−0.5 (2)
N2—N1—C5—C4−176.07 (12)C10—C11—C12—C130.0 (2)
C3—C4—C5—N1−172.02 (13)C11—C12—C13—C140.2 (2)
S1—C4—C5—N18.98 (19)C12—C13—C14—C90.2 (2)
N1—N2—C7—S3−176.06 (9)C10—C9—C14—C13−0.8 (2)
C6—N2—C7—S33.63 (19)C8—C9—C14—C13177.73 (13)
N1—N2—C7—S24.48 (15)
D—H···AD—HH···AD···AD—H···A
C6—H6A···Cg1i0.982.853.4021 (17)117
C8—H8A···Cg2ii0.992.803.4795 (15)127
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the S1,C1–C4 and C9–C14 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6ACg1i0.982.853.4021 (17)117
C8—H8ACg2ii0.992.803.4795 (15)127

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  3 in total

1.  Bis(2,S-dimethyl-dithio-carbazate-κ(2)N(3),S)(nitrato-κO)copper(II) nitrate.

Authors:  Saroj K S Hazari; B K Dey; B Ganguly; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

2.  Methyl 3-(2-hy-droxy-benzyl-idene)-2-methyl-dithio-carbazate.

Authors:  S K S Hazari; Sebastian Suarez; Biplab Ganguly; Fabio Doctorovich; Tapashi G Roy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25

3.  Benzyl 3-[(E)-(furan-2-yl)methyl-idene]-2-methyldithio-carbazate.

Authors:  Benu K Dey; Sebastian Suarez; Biplab Ganguly; Fabio Doctorovich; Tapashi G Roy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23
  3 in total

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