Literature DB >> 22590397

Methyl 3-(2-hy-droxy-benzyl-idene)-2-methyl-dithio-carbazate.

S K S Hazari, Sebastian Suarez, Biplab Ganguly, Fabio Doctorovich, Tapashi G Roy.   

Abstract

In the title compound, C(10)H(12)N(2)OS(2), the thione and S-methyl groups are syn. An intra-molecular bifurcated O-H⋯(S,N) hydrogen bond occurs.

Entities:  

Year:  2012        PMID: 22590397      PMCID: PMC3344635          DOI: 10.1107/S160053681201731X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of sulfur-ligand compounds, see: French & Blang (1965 ▶); Ali & Livingstone (1974 ▶); Ali et al. (1995 ▶); Hazari et al. (1999 ▶, 2002 ▶). For the synthesis and characterization of sulfur–nitro­gen-containing ligands, see: Hazari et al. (2002 ▶, 2006 ▶). For a related structure, see: Hazari et al. (2012 ▶).

Experimental

Crystal data

C10H12N2OS2 M = 240.34 Monoclinic, a = 11.3561 (16) Å b = 8.9033 (13) Å c = 11.5045 (16) Å β = 91.411 (13)° V = 1162.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.43 mm−1 T = 298 K 0.35 × 0.30 × 0.22 mm

Data collection

Oxford Diffraction Gemini CCD S Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.859, T max = 0.917 16680 measured reflections 2833 independent reflections 2039 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.171 S = 1.05 2833 reflections 144 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.41 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201731X/qm2064sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201731X/qm2064Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201731X/qm2064Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H12N2OS2F(000) = 504
Mr = 240.34Dx = 1.373 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 0 reflections
a = 11.3561 (16) Åθ = 4.0–29.1°
b = 8.9033 (13) ŵ = 0.43 mm1
c = 11.5045 (16) ÅT = 298 K
β = 91.411 (13)°Prism, colourless
V = 1162.8 (3) Å30.35 × 0.30 × 0.22 mm
Z = 4
Oxford Diffraction Gemini CCD S Ultra diffractometer2039 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.052
ω scansθmax = 29.1°, θmin = 4.0°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −14→15
Tmin = 0.859, Tmax = 0.917k = −11→11
16680 measured reflectionsl = −14→15
2833 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.171H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0801P)2 + 0.6976P] where P = (Fo2 + 2Fc2)/3
2833 reflections(Δ/σ)max < 0.001
144 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S20.74513 (6)0.31081 (8)0.59687 (6)0.0526 (2)
S10.88032 (7)0.14078 (11)0.78107 (8)0.0705 (3)
O10.47228 (19)0.2727 (3)0.4609 (2)0.0610 (6)
N10.56325 (18)0.1339 (2)0.64913 (17)0.0411 (5)
N20.65614 (19)0.0963 (2)0.72163 (18)0.0447 (5)
C60.3631 (2)0.1080 (3)0.5859 (2)0.0434 (5)
C70.4625 (2)0.0705 (3)0.6613 (2)0.0437 (6)
C10.3700 (2)0.2072 (3)0.4911 (2)0.0444 (6)
C80.6446 (3)−0.0200 (3)0.8097 (2)0.0582 (7)
H8A0.5658−0.05920.80670.087*
H8B0.66090.02210.88520.087*
H8C0.6994−0.09950.79520.087*
C50.2542 (2)0.0437 (4)0.6081 (3)0.0591 (7)
H50.2485−0.0240.66920.071*
C90.7587 (2)0.1735 (3)0.7057 (2)0.0449 (6)
C20.2700 (3)0.2389 (4)0.4249 (3)0.0578 (7)
H20.27450.30470.36240.069*
C30.1633 (3)0.1742 (4)0.4505 (3)0.0681 (9)
H30.09660.19640.40520.082*
C100.8904 (3)0.3907 (4)0.5977 (3)0.0668 (8)
H10A0.89350.4690.54050.1*
H10B0.94660.31410.57980.1*
H10C0.90870.43160.67320.1*
C40.1553 (3)0.0767 (4)0.5430 (3)0.0725 (9)
H40.08330.03390.5610.087*
H70.444 (3)0.007 (4)0.717 (3)0.082 (11)*
H1O0.527 (4)0.253 (5)0.518 (4)0.087 (12)*
U11U22U33U12U13U23
S20.0478 (4)0.0548 (4)0.0548 (4)−0.0099 (3)−0.0043 (3)0.0076 (3)
S10.0517 (5)0.0886 (6)0.0702 (5)0.0089 (4)−0.0151 (4)0.0073 (4)
O10.0498 (12)0.0718 (13)0.0614 (12)−0.0079 (10)0.0019 (10)0.0231 (11)
N10.0439 (11)0.0376 (10)0.0420 (10)0.0021 (8)0.0009 (8)0.0019 (8)
N20.0446 (11)0.0443 (11)0.0449 (11)0.0052 (9)−0.0033 (9)0.0064 (9)
C60.0461 (13)0.0399 (12)0.0444 (12)−0.0027 (10)0.0045 (10)−0.0078 (10)
C70.0509 (14)0.0382 (12)0.0424 (13)−0.0036 (10)0.0073 (10)0.0003 (10)
C10.0461 (14)0.0414 (12)0.0458 (13)0.0007 (10)0.0044 (10)−0.0043 (10)
C80.0687 (19)0.0524 (15)0.0535 (15)0.0052 (13)0.0018 (13)0.0158 (12)
C50.0512 (16)0.0632 (18)0.0629 (17)−0.0167 (13)0.0031 (13)0.0018 (14)
C90.0455 (14)0.0455 (13)0.0438 (13)0.0070 (10)0.0016 (10)−0.0048 (10)
C20.0597 (17)0.0575 (16)0.0558 (16)0.0069 (13)−0.0035 (13)−0.0027 (13)
C30.0525 (18)0.079 (2)0.072 (2)0.0066 (15)−0.0142 (15)−0.0106 (17)
C100.0519 (17)0.076 (2)0.073 (2)−0.0139 (15)0.0075 (15)0.0017 (16)
C40.0472 (17)0.088 (2)0.083 (2)−0.0162 (16)−0.0050 (15)−0.0018 (19)
S2—C91.754 (3)C8—H8A0.96
S2—C101.796 (3)C8—H8B0.96
S1—C91.639 (3)C8—H8C0.96
O1—C11.353 (3)C5—C41.366 (5)
O1—H1O0.91 (4)C5—H50.93
N1—C71.286 (3)C2—C31.380 (5)
N1—N21.370 (3)C2—H20.93
N2—C91.368 (3)C3—C41.378 (5)
N2—C81.457 (3)C3—H30.93
C6—C51.392 (4)C10—H10A0.96
C6—C11.408 (4)C10—H10B0.96
C6—C71.446 (4)C10—H10C0.96
C7—H70.89 (4)C4—H40.93
C1—C21.381 (4)
C9—S2—C10102.00 (15)C4—C5—C6122.2 (3)
C1—O1—H1O108 (3)C4—C5—H5118.9
C7—N1—N2120.0 (2)C6—C5—H5118.9
C9—N2—N1116.2 (2)N2—C9—S1123.3 (2)
C9—N2—C8122.8 (2)N2—C9—S2112.69 (19)
N1—N2—C8121.0 (2)S1—C9—S2124.01 (17)
C5—C6—C1117.8 (3)C3—C2—C1120.8 (3)
C5—C6—C7118.7 (2)C3—C2—H2119.6
C1—C6—C7123.5 (2)C1—C2—H2119.6
N1—C7—C6121.1 (2)C4—C3—C2120.2 (3)
N1—C7—H7126 (2)C4—C3—H3119.9
C6—C7—H7113 (2)C2—C3—H3119.9
O1—C1—C2118.1 (3)S2—C10—H10A109.5
O1—C1—C6122.3 (2)S2—C10—H10B109.5
C2—C1—C6119.7 (3)H10A—C10—H10B109.5
N2—C8—H8A109.5S2—C10—H10C109.5
N2—C8—H8B109.5H10A—C10—H10C109.5
H8A—C8—H8B109.5H10B—C10—H10C109.5
N2—C8—H8C109.5C5—C4—C3119.4 (3)
H8A—C8—H8C109.5C5—C4—H4120.3
H8B—C8—H8C109.5C3—C4—H4120.3
D—H···AD—HH···AD···AD—H···A
O1—H1O···S20.91 (5)2.67 (5)3.453 (2)145 (4)
O1—H1O···N10.91 (5)1.88 (5)2.678 (3)145 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯S20.91 (5)2.67 (5)3.453 (2)145 (4)
O1—H1O⋯N10.91 (5)1.88 (5)2.678 (3)145 (4)
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