Literature DB >> 22606094

(1S,2R,3R,6R,7S,8R,10S,11S)-13-{[4-(4-Chloro-phen-yl)piperazin-1-yl]meth-yl}-10-hy-droxy-4,9-dimethyl-3,8,15-trioxatetra-cyclo-[10.3.0.0(2,4).0(7,9)]penta-decan-14-one.

Mohamed Moumou, Ahmed Benharref, Lahcen El Ammari, Mina Adil, Moha Berraho.   

Abstract

The title compound, C(25)H(33)ClN(2)O(5), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methyl-ene-3,14-dioxatricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of n class="Species">Anvillea radiata. The mol-ecule is built up from fused five- and ten-membered rings with two additional ep-oxy ring systems and a chloro-phenyl-piperazine group as a substituent. The ten-membered ring adopts an approximate chair-chair conformation, while the piperazine ring displays a chair conformation and the five-membered ring shows an envelope conformation with the C atom closest to the hy-droxy group forming the flap. The mol-ecular conformation is stabilized by an intra-molecular O-H⋯N hydrogen bond between the hy-droxy group and a piperazine N atom. The crystal structure is stabilized by weak C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22606094      PMCID: PMC3344091          DOI: 10.1107/S1600536812011816

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea adiata, see: El Hassany et al. (2004 ▶); Qureshi et al. (1990 ▶). For the reactivity of this n class="Chemical">sesquiterpene, see: Hwang et al. (2006 ▶); Neukirch et al. (2003 ▶); Neelakantan et al. (2009 ▶); Castaneda-Acosta et al. (1997 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For the synthetic procedure, see: Moumou et al. (2010 ▶).

Experimental

Crystal data

C25H33ClN2O5 M = 476.98 Orthorhombic, a = 8.0138 (3) Å b = 10.7218 (5) Å c = 28.0174 (13) Å V = 2407.32 (18) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.33 × 0.17 × 0.04 mm

Data collection

Agilent Xcalibur Sapphire1 long nozzle diffractometer 13518 measured reflections 4328 independent reflections 3315 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.102 S = 1.03 4328 reflections 301 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1836 Friedel pairs Flack parameter: 0.03 (13) Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick,2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick,2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011816/bt5834sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011816/bt5834Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812011816/bt5834Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H33ClN2O5F(000) = 1016
Mr = 476.98Dx = 1.316 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 13518 reflections
a = 8.0138 (3) Åθ = 2.4–25.2°
b = 10.7218 (5) ŵ = 0.20 mm1
c = 28.0174 (13) ÅT = 296 K
V = 2407.32 (18) Å3Patelet, colourless
Z = 40.33 × 0.17 × 0.04 mm
Agilent Xcalibur Sapphire1 long nozzle diffractometer3315 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
Graphite monochromatorθmax = 25.2°, θmin = 2.4°
Detector resolution: 8.2632 pixels mm-1h = −9→7
ω scansk = −12→12
13518 measured reflectionsl = −31→33
4328 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0489P)2 + 0.3159P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
4328 reflectionsΔρmax = 0.22 e Å3
301 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack (1983), 1836 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (13)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5658 (3)0.08524 (19)1.03681 (8)0.0420 (6)
H10.51000.15521.05270.050*
C20.5983 (3)−0.0172 (2)1.07076 (8)0.0417 (5)
H20.6496−0.09071.05610.050*
C30.4995 (3)−0.0452 (2)1.11324 (8)0.0486 (6)
C40.4939 (3)−0.1805 (2)1.12703 (9)0.0570 (7)
H4A0.4843−0.18671.16150.068*
H4B0.5981−0.21971.11780.068*
C50.3493 (3)−0.2521 (2)1.10412 (9)0.0578 (7)
H5A0.3715−0.34081.10650.069*
H5B0.2480−0.23491.12190.069*
C60.3212 (3)−0.2194 (2)1.05269 (8)0.0451 (5)
H60.4234−0.20691.03410.054*
C70.1731 (3)−0.1534 (2)1.03400 (8)0.0435 (5)
C80.1828 (3)−0.0735 (2)0.98945 (8)0.0436 (5)
H80.0683−0.05230.98030.052*
C90.2755 (2)0.04992 (19)0.99890 (8)0.0394 (5)
H9A0.25050.07721.03110.047*
H9B0.23290.11280.97720.047*
C100.4669 (2)0.04236 (19)0.99307 (7)0.0387 (5)
H100.4957−0.04500.98700.046*
C110.5445 (3)0.1206 (2)0.95335 (9)0.0466 (6)
H110.48880.20190.95240.056*
C120.7203 (3)0.1384 (2)0.97059 (10)0.0530 (6)
C130.5433 (3)0.0646 (3)0.90349 (9)0.0570 (6)
H13A0.60720.11810.88240.068*
H13B0.5983−0.01600.90440.068*
C140.3600 (3)0.0359 (3)1.13124 (9)0.0605 (7)
H14A0.36330.03881.16550.091*
H14B0.25500.00201.12110.091*
H14C0.37270.11871.11870.091*
C150.0266 (3)−0.1177 (3)1.06488 (10)0.0604 (7)
H15A−0.0753−0.14071.04920.091*
H15B0.0276−0.02921.07020.091*
H15C0.0341−0.16031.09490.091*
C160.2978 (4)0.1685 (2)0.87270 (10)0.0625 (7)
H16A0.36490.21230.84930.075*
H16B0.29320.21920.90130.075*
C170.1245 (4)0.1503 (3)0.85354 (10)0.0708 (8)
H17A0.05560.11190.87790.085*
H17B0.07650.23090.84590.085*
C180.2143 (4)−0.0440 (3)0.81888 (10)0.0701 (8)
H18A0.2250−0.08780.78870.084*
H18B0.1511−0.09660.84050.084*
C190.3848 (4)−0.0219 (3)0.83936 (9)0.0638 (7)
H19A0.4387−0.10140.84530.077*
H19B0.45200.02370.81650.077*
C20−0.0295 (4)0.0626 (3)0.78687 (10)0.0725 (8)
C21−0.1371 (5)0.1627 (4)0.78375 (14)0.1020 (12)
H21−0.11060.23670.79930.122*
C22−0.2840 (5)0.1548 (5)0.75781 (18)0.1239 (17)
H22−0.35520.22320.75640.149*
C23−0.3247 (5)0.0485 (8)0.73460 (13)0.1231 (19)
C24−0.2246 (7)−0.0525 (8)0.73785 (16)0.157 (2)
H24−0.2548−0.12640.72280.188*
C25−0.0770 (5)−0.0464 (5)0.76352 (14)0.1235 (16)
H25−0.0085−0.11630.76520.148*
N10.3753 (2)0.04868 (18)0.88377 (6)0.0494 (5)
N20.1238 (3)0.0725 (2)0.81120 (7)0.0628 (6)
O10.1903 (2)−0.28639 (14)1.02786 (6)0.0532 (4)
O20.2538 (2)−0.14084 (14)0.95132 (6)0.0524 (4)
H2A0.2752−0.09300.92930.079*
O30.72935 (19)0.12359 (15)1.01782 (6)0.0526 (4)
O40.8427 (2)0.16250 (18)0.94779 (8)0.0750 (6)
O50.6623 (2)0.01156 (16)1.11736 (6)0.0582 (5)
Cl−0.51185 (15)0.0396 (2)0.70351 (4)0.1995 (9)
U11U22U33U12U13U23
C10.0249 (11)0.0402 (12)0.0608 (15)−0.0039 (9)0.0027 (10)−0.0073 (10)
C20.0270 (11)0.0431 (12)0.0550 (13)−0.0006 (10)−0.0066 (10)−0.0054 (10)
C30.0383 (13)0.0548 (14)0.0526 (13)−0.0048 (12)−0.0054 (11)−0.0063 (12)
C40.0538 (16)0.0640 (17)0.0531 (15)−0.0004 (13)−0.0068 (12)0.0055 (12)
C50.0558 (17)0.0509 (15)0.0668 (17)−0.0033 (12)−0.0025 (13)0.0080 (12)
C60.0370 (13)0.0395 (11)0.0587 (15)−0.0069 (11)0.0010 (11)−0.0022 (11)
C70.0276 (12)0.0436 (12)0.0592 (14)−0.0060 (10)−0.0002 (10)−0.0094 (11)
C80.0262 (11)0.0475 (12)0.0571 (14)0.0011 (10)−0.0054 (10)−0.0073 (11)
C90.0287 (11)0.0375 (10)0.0519 (12)0.0045 (10)−0.0023 (9)−0.0048 (10)
C100.0321 (11)0.0312 (10)0.0529 (13)0.0003 (9)0.0017 (10)−0.0025 (10)
C110.0407 (13)0.0394 (11)0.0596 (14)0.0009 (11)0.0045 (11)0.0011 (11)
C120.0449 (15)0.0371 (12)0.0769 (19)−0.0073 (11)0.0137 (14)−0.0016 (12)
C130.0545 (16)0.0561 (15)0.0603 (15)0.0075 (13)0.0122 (12)0.0010 (13)
C140.0567 (16)0.0644 (16)0.0605 (15)−0.0039 (15)0.0105 (13)−0.0146 (13)
C150.0323 (13)0.0733 (17)0.0756 (18)−0.0046 (13)0.0082 (13)−0.0063 (14)
C160.074 (2)0.0525 (15)0.0609 (16)0.0130 (14)−0.0042 (14)−0.0013 (12)
C170.0699 (19)0.0800 (19)0.0627 (17)0.0234 (17)−0.0014 (15)−0.0092 (15)
C180.091 (2)0.0634 (16)0.0558 (16)0.0037 (17)0.0012 (15)−0.0100 (14)
C190.078 (2)0.0597 (16)0.0538 (15)0.0120 (15)0.0097 (14)−0.0076 (13)
C200.070 (2)0.107 (2)0.0399 (14)−0.011 (2)0.0070 (14)0.0107 (16)
C210.078 (3)0.103 (3)0.125 (3)−0.015 (2)−0.027 (2)0.042 (2)
C220.078 (3)0.161 (4)0.132 (4)−0.029 (3)−0.026 (3)0.074 (3)
C230.072 (3)0.246 (6)0.051 (2)−0.036 (4)−0.0035 (18)0.020 (3)
C240.107 (4)0.273 (8)0.090 (3)−0.009 (5)−0.012 (3)−0.086 (4)
C250.095 (3)0.184 (4)0.091 (3)0.010 (3)−0.011 (2)−0.073 (3)
N10.0549 (13)0.0464 (10)0.0470 (11)0.0071 (10)0.0056 (10)−0.0016 (9)
N20.0683 (16)0.0730 (15)0.0470 (12)0.0009 (12)0.0021 (11)0.0035 (11)
O10.0456 (10)0.0396 (8)0.0743 (11)−0.0113 (7)−0.0040 (8)−0.0042 (8)
O20.0547 (10)0.0493 (9)0.0533 (10)−0.0031 (8)0.0010 (8)−0.0097 (8)
O30.0334 (9)0.0503 (9)0.0741 (12)−0.0118 (7)0.0018 (8)−0.0018 (8)
O40.0548 (12)0.0705 (12)0.0998 (15)−0.0224 (10)0.0286 (11)−0.0036 (11)
O50.0424 (10)0.0716 (11)0.0606 (10)−0.0096 (9)−0.0145 (8)−0.0055 (9)
Cl0.0911 (8)0.430 (3)0.0770 (6)−0.0500 (13)−0.0245 (6)0.0210 (12)
C1—O31.473 (3)C13—H13A0.9700
C1—C21.476 (3)C13—H13B0.9700
C1—C101.531 (3)C14—H14A0.9600
C1—H10.9800C14—H14B0.9600
C2—O51.436 (3)C14—H14C0.9600
C2—C31.461 (3)C15—H15A0.9600
C2—H20.9800C15—H15B0.9600
C3—O51.444 (3)C15—H15C0.9600
C3—C41.502 (4)C16—N11.461 (3)
C3—C141.503 (3)C16—C171.502 (4)
C4—C51.530 (3)C16—H16A0.9700
C4—H4A0.9700C16—H16B0.9700
C4—H4B0.9700C17—N21.450 (3)
C5—C61.500 (3)C17—H17A0.9700
C5—H5A0.9700C17—H17B0.9700
C5—H5B0.9700C18—N21.460 (4)
C6—O11.449 (3)C18—C191.500 (4)
C6—C71.478 (3)C18—H18A0.9700
C6—H60.9800C18—H18B0.9700
C7—O11.443 (3)C19—N11.458 (3)
C7—C151.508 (3)C19—H19A0.9700
C7—C81.516 (3)C19—H19B0.9700
C8—O21.409 (3)C20—C211.379 (5)
C8—C91.540 (3)C20—C251.393 (5)
C8—H80.9800C20—N21.409 (4)
C9—C101.545 (3)C21—C221.386 (5)
C9—H9A0.9700C21—H210.9300
C9—H9B0.9700C22—C231.353 (7)
C10—C111.526 (3)C22—H220.9300
C10—H100.9800C23—C241.350 (8)
C11—C121.501 (4)C23—Cl1.737 (4)
C11—C131.520 (3)C24—C251.386 (6)
C11—H110.9800C24—H240.9300
C12—O41.199 (3)C25—H250.9300
C12—O31.335 (3)O2—H2A0.8200
C13—N11.465 (3)
O3—C1—C2106.49 (17)N1—C13—H13A108.9
O3—C1—C10104.81 (17)C11—C13—H13A108.9
C2—C1—C10112.58 (17)N1—C13—H13B108.9
O3—C1—H1110.9C11—C13—H13B108.9
C2—C1—H1110.9H13A—C13—H13B107.7
C10—C1—H1110.9C3—C14—H14A109.5
O5—C2—C359.81 (14)C3—C14—H14B109.5
O5—C2—C1119.30 (18)H14A—C14—H14B109.5
C3—C2—C1125.7 (2)C3—C14—H14C109.5
O5—C2—H2113.8H14A—C14—H14C109.5
C3—C2—H2113.8H14B—C14—H14C109.5
C1—C2—H2113.8C7—C15—H15A109.5
O5—C3—C259.26 (14)C7—C15—H15B109.5
O5—C3—C4114.4 (2)H15A—C15—H15B109.5
C2—C3—C4115.1 (2)C7—C15—H15C109.5
O5—C3—C14113.6 (2)H15A—C15—H15C109.5
C2—C3—C14123.9 (2)H15B—C15—H15C109.5
C4—C3—C14116.8 (2)N1—C16—C17110.8 (2)
C3—C4—C5113.5 (2)N1—C16—H16A109.5
C3—C4—H4A108.9C17—C16—H16A109.5
C5—C4—H4A108.9N1—C16—H16B109.5
C3—C4—H4B108.9C17—C16—H16B109.5
C5—C4—H4B108.9H16A—C16—H16B108.1
H4A—C4—H4B107.7N2—C17—C16111.8 (2)
C6—C5—C4113.5 (2)N2—C17—H17A109.3
C6—C5—H5A108.9C16—C17—H17A109.3
C4—C5—H5A108.9N2—C17—H17B109.3
C6—C5—H5B108.9C16—C17—H17B109.3
C4—C5—H5B108.9H17A—C17—H17B107.9
H5A—C5—H5B107.7N2—C18—C19111.9 (2)
O1—C6—C759.07 (14)N2—C18—H18A109.2
O1—C6—C5117.00 (19)C19—C18—H18A109.2
C7—C6—C5124.9 (2)N2—C18—H18B109.2
O1—C6—H6114.7C19—C18—H18B109.2
C7—C6—H6114.7H18A—C18—H18B107.9
C5—C6—H6114.7N1—C19—C18111.2 (2)
O1—C7—C659.48 (13)N1—C19—H19A109.4
O1—C7—C15113.19 (19)C18—C19—H19A109.4
C6—C7—C15122.9 (2)N1—C19—H19B109.4
O1—C7—C8117.09 (19)C18—C19—H19B109.4
C6—C7—C8121.41 (19)H19A—C19—H19B108.0
C15—C7—C8111.7 (2)C21—C20—C25116.9 (3)
O2—C8—C7110.80 (18)C21—C20—N2121.2 (3)
O2—C8—C9112.11 (18)C25—C20—N2121.9 (3)
C7—C8—C9111.63 (18)C20—C21—C22121.1 (4)
O2—C8—H8107.3C20—C21—H21119.4
C7—C8—H8107.3C22—C21—H21119.4
C9—C8—H8107.3C23—C22—C21120.6 (5)
C8—C9—C10114.54 (17)C23—C22—H22119.7
C8—C9—H9A108.6C21—C22—H22119.7
C10—C9—H9A108.6C24—C23—C22120.0 (4)
C8—C9—H9B108.6C24—C23—Cl120.2 (5)
C10—C9—H9B108.6C22—C23—Cl119.7 (6)
H9A—C9—H9B107.6C23—C24—C25120.3 (5)
C11—C10—C1101.98 (17)C23—C24—H24119.8
C11—C10—C9116.96 (19)C25—C24—H24119.8
C1—C10—C9114.46 (18)C24—C25—C20121.1 (5)
C11—C10—H10107.6C24—C25—H25119.5
C1—C10—H10107.6C20—C25—H25119.5
C9—C10—H10107.6C19—N1—C16107.29 (19)
C12—C11—C13110.6 (2)C19—N1—C13109.5 (2)
C12—C11—C10102.57 (19)C16—N1—C13111.6 (2)
C13—C11—C10116.78 (19)C20—N2—C17116.2 (2)
C12—C11—H11108.9C20—N2—C18116.1 (2)
C13—C11—H11108.9C17—N2—C18111.7 (2)
C10—C11—H11108.9C7—O1—C661.45 (14)
O4—C12—O3120.6 (2)C8—O2—H2A109.5
O4—C12—C11128.6 (3)C12—O3—C1110.04 (18)
O3—C12—C11110.8 (2)C2—O5—C360.93 (14)
N1—C13—C11113.45 (19)
D—H···AD—HH···AD···AD—H···A
O2—H2A···N10.822.142.943 (2)166
C1—H1···O4i0.982.373.271 (3)152
C10—H10···O1ii0.982.413.329 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯N10.822.142.943 (2)166
C1—H1⋯O4i0.982.373.271 (3)152
C10—H10⋯O1ii0.982.413.329 (3)153

Symmetry codes: (i) ; (ii) .

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Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

5.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

6.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

7.  9β-Hy-droxy-1β,10α-ep-oxy-parthenolide.

Authors:  Mohamed Moumou; Mohamed Akssira; Lahcen El Ammari; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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