Literature DB >> 22606090

1-(2,4-Dichloro-phen-yl)-5-(2-nitro-anilino)-1H-pyrazole-4-carbonitrile.

Ju Liu, Zhi-Qiang Cai, Yang Wang, Chun-Yan Li, Li-Feng Xu.   

Abstract

In the title compound, C(16)H(9)Cl(2)N(5)O(2), the folded mol-ecular conformation is characterized by a dihedral angle between the two benzene rings of 74.03 (5)°. An intra-molecular N-H⋯O hydrogen bond is observed between the H atom of the amide group and a nitro-group O atom. Inter-molecular C-H⋯O and N-H⋯N hydrogen bonds feature in the crystal packing.

Entities:  

Year:  2012        PMID: 22606090      PMCID: PMC3344087          DOI: 10.1107/S1600536812011506

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to N-1-diaryl-1H-pyrazol-5-amine derivatives as synthetic inter­mediates in the preparation of medicinal compounds and the synthesis of the title compound, see: Markwalder et al. (2004 ▶); Mehdi et al. (2010 ▶). For the pharmacological activity of the 5-amino­pyrazole nucleus, see: Nils et al. (2010 ▶); Aymn et al. (2005 ▶).

Experimental

Crystal data

C16H9Cl2N5O2 M = 374.18 Orthorhombic, a = 13.878 (3) Å b = 13.475 (3) Å c = 17.421 (4) Å V = 3257.7 (11) Å3 Z = 8 Mo Kα radiation μ = 0.42 mm−1 T = 293 K 0.20 × 0.18 × 0.12 mm

Data collection

Rigaku Saturn724 CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) ▶ T min = 0.921, T max = 0.951 31011 measured reflections 3888 independent reflections 2738 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.142 S = 1.04 3888 reflections 231 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2005) ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011506/kp2396sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011506/kp2396Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812011506/kp2396Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H9Cl2N5O2F(000) = 1520
Mr = 374.18Dx = 1.526 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P2n2abCell parameters from 7017 reflections
a = 13.878 (3) Åθ = 2.4–28.0°
b = 13.475 (3) ŵ = 0.42 mm1
c = 17.421 (4) ÅT = 293 K
V = 3257.7 (11) Å3Prism, yellow
Z = 80.20 × 0.18 × 0.12 mm
Rigaku Saturn724 CCD diffractometer3888 independent reflections
Radiation source: rotating anode2738 reflections with I > 2σ(I)
Multilayer monochromatorRint = 0.050
Detector resolution: 7.31 pixels mm-1θmax = 27.9°, θmin = 2.3°
ω scansh = −17→17
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −17→16
Tmin = 0.921, Tmax = 0.951l = −22→22
31011 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.142w = 1/[σ2(Fo2) + (0.0759P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3888 reflectionsΔρmax = 0.24 e Å3
231 parametersΔρmin = −0.24 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0166 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.15552 (5)0.60779 (4)0.46994 (4)0.0673 (2)
Cl2−0.14562 (5)0.48959 (6)0.30041 (5)0.0881 (3)
O10.35014 (15)0.63038 (12)0.30863 (12)0.0858 (6)
O20.41521 (15)0.62525 (14)0.19700 (10)0.0914 (6)
N10.20172 (14)0.33598 (13)0.53423 (10)0.0540 (5)
N20.20985 (13)0.39203 (11)0.46920 (9)0.0467 (4)
N30.54146 (17)0.37889 (14)0.51865 (12)0.0667 (5)
N40.32727 (13)0.46781 (13)0.38776 (9)0.0477 (4)
N50.37959 (14)0.58365 (14)0.25298 (11)0.0609 (5)
C10.09266 (15)0.51444 (13)0.42412 (12)0.0481 (5)
C20.00946 (15)0.53705 (15)0.38503 (13)0.0558 (6)
H2A−0.01280.60210.38300.067*
C3−0.04013 (16)0.46247 (16)0.34907 (13)0.0556 (6)
C4−0.00852 (16)0.36558 (16)0.35107 (13)0.0575 (6)
H4A−0.04280.31580.32610.069*
C50.07443 (15)0.34366 (14)0.39045 (12)0.0521 (5)
H50.09620.27850.39250.063*
C60.12581 (15)0.41746 (14)0.42708 (11)0.0446 (5)
C70.30239 (15)0.41365 (13)0.45245 (11)0.0438 (5)
C80.35782 (15)0.37153 (15)0.50928 (12)0.0476 (5)
C90.29092 (16)0.32434 (15)0.55794 (11)0.0536 (5)
H90.30790.28900.60180.064*
C100.45966 (19)0.37500 (15)0.51458 (12)0.0516 (5)
C110.34423 (13)0.42402 (14)0.31790 (11)0.0407 (4)
C120.33508 (16)0.32211 (15)0.30894 (12)0.0559 (6)
H120.31640.28380.35080.067*
C130.35285 (19)0.27656 (18)0.24013 (15)0.0735 (7)
H130.34550.20820.23600.088*
C140.3815 (2)0.3305 (2)0.17670 (14)0.0750 (7)
H140.39420.29880.13040.090*
C150.39084 (16)0.4299 (2)0.18286 (12)0.0608 (6)
H150.40980.46700.14040.073*
C160.37242 (14)0.47708 (15)0.25204 (11)0.0453 (5)
H40.3360 (18)0.528 (2)0.3926 (15)0.077 (8)*
U11U22U33U12U13U23
Cl10.0852 (5)0.0448 (3)0.0719 (4)−0.0062 (3)−0.0050 (3)−0.0152 (3)
Cl20.0593 (4)0.1038 (6)0.1013 (6)0.0108 (3)−0.0192 (4)−0.0065 (4)
O10.1372 (18)0.0455 (10)0.0746 (13)−0.0036 (9)0.0066 (11)0.0082 (9)
O20.1296 (16)0.0868 (13)0.0577 (11)−0.0414 (11)−0.0163 (11)0.0338 (9)
N10.0691 (13)0.0515 (10)0.0413 (9)−0.0029 (8)0.0045 (8)0.0103 (7)
N20.0577 (11)0.0429 (9)0.0394 (9)−0.0014 (7)0.0013 (7)0.0059 (6)
N30.0697 (15)0.0613 (12)0.0691 (14)0.0055 (10)−0.0084 (10)0.0057 (9)
N40.0668 (11)0.0363 (9)0.0401 (9)−0.0063 (8)0.0028 (8)0.0020 (7)
N50.0745 (13)0.0594 (12)0.0488 (12)−0.0166 (10)−0.0150 (10)0.0172 (9)
C10.0547 (13)0.0399 (10)0.0499 (12)−0.0017 (9)0.0047 (10)−0.0043 (8)
C20.0593 (14)0.0464 (12)0.0617 (14)0.0075 (10)0.0046 (11)−0.0014 (10)
C30.0485 (13)0.0607 (14)0.0576 (14)0.0001 (10)0.0000 (10)0.0011 (10)
C40.0570 (14)0.0552 (13)0.0603 (14)−0.0137 (11)0.0003 (11)−0.0063 (10)
C50.0603 (13)0.0374 (10)0.0586 (13)−0.0049 (9)0.0041 (11)−0.0001 (9)
C60.0504 (12)0.0412 (10)0.0421 (11)−0.0031 (8)0.0036 (9)0.0022 (8)
C70.0556 (13)0.0383 (10)0.0375 (10)0.0000 (8)0.0012 (9)0.0007 (7)
C80.0616 (14)0.0411 (10)0.0400 (11)0.0023 (9)−0.0034 (9)−0.0011 (8)
C90.0733 (16)0.0472 (12)0.0401 (11)0.0021 (10)−0.0014 (10)0.0068 (8)
C100.0625 (16)0.0450 (11)0.0472 (12)0.0066 (10)−0.0054 (10)0.0006 (8)
C110.0394 (10)0.0420 (10)0.0406 (10)−0.0025 (8)−0.0020 (8)0.0023 (8)
C120.0729 (14)0.0439 (11)0.0511 (13)−0.0054 (10)0.0077 (11)−0.0017 (9)
C130.097 (2)0.0552 (15)0.0684 (17)−0.0038 (12)0.0093 (14)−0.0156 (12)
C140.0862 (18)0.0849 (19)0.0540 (15)−0.0084 (15)0.0118 (13)−0.0203 (13)
C150.0567 (14)0.0836 (17)0.0422 (12)−0.0094 (12)0.0042 (10)0.0003 (11)
C160.0428 (11)0.0514 (11)0.0419 (11)−0.0071 (9)−0.0053 (8)0.0061 (8)
Cl1—C11.726 (2)C4—C51.372 (3)
Cl2—C31.731 (2)C4—H4A0.9300
O1—N51.226 (3)C5—C61.380 (3)
O2—N51.229 (2)C5—H50.9300
N1—C91.314 (3)C7—C81.376 (3)
N1—N21.366 (2)C8—C91.409 (3)
N2—C71.349 (3)C8—C101.417 (3)
N2—C61.420 (3)C9—H90.9300
N3—C101.139 (3)C11—C121.388 (3)
N4—C111.373 (2)C11—C161.407 (3)
N4—C71.386 (2)C12—C131.369 (3)
N4—H40.82 (3)C12—H120.9300
N5—C161.440 (3)C13—C141.381 (3)
C1—C21.375 (3)C13—H130.9300
C1—C61.386 (3)C14—C151.350 (3)
C2—C31.370 (3)C14—H140.9300
C2—H2A0.9300C15—C161.386 (3)
C3—C41.378 (3)C15—H150.9300
C9—N1—N2104.40 (16)N2—C7—C8106.71 (18)
C7—N2—N1112.17 (16)N2—C7—N4121.77 (18)
C7—N2—C6128.19 (16)C8—C7—N4131.51 (19)
N1—N2—C6119.60 (17)C7—C8—C9104.52 (19)
C11—N4—C7122.49 (17)C7—C8—C10126.21 (19)
C11—N4—H4119.2 (18)C9—C8—C10129.26 (19)
C7—N4—H4118.1 (18)N1—C9—C8112.19 (18)
O1—N5—O2121.8 (2)N1—C9—H9123.9
O1—N5—C16119.88 (18)C8—C9—H9123.9
O2—N5—C16118.3 (2)N3—C10—C8179.2 (2)
C2—C1—C6120.40 (18)N4—C11—C12120.61 (17)
C2—C1—Cl1119.47 (15)N4—C11—C16123.50 (17)
C6—C1—Cl1120.13 (17)C12—C11—C16115.88 (18)
C3—C2—C1119.08 (19)C13—C12—C11121.7 (2)
C3—C2—H2A120.5C13—C12—H12119.1
C1—C2—H2A120.5C11—C12—H12119.1
C2—C3—C4121.6 (2)C12—C13—C14121.1 (2)
C2—C3—Cl2119.61 (17)C12—C13—H13119.5
C4—C3—Cl2118.80 (17)C14—C13—H13119.5
C5—C4—C3118.9 (2)C15—C14—C13119.1 (2)
C5—C4—H4A120.5C15—C14—H14120.4
C3—C4—H4A120.5C13—C14—H14120.4
C4—C5—C6120.63 (19)C14—C15—C16120.4 (2)
C4—C5—H5119.7C14—C15—H15119.8
C6—C5—H5119.7C16—C15—H15119.8
C5—C6—C1119.4 (2)C15—C16—C11121.82 (19)
C5—C6—N2119.31 (17)C15—C16—N5117.01 (19)
C1—C6—N2121.28 (17)C11—C16—N5121.12 (18)
C9—N1—N2—C70.7 (2)N4—C7—C8—C9−178.5 (2)
C9—N1—N2—C6178.77 (16)N2—C7—C8—C10179.56 (19)
C6—C1—C2—C30.0 (3)N4—C7—C8—C100.3 (4)
Cl1—C1—C2—C3−179.77 (17)N2—N1—C9—C8−0.3 (2)
C1—C2—C3—C4−0.1 (3)C7—C8—C9—N1−0.3 (2)
C1—C2—C3—Cl2179.38 (17)C10—C8—C9—N1−179.1 (2)
C2—C3—C4—C50.3 (3)C7—C8—C10—N345 (19)
Cl2—C3—C4—C5−179.17 (17)C9—C8—C10—N3−136 (19)
C3—C4—C5—C6−0.4 (3)C7—N4—C11—C121.3 (3)
C4—C5—C6—C10.3 (3)C7—N4—C11—C16−177.99 (18)
C4—C5—C6—N2178.21 (19)N4—C11—C12—C13−179.1 (2)
C2—C1—C6—C5−0.1 (3)C16—C11—C12—C130.2 (3)
Cl1—C1—C6—C5179.68 (16)C11—C12—C13—C140.5 (4)
C2—C1—C6—N2−177.94 (18)C12—C13—C14—C15−0.8 (4)
Cl1—C1—C6—N21.8 (3)C13—C14—C15—C160.3 (4)
C7—N2—C6—C5110.9 (2)C14—C15—C16—C110.4 (3)
N1—N2—C6—C5−66.7 (2)C14—C15—C16—N5−177.1 (2)
C7—N2—C6—C1−71.2 (3)N4—C11—C16—C15178.6 (2)
N1—N2—C6—C1111.1 (2)C12—C11—C16—C15−0.7 (3)
N1—N2—C7—C8−0.9 (2)N4—C11—C16—N5−3.9 (3)
C6—N2—C7—C8−178.74 (17)C12—C11—C16—N5176.78 (18)
N1—N2—C7—N4178.39 (17)O1—N5—C16—C15168.9 (2)
C6—N2—C7—N40.6 (3)O2—N5—C16—C15−10.8 (3)
C11—N4—C7—N2−88.3 (2)O1—N5—C16—C11−8.7 (3)
C11—N4—C7—C890.8 (3)O2—N5—C16—C11171.6 (2)
N2—C7—C8—C90.7 (2)
D—H···AD—HH···AD···AD—H···A
C9—H9···O2i0.932.513.050 (3)117
C5—H5···O1ii0.932.583.374 (3)143
N4—H4···N3iii0.82 (3)2.62 (3)3.201 (3)129 (2)
N4—H4···O10.82 (3)2.02 (3)2.608 (2)128 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯O2i0.932.513.050 (3)117
C5—H5⋯O1ii0.932.583.374 (3)143
N4—H4⋯N3iii0.82 (3)2.62 (3)3.201 (3)129 (2)
N4—H4⋯O10.82 (3)2.02 (3)2.608 (2)128 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

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Authors:  Nils Griebenow; Lars Bärfacker; Heinrich Meier; Dirk Schneider; Nicole Teusch; Klemens Lustig; Raimund Kast; Peter Kolkhof
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and biological evaluation of 1-aryl-4,5-dihydro-1H-pyrazolo[3,4-d]pyrimidin-4-one inhibitors of cyclin-dependent kinases.

Authors:  Jay A Markwalder; Marc R Arnone; Pamela A Benfield; Michael Boisclair; Catherine R Burton; Chong-Hwan Chang; Sarah S Cox; Philip M Czerniak; Charity L Dean; Deborah Doleniak; Robert Grafstrom; Barbara A Harrison; Robert F Kaltenbach; David A Nugiel; Karen A Rossi; Susan R Sherk; Lisa M Sisk; Pieter Stouten; George L Trainor; Peter Worland; Steven P Seitz
Journal:  J Med Chem       Date:  2004-11-18       Impact factor: 7.446

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1.  3-(2,4-Dichloro-phen-yl)-5-(4-fluoro-phen-yl)-2-methyl-7-(trifluoro-meth-yl)pyrazolo-[1,5-a]pyrimidine.

Authors:  Ju Liu; Zhi-Qiang Cai; Yang Wang; Ming-Jun Jiang; Li-Feng Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25
  1 in total

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