Literature DB >> 21837093

1,1'-[1,4-Phenyl-enebis(methyl-ene)]bis-(2-methyl-1H-imidazol-3-ium) 2,4-dicarb-oxy-benzene-1,5-dicarboxyl-ate monohydrate.

Gui-Ying Dong, Tong-Fei Liu, Cui-Hong He, Xiao-Chen Deng, Xiao-Ge Shi.   

Abstract

In the dication of the title compound, C(16)H(20)N(4) (2+)·C(10)H(4)O(8) (2-)·H(2)O, the dihedral angles formed by mean planes of the imidazolium rings and the benzene ring are 69.05 (18) and 89.1 (2)°. In the crystal, the components are linked into a three-dimensional network by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21837093      PMCID: PMC3151773          DOI: 10.1107/S160053681102263X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 1,4-bis­(2-methyl-1H-imidazole-3-ium)n class="Chemical">benzene, see: Hoskins et al. (1997 ▶). For related complexes, see: Liu Wu, Wan et al. (2011 ▶); Liu, Wu, Zhang & Cui (2011 ▶).

Experimental

Crystal data

C16H20N4 2+·C10H4O8 2−·H2O M = 538.51 Monoclinic, a = 9.7139 (19) Å b = 19.428 (4) Å c = 13.856 (3) Å β = 97.39 (3)° V = 2593.3 (9) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 295 K 0.22 × 0.18 × 0.16 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.968, T max = 0.971 20668 measured reflections 4571 independent reflections 3075 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.144 S = 1.10 4571 reflections 356 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681102263X/lh5268sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681102263X/lh5268Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681102263X/lh5268Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H20N42+·C10H4O82·H2OF(000) = 1128
Mr = 538.51Dx = 1.379 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2963 reflections
a = 9.7139 (19) Åθ = 4.6–23.5°
b = 19.428 (4) ŵ = 0.11 mm1
c = 13.856 (3) ÅT = 295 K
β = 97.39 (3)°Block, colourless
V = 2593.3 (9) Å30.22 × 0.18 × 0.16 mm
Z = 4
Bruker SMART CCD area-detector diffractometer4571 independent reflections
Radiation source: fine–focus sealed tube3075 reflections with I > 2σ(I)
graphiteRint = 0.078
φ and ω scansθmax = 25.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.968, Tmax = 0.971k = −23→23
20668 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0452P)2 + 1.9004P] where P = (Fo2 + 2Fc2)/3
4571 reflections(Δ/σ)max = 0.001
356 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.3527 (2)0.26814 (12)0.7753 (2)0.0460 (7)
H11.43610.25980.78060.069*
C11.1278 (3)0.21981 (14)0.7695 (2)0.0211 (7)
O60.6182 (2)0.25426 (12)0.78948 (16)0.0389 (6)
N20.0283 (3)0.27283 (15)1.00182 (19)0.0370 (7)
C61.0713 (3)0.28578 (15)0.7517 (2)0.0241 (7)
H61.13090.32320.75120.029*
C50.9277 (3)0.29696 (14)0.7346 (2)0.0215 (7)
C21.0382 (3)0.16286 (15)0.7718 (2)0.0228 (7)
O31.0942 (3)0.04591 (11)0.73740 (17)0.0466 (7)
C100.8718 (3)0.36897 (15)0.7201 (2)0.0280 (7)
O70.7529 (2)0.38125 (12)0.6872 (2)0.0552 (8)
C40.8365 (3)0.23966 (15)0.7314 (2)0.0211 (7)
C90.6773 (3)0.24479 (15)0.7138 (2)0.0280 (7)
C30.8944 (3)0.17407 (15)0.7510 (2)0.0251 (7)
H30.83510.13640.75010.030*
N30.4318 (3)0.51795 (13)0.63373 (19)0.0311 (7)
O50.6155 (2)0.23446 (14)0.62994 (17)0.0487 (7)
N10.2118 (3)0.33609 (14)1.03805 (19)0.0341 (7)
C71.2841 (3)0.21099 (16)0.7850 (2)0.0269 (7)
O41.1014 (3)0.07904 (12)0.89343 (18)0.0526 (7)
C180.0723 (4)0.33800 (18)1.0185 (2)0.0359 (8)
O21.3390 (2)0.15570 (12)0.8038 (2)0.0622 (9)
C81.0850 (3)0.08958 (16)0.8028 (3)0.0291 (8)
C140.4739 (3)0.47375 (16)0.8037 (2)0.0303 (8)
O80.9640 (3)0.41682 (12)0.7470 (3)0.0736 (10)
H80.92680.45470.74150.110*
C230.3679 (4)0.47019 (17)0.5734 (2)0.0355 (8)
C250.3698 (4)0.58156 (17)0.6113 (3)0.0398 (9)
H250.39420.62320.64190.048*
C170.3073 (4)0.39578 (18)1.0599 (3)0.0445 (9)
H17A0.38400.38211.10790.053*
H17B0.25790.43271.08770.053*
C110.3644 (4)0.42225 (17)0.9695 (2)0.0369 (9)
N40.2683 (3)0.50177 (15)0.5137 (2)0.0436 (8)
C220.5378 (3)0.50329 (17)0.7177 (2)0.0357 (8)
H22A0.58680.54540.73770.043*
H22B0.60470.47080.69810.043*
C190.1416 (4)0.22940 (18)1.0100 (3)0.0411 (9)
H190.13950.18191.00150.049*
C200.2568 (4)0.26881 (18)1.0327 (2)0.0388 (9)
H200.34820.25351.04270.047*
C130.5502 (4)0.4301 (2)0.8693 (3)0.0532 (11)
H130.63920.41740.85860.064*
C240.2675 (4)0.57139 (19)0.5368 (3)0.0476 (10)
H240.20790.60470.50680.057*
C160.2873 (5)0.4638 (2)0.9035 (3)0.0718 (14)
H160.19730.47550.91340.086*
C120.4964 (4)0.4048 (2)0.9512 (3)0.0556 (11)
H120.55040.37580.99400.067*
C150.3412 (4)0.4890 (2)0.8213 (3)0.0677 (14)
H150.28570.51670.77750.081*
O1W0.7588 (2)0.24523 (16)0.97416 (18)0.0651 (9)
C260.4009 (4)0.39518 (18)0.5750 (3)0.0522 (11)
H26A0.35200.37250.62190.078*
H26B0.49900.38890.59230.078*
H26C0.37310.37590.51170.078*
C21−0.0224 (4)0.3989 (2)1.0153 (3)0.0587 (11)
H21A−0.00200.42501.07420.088*
H21B−0.11700.38351.00890.088*
H21C−0.00890.42740.96060.088*
H1C0.21740.47870.45750.088*
H2−0.08200.26580.99240.088*
H1A0.70480.24850.92050.088*
H1B0.68950.25291.00440.088*
U11U22U33U12U13U23
O10.0160 (11)0.0409 (15)0.0811 (19)0.0003 (11)0.0055 (13)0.0144 (13)
C10.0194 (16)0.0217 (16)0.0228 (17)0.0016 (13)0.0051 (13)−0.0015 (13)
O60.0169 (11)0.0709 (17)0.0295 (13)0.0036 (11)0.0052 (10)0.0011 (12)
N20.0357 (17)0.0423 (18)0.0331 (17)0.0002 (14)0.0045 (14)−0.0022 (13)
C60.0203 (16)0.0203 (16)0.0315 (18)−0.0035 (13)0.0025 (14)0.0007 (13)
C50.0186 (16)0.0220 (16)0.0241 (17)0.0036 (13)0.0037 (13)0.0022 (13)
C20.0222 (16)0.0205 (16)0.0258 (17)0.0003 (13)0.0034 (13)−0.0019 (13)
O30.0692 (18)0.0224 (13)0.0476 (16)0.0054 (12)0.0056 (13)−0.0041 (12)
C100.0247 (18)0.0238 (18)0.035 (2)0.0001 (15)0.0030 (15)0.0039 (14)
O70.0304 (15)0.0345 (15)0.097 (2)0.0101 (11)−0.0081 (14)0.0086 (14)
C40.0175 (15)0.0250 (17)0.0206 (16)0.0013 (13)0.0016 (13)0.0034 (13)
C90.0210 (17)0.0278 (18)0.035 (2)0.0005 (14)0.0019 (16)0.0033 (15)
C30.0207 (16)0.0234 (17)0.0312 (18)−0.0071 (13)0.0029 (14)0.0013 (14)
N30.0331 (15)0.0300 (16)0.0306 (16)−0.0048 (13)0.0059 (13)−0.0040 (13)
O50.0243 (13)0.086 (2)0.0335 (15)−0.0021 (13)−0.0040 (11)−0.0098 (13)
N10.0387 (17)0.0352 (17)0.0283 (16)−0.0049 (14)0.0037 (13)0.0000 (13)
C70.0249 (17)0.0249 (18)0.0303 (19)0.0020 (15)0.0015 (15)−0.0041 (14)
O40.0766 (19)0.0400 (15)0.0376 (16)0.0118 (13)−0.0067 (14)0.0096 (12)
C180.041 (2)0.040 (2)0.0267 (19)0.0029 (17)0.0053 (16)−0.0015 (16)
O20.0251 (13)0.0291 (14)0.130 (3)0.0091 (11)−0.0012 (15)0.0043 (15)
C80.0228 (17)0.0228 (18)0.041 (2)−0.0009 (14)0.0020 (16)0.0040 (16)
C140.0293 (18)0.0299 (18)0.0314 (19)−0.0041 (15)0.0023 (15)−0.0035 (15)
O80.0444 (16)0.0205 (14)0.146 (3)0.0020 (12)−0.0264 (18)0.0019 (17)
C230.040 (2)0.032 (2)0.034 (2)−0.0040 (16)0.0042 (17)−0.0010 (16)
C250.049 (2)0.0268 (19)0.043 (2)−0.0006 (17)0.0027 (19)−0.0008 (17)
C170.052 (2)0.043 (2)0.038 (2)−0.0125 (19)0.0045 (18)−0.0023 (17)
C110.040 (2)0.033 (2)0.038 (2)−0.0066 (17)0.0048 (17)−0.0026 (16)
N40.0488 (19)0.0444 (19)0.0342 (18)−0.0055 (15)−0.0076 (15)−0.0051 (14)
C220.0316 (19)0.036 (2)0.038 (2)−0.0015 (15)−0.0029 (16)−0.0011 (16)
C190.048 (2)0.034 (2)0.042 (2)−0.0005 (18)0.0113 (18)−0.0044 (17)
C200.040 (2)0.041 (2)0.037 (2)0.0061 (17)0.0092 (17)0.0013 (17)
C130.043 (2)0.061 (3)0.059 (3)0.016 (2)0.015 (2)0.015 (2)
C240.055 (3)0.040 (2)0.044 (2)0.0078 (19)−0.006 (2)0.0033 (18)
C160.055 (3)0.093 (4)0.073 (3)0.030 (3)0.034 (2)0.032 (3)
C120.050 (3)0.061 (3)0.057 (3)0.014 (2)0.010 (2)0.021 (2)
C150.055 (3)0.084 (3)0.068 (3)0.030 (2)0.022 (2)0.045 (3)
O1W0.0330 (14)0.123 (3)0.0385 (16)−0.0012 (15)0.0002 (12)−0.0064 (16)
C260.059 (3)0.036 (2)0.059 (3)−0.0044 (18)0.000 (2)−0.0091 (19)
C210.059 (3)0.054 (3)0.063 (3)0.014 (2)0.007 (2)−0.004 (2)
O1—C71.311 (4)C14—C221.524 (5)
O1—H10.8200O8—H80.8200
C1—C61.404 (4)C23—N41.338 (4)
C1—C21.411 (4)C23—C261.492 (5)
C1—C71.516 (4)C25—C241.352 (5)
O6—C91.272 (4)C25—H250.9300
N2—C181.347 (4)C17—C111.523 (5)
N2—C191.380 (4)C17—H17A0.9700
N2—H21.0718C17—H17B0.9700
C6—C51.402 (4)C11—C161.369 (5)
C6—H60.9300C11—C121.381 (5)
C5—C41.420 (4)N4—C241.390 (4)
C5—C101.505 (4)N4—H1C0.9761
C2—C31.406 (4)C22—H22A0.9700
C2—C81.539 (4)C22—H22B0.9700
O3—C81.253 (4)C19—C201.359 (5)
C10—O71.210 (4)C19—H190.9300
C10—O81.312 (4)C20—H200.9300
C4—C31.405 (4)C13—C121.398 (5)
C4—C91.538 (4)C13—H130.9300
C9—O51.253 (4)C24—H240.9300
C3—H30.9300C16—C151.402 (5)
N3—C231.346 (4)C16—H160.9300
N3—C251.392 (4)C12—H120.9300
N3—C221.479 (4)C15—H150.9300
N1—C181.349 (4)O1W—H1A0.8558
N1—C201.383 (4)O1W—H1B0.8509
N1—C171.492 (4)C26—H26A0.9600
C7—O21.212 (4)C26—H26B0.9600
O4—C81.262 (4)C26—H26C0.9600
C18—C211.496 (5)C21—H21A0.9600
C14—C151.374 (5)C21—H21B0.9600
C14—C131.386 (5)C21—H21C0.9600
C7—O1—H1109.5N1—C17—C11112.2 (3)
C6—C1—C2119.5 (3)N1—C17—H17A109.2
C6—C1—C7119.4 (3)C11—C17—H17A109.2
C2—C1—C7121.2 (3)N1—C17—H17B109.2
C18—N2—C19109.2 (3)C11—C17—H17B109.2
C18—N2—H2115.5H17A—C17—H17B107.9
C19—N2—H2134.9C16—C11—C12117.6 (3)
C5—C6—C1122.0 (3)C16—C11—C17121.5 (3)
C5—C6—H6119.0C12—C11—C17120.9 (3)
C1—C6—H6119.0C23—N4—C24109.2 (3)
C6—C5—C4119.2 (3)C23—N4—H1C122.3
C6—C5—C10120.1 (3)C24—N4—H1C127.8
C4—C5—C10120.8 (2)N3—C22—C14112.0 (3)
C3—C2—C1118.2 (3)N3—C22—H22A109.2
C3—C2—C8116.8 (2)C14—C22—H22A109.2
C1—C2—C8124.8 (3)N3—C22—H22B109.2
O7—C10—O8123.5 (3)C14—C22—H22B109.2
O7—C10—C5123.0 (3)H22A—C22—H22B107.9
O8—C10—C5113.5 (3)C20—C19—N2107.4 (3)
C3—C4—C5118.2 (3)C20—C19—H19126.3
C3—C4—C9117.3 (3)N2—C19—H19126.3
C5—C4—C9124.4 (2)C19—C20—N1106.8 (3)
O5—C9—O6125.1 (3)C19—C20—H20126.6
O5—C9—C4119.2 (3)N1—C20—H20126.6
O6—C9—C4115.4 (3)C14—C13—C12121.6 (3)
C4—C3—C2122.9 (3)C14—C13—H13119.2
C4—C3—H3118.6C12—C13—H13119.2
C2—C3—H3118.6C25—C24—N4107.0 (3)
C23—N3—C25108.8 (3)C25—C24—H24126.5
C23—N3—C22125.1 (3)N4—C24—H24126.5
C25—N3—C22125.7 (3)C11—C16—C15121.3 (4)
C18—N1—C20109.4 (3)C11—C16—H16119.4
C18—N1—C17127.0 (3)C15—C16—H16119.4
C20—N1—C17123.6 (3)C11—C12—C13121.0 (4)
O2—C7—O1123.9 (3)C11—C12—H12119.5
O2—C7—C1122.4 (3)C13—C12—H12119.5
O1—C7—C1113.8 (3)C14—C15—C16121.7 (4)
N2—C18—N1107.3 (3)C14—C15—H15119.1
N2—C18—C21124.0 (3)C16—C15—H15119.1
N1—C18—C21128.8 (3)H1A—O1W—H1B88.8
O3—C8—O4126.8 (3)C23—C26—H26A109.5
O3—C8—C2118.0 (3)C23—C26—H26B109.5
O4—C8—C2115.0 (3)H26A—C26—H26B109.5
C15—C14—C13116.7 (3)C23—C26—H26C109.5
C15—C14—C22122.9 (3)H26A—C26—H26C109.5
C13—C14—C22120.4 (3)H26B—C26—H26C109.5
C10—O8—H8109.5C18—C21—H21A109.5
N4—C23—N3107.9 (3)C18—C21—H21B109.5
N4—C23—C26126.4 (3)H21A—C21—H21B109.5
N3—C23—C26125.7 (3)C18—C21—H21C109.5
C24—C25—N3107.1 (3)H21A—C21—H21C109.5
C24—C25—H25126.4H21B—C21—H21C109.5
N3—C25—H25126.4
D—H···AD—HH···AD···AD—H···A
O1—H1···O6i0.821.762.575 (3)172
O1W—H1A···O60.861.902.747 (3)168
O1W—H1B···O5ii0.851.982.743 (3)149
N4—H1C···O4iii0.981.752.679 (4)158
N2—H2···O1Wiv1.071.592.651 (4)172
O8—H8···O3v0.821.812.586 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O6i0.821.762.575 (3)172
O1W—H1A⋯O60.861.902.747 (3)168
O1W—H1B⋯O5ii0.851.982.743 (3)149
N4—H1C⋯O4iii0.981.752.679 (4)158
N2—H2⋯O1Wiv1.071.592.651 (4)172
O8—H8⋯O3v0.821.812.586 (3)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Bis(2-amino-pyridinium) 2,5-dicarb-oxy-benzene-1,4-dicarboxyl-ate.

Authors:  V H Rodrigues; Mohammad Hakimi; Elham Motieiyan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25
  1 in total

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